Rh1BG056000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
8275258 .. 8278428
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG056000.1

Sequence Viewer

Length: 306 bp
ATGGCTGCCTCACCGCCTCACTCCGATGCTCAGCTGACTCTCCTCCCTCCTCCTCCTCCTCCTCCGCCGGAATCTGAATCTCAGATCTCATCCCTCCTTTACGAGATTTCGCAACAAGTTCAAGCAGAAATGGAGGACATGCTCAAGTCGATCAGGGAAATTGATGAAAACTCTGCTCAGATAAATGAAGAGATTGACAAGTGTAAGGACTCTGCGCTCGAGAAGAAGAGAGGCTTAGACGAAACCAAAGAACAAGTCGAGAAAGCTGCTTATGCCGTTTTGCAGATGCTCAACAACAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.25

Weight (kDa)

4.48

Isoelectric Point (pI)

66.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 65
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 2 cut(s) 34, 266
AluI AGCT 2 cut(s) 34, 266
Ama87I CYCGRG 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 5, 266
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 3
AvaI CYCGRG 1 cut(s) 218
BbvI GCAGC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BglII AGATCT 1 cut(s) 84
BisI GCNGC 2 cut(s) 6, 267
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 7, 268
BmeT110I CYCGRG 1 cut(s) 218
BmsI GCATC 2 cut(s) 16, 276
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 128
BseGI GGATG 1 cut(s) 89
BseMII CTCAG 3 cut(s) 44, 95, 191
BseRI GAGGAG 6 cut(s) 32, 39, 42, 45, 48, 51
BseXI GCAGC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 218
Bsp143I GATC 2 cut(s) 84, 150
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 2 cut(s) 14, 65
BspCNI CTCAG 3 cut(s) 43, 94, 190
BssMI GATC 2 cut(s) 84, 150
Bst6I CTCTTC 2 cut(s) 183, 221
BstDEI CTNAG 4 cut(s) 30, 81, 177, 235
BstF5I GGATG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 87, 153
BstMBI GATC 2 cut(s) 84, 150
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BtsCI GGATG 1 cut(s) 89
CfoI GCGC 1 cut(s) 217
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 5, 34, 234, 266
CviKI_1 RGCY 4 cut(s) 5, 34, 234, 266
DdeI CTNAG 4 cut(s) 30, 81, 177, 235
DpnI GATC 2 cut(s) 86, 152
DpnII GATC 2 cut(s) 84, 150
Eam1104I CTCTTC 2 cut(s) 183, 221
EarI CTCTTC 2 cut(s) 183, 221
EciI GGCGGA 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 218
FaeI CATG 1 cut(s) 142
FaiI YATR 3 cut(s) 140, 273, 304
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 6, 267
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 6, 267
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 6, 267
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 4 cut(s) 37, 71, 77, 209
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 4 cut(s) 25, 76, 84, 180
Hpy188III TCNNGA 2 cut(s) 220, 259
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 30, 81, 177, 235
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 84, 150
LpnPI CCDG 2 cut(s) 81, 139
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 16, 276
MalI GATC 2 cut(s) 86, 152
MboI GATC 2 cut(s) 84, 150
MboII GAAGA 3 cut(s) 200, 235, 238
MflI RGATCY 1 cut(s) 84
MluCI AATT 1 cut(s) 159
MlyI GAGTC 2 cut(s) 31, 203
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 84, 150
NlaIII CATG 1 cut(s) 142
NspI RCATGY 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 218
PfeI GAWTC 2 cut(s) 71, 77
PkrI GCNGC 2 cut(s) 7, 268
PleI GAGTC 2 cut(s) 31, 203
PpsI GAGTC 2 cut(s) 31, 203
PsuI RGATCY 1 cut(s) 84
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 2 cut(s) 6, 267
Sau3AI GATC 2 cut(s) 84, 150
SchI GAGTC 2 cut(s) 31, 203
SetI ASST 2 cut(s) 36, 268
SfaNI GCATC 2 cut(s) 16, 276
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 143, 218
SmoI CTYRAG 2 cut(s) 143, 218
Sse9I AATT 1 cut(s) 159
SsiI CCGC 2 cut(s) 14, 65
TaqI TCGA 3 cut(s) 149, 219, 258
TasI AATT 1 cut(s) 159
TfiI GAWTC 2 cut(s) 71, 77
TseI GCWGC 2 cut(s) 5, 266
TspDTI ATGAA 2 cut(s) 180, 201
XceI RCATGY 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.