Rmu_sc0001986.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001986.1
OG0006779
Physical Location & Seq
Forward (+)
105430 .. 106037
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001986.1_g000027.1.cds

Sequence Viewer

Length: 441 bp
atggctgcctcaccgcctcagttcgatgctcagctgactctcctccctcatcctccaccggaatccgactctcagatctcatccctcctttacaagatttcgcaacaagttcaagcagaaatggaggacatgctcaagtcaatcagggaaattgatgaaaactcttctcagataacggaggagattgacgagtgcaaggactctgcactagagaagagagagagagagagagaggtgaatagtgagggactcagagatttgggtctgggggaggtgttgagacaccgatctgggcttgagatcgttgaccttgatgaacaccggcttcacattgctctgcagggcttgttggacatacgccagtctggctttgttggtggtcgtcgacgacatcgtttctcttcagtccacaaaaccgaaaatccaaaccttagaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

5.25

Isoelectric Point (pI)

76.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 385
AciI CCGC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 387
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 5
AsuHPI GGTGA 2 cut(s) 3, 247
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 338
BglI GCCNNNNNGGC 1 cut(s) 366
BglII AGATCT 1 cut(s) 75
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 7
BmsI GCATC 1 cut(s) 16
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 119, 317
BsaWI WCCGGW 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 330
BseGI GGATG 2 cut(s) 49, 80
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 5 cut(s) 32, 44, 86, 182, 265
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 32, 194
BsgI GTGCAG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 59, 322
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 75, 287, 300
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 5 cut(s) 31, 43, 85, 181, 264
BspMAI CTGCAG 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 321
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 321
BssMI GATC 3 cut(s) 75, 287, 300
Bst6I CTCTTC 3 cut(s) 169, 209, 406
BstDEI CTNAG 6 cut(s) 18, 30, 72, 168, 251, 431
BstF5I GGATG 2 cut(s) 49, 80
BstKTI GATC 3 cut(s) 78, 290, 303
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 3 cut(s) 75, 287, 300
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BtsCI GGATG 2 cut(s) 49, 80
Cfr10I RCCGGY 1 cut(s) 321
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 5, 34, 295, 325, 345, 369
CviKI_1 RGCY 6 cut(s) 5, 34, 295, 325, 345, 369
DdeI CTNAG 6 cut(s) 18, 30, 72, 168, 251, 431
DpnI GATC 3 cut(s) 77, 289, 302
DpnII GATC 3 cut(s) 75, 287, 300
Eam1104I CTCTTC 3 cut(s) 169, 209, 406
EarI CTCTTC 3 cut(s) 169, 209, 406
Eco57I CTGAAG 1 cut(s) 387
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 131, 356
FaqI GGGAC 1 cut(s) 261
FatI CATG 1 cut(s) 129
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 36, 67
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 6
HapII CCGG 2 cut(s) 59, 322
Hin1II CATG 1 cut(s) 133
HincII GTYRAC 2 cut(s) 307, 386
HindII GTYRAC 2 cut(s) 307, 386
HinfI GANTC 5 cut(s) 37, 62, 68, 200, 249
HpaII CCGG 2 cut(s) 59, 322
HphI GGTGA 2 cut(s) 3, 247
Hpy166II GTNNAC 3 cut(s) 307, 386, 409
Hpy188I TCNGA 4 cut(s) 67, 75, 171, 254
Hpy8I GTNNAC 3 cut(s) 307, 386, 409
Hpy99I CGWCG 2 cut(s) 387, 390
HpyCH4V TGCA 3 cut(s) 195, 206, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 6 cut(s) 18, 30, 72, 168, 251, 431
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 3 cut(s) 75, 287, 300
LpnPI CCDG 8 cut(s) 72, 130, 251, 276, 326, 335, 351, 374
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 209
MalI GATC 3 cut(s) 77, 289, 302
MboI GATC 3 cut(s) 75, 287, 300
MboII GAAGA 3 cut(s) 156, 226, 393
MflI RGATCY 1 cut(s) 75
MluCI AATT 2 cut(s) 150, 436
MlyI GAGTC 4 cut(s) 31, 62, 194, 243
MmeI TCCRAC 2 cut(s) 90, 330
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 59, 322
MwoI GCNNNNNNNGC 1 cut(s) 366
NdeII GATC 3 cut(s) 75, 287, 300
NlaIII CATG 1 cut(s) 133
NspI RCATGY 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 4 cut(s) 31, 62, 194, 243
PpsI GAGTC 4 cut(s) 31, 62, 194, 243
PstI CTGCAG 1 cut(s) 342
PsuI RGATCY 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 34
SalI GTCGAC 1 cut(s) 384
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 75, 287, 300
SchI GAGTC 4 cut(s) 31, 62, 194, 243
SetI ASST 5 cut(s) 36, 237, 276, 312, 432
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 338
SgrDI CGTCGACG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 134, 296
SmoI CTYRAG 2 cut(s) 134, 296
Sse9I AATT 2 cut(s) 150, 436
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 209
TaqI TCGA 2 cut(s) 24, 385
TasI AATT 2 cut(s) 150, 436
TfiI GAWTC 1 cut(s) 62
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 171, 330
TspGWI ACGGA 1 cut(s) 191
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 385
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.