AT5G26010

Serine/threonine phosphatases, family 2C, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013254
Physical Location & Seq
Reverse (-)
9085247 .. 9087585
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26010.1

Sequence Viewer

Length: 996 bp
ATGGGTCATTGCTTTTCGTTACCGTCTTCTCAATCGGAGATTCATGAGGATAATGAGCACGGTGATGGAAATGTGGTGTGTTATGGAGAAGAGTTCGGTTTAGATCAAGACCTTCCGGTTCATCGACTCGGTTCGGTCTGCTCCATACAAGGAACCAAAGTGCTTAACCAAGATCATGCTGTTCTTTACCAGGGATATGGAACAAGAGATACAGAGCTATGTGGAGTGTTTGATGGACACGGCAAAAATGGGCACATGGTGAGCAAAATGGTGAGGAATAGATTGCCATCGGTTTTGTTAGCACTAAAGGAAGAGCTAAACCAAGAATCTAATGTTTGTGAAGAAGAAGCTTCAAAATGGGAAAAGGCTTGTTTTACTGCCTTTAGACTCATTGATAGAGAGCTTAATCTTCAAGTCTTTAATTGCTCTTTCAGTGGCTCCACTGGTGTGGTTGCCATAACTCAGGGAGATGATCTTGTGATAGCGAACCTTGGTGATTCAAGGGCAGTATTGGGGACAATGACTGAAGATGGTGAGATCAAGGCAGTACAGTTAACATCAGACCTAACACCTGATGTTCCTAGTGAAGCAGAGAGGATCAGGATGTGCAAAGGTCGTGTTTTCGCAATGAAAACAGAACCAAGCAGCCAAAGGGTGTGGTTACCAAACCAAAACATACCAGGATTAGCCATGTCAAGAGCTTTTGGAGATTTCAGGCTCAAAGACCATGGTGTTATTGCGGTTCCTGAAATCTCTCAACACCGAATTACTTCTAAAGACCAGTTCCTTGTACTCGCTACTGACGGGGTTTGGGATATGCTTAGCAATGATGAAGTTGTATCGCTTATATGGAGTTCCGGGAAAAAGCAAGCTTCGGCCGCTAAAATGGTGGCGGAGGCGGCTGAAGCTGCATGGAAGAAAAGGCTTAAGTATACGAAGGTAGATGATATTACAGTAATATGTCTTTTCTTACAGAACAAGGAACAACCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

331

Amino Acids

36.52

Weight (kDa)

5.26

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 46 - 301 3.1e-45 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26010
fragaria_vesca FvH4_2g32170
malus_domestica MD08G1073400.v1.1
prunus_persica Prupe.1G414800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0310511
rosa_laevigata RLG00000010477
rosa_multiflora Rmu_sc0016392.1_g000006 Rmu_sc0020729.1_g000003 Rmu_sc0035020.1_g000002
rosa_roxburghii Rroxscaffold_7G00158470
rosa_rugosa Rorug06G0380900 Rorug06G0381000 Rorug06G0381100
rosa_samantha Rh6AG495000 Rh6BG504600 Rh6CG509900 Rh6DG495900
rosa_wichuraiana Rw6G043050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 932
AciI CCGC 4 cut(s) 740, 879, 893, 899
AclWI GGATC 1 cut(s) 605
AcoI YGGCCR 1 cut(s) 876
AcuI CTGAAG 2 cut(s) 546, 924
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 2 cut(s) 549, 792
AflII CTTAAG 1 cut(s) 926
AgsI TTSAA 3 cut(s) 354, 413, 501
AjnI CCWGG 2 cut(s) 189, 679
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 7 cut(s) 217, 316, 350, 403, 701, 872, 908
AluI AGCT 7 cut(s) 217, 316, 350, 403, 701, 872, 908
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 1 cut(s) 605
AoxI GGCC 1 cut(s) 876
ApeKI GCWGC 2 cut(s) 645, 908
Asp700I GAANNNNTTC 1 cut(s) 769
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 5 cut(s) 74, 271, 283, 506, 545
BaeGI GKGCMC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 657, 895
BccI CCATC 4 cut(s) 59, 227, 295, 524
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 2 cut(s) 191, 681
BcnI CCSGG 1 cut(s) 859
BfaI CTAG 1 cut(s) 582
BfrI CTTAAG 1 cut(s) 926
BisI GCNGC 4 cut(s) 646, 879, 900, 909
BlpI GCTNAGC 1 cut(s) 821
BlsI GCNGC 4 cut(s) 647, 880, 901, 910
Bme1390I CCNGG 3 cut(s) 191, 681, 859
BmiI GGNNCC 3 cut(s) 154, 439, 744
BmrFI CCNGG 3 cut(s) 191, 681, 859
BpiI GAAGAC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 190, 490, 727
BsaWI WCCGGW 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 448, 781
Bse3DI GCAATG 3 cut(s) 7, 633, 832
Bse8I GATNNNNATC 1 cut(s) 286
BseBI CCWGG 2 cut(s) 191, 681
BseDI CCNNGG 3 cut(s) 190, 490, 727
BseGI GGATG 1 cut(s) 609
BseJI GATNNNNATC 1 cut(s) 286
BseMI GCAATG 3 cut(s) 7, 633, 832
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 2 cut(s) 448, 781
BseSI GKGCMC 1 cut(s) 255
BseX3I CGGCCG 1 cut(s) 876
BseXI GCAGC 2 cut(s) 657, 895
Bsh1285I CGRYCG 1 cut(s) 879
BshFI GGCC 1 cut(s) 878
BsiEI CGRYCG 1 cut(s) 879
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 116, 858
BslFI GGGAC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 1 cut(s) 878
Bsp1286I GDGCHC 2 cut(s) 60, 255
Bsp143I GATC 5 cut(s) 103, 172, 472, 537, 597
Bsp1720I GCTNAGC 1 cut(s) 821
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 4 cut(s) 740, 879, 893, 899
BspANI GGCC 1 cut(s) 878
BspCNI CTCAG 1 cut(s) 475
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 154, 439, 744
BspPI GGATC 1 cut(s) 605
BspQI GCTCTTC 1 cut(s) 306
BspTI CTTAAG 1 cut(s) 926
BsrDI GCAATG 3 cut(s) 7, 633, 832
BsrI ACTGG 2 cut(s) 448, 781
BssECI CCNNGG 3 cut(s) 190, 490, 727
BssMI GATC 5 cut(s) 103, 172, 472, 537, 597
BssNAI GTATAC 1 cut(s) 933
BssT1I CCWWGG 2 cut(s) 490, 727
Bst1107I GTATAC 1 cut(s) 933
Bst2UI CCWGG 2 cut(s) 191, 681
Bst4CI ACNGT 4 cut(s) 24, 62, 552, 955
Bst6I CTCTTC 2 cut(s) 84, 306
BstAFI CTTAAG 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 2 cut(s) 462, 821
BstDSI CCRYGG 1 cut(s) 727
BstEII GGTNACC 1 cut(s) 660
BstF5I GGATG 1 cut(s) 609
BstKTI GATC 5 cut(s) 106, 175, 475, 540, 600
BstMBI GATC 5 cut(s) 103, 172, 472, 537, 597
BstMCI CGRYCG 1 cut(s) 879
BstMWI GCNNNNNNNGC 4 cut(s) 878, 899, 905, 908
BstNI CCWGG 2 cut(s) 191, 681
BstPI GGTNACC 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 189, 679, 857
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 657, 895
BstV2I GAAGAC 1 cut(s) 18
BstXI CCANNNNNNTGG 2 cut(s) 197, 448
BstZ17I GTATAC 1 cut(s) 933
BstZI CGGCCG 1 cut(s) 876
BsuRI GGCC 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 439, 441
Cac8I GCNNGC 1 cut(s) 870
CciI TCATGA 1 cut(s) 43
Csp6I GTAC 2 cut(s) 548, 791
CspCI CAANNNNNGTGG 2 cut(s) 638, 673
CviAII CATG 6 cut(s) 44, 176, 256, 691, 728, 912
CviQI GTAC 2 cut(s) 548, 791
DdeI CTNAG 2 cut(s) 462, 821
DpnI GATC 5 cut(s) 105, 174, 474, 539, 599
DpnII GATC 5 cut(s) 103, 172, 472, 537, 597
DraIII CACNNNGTG 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 876
EagI CGGCCG 1 cut(s) 876
Eam1104I CTCTTC 2 cut(s) 84, 306
EarI CTCTTC 2 cut(s) 84, 306
EciI GGCGGA 1 cut(s) 908
EclXI CGGCCG 1 cut(s) 876
Eco130I CCWWGG 2 cut(s) 490, 727
Eco52I CGGCCG 1 cut(s) 876
Eco57I CTGAAG 2 cut(s) 546, 924
Eco91I GGTNACC 1 cut(s) 660
EcoO65I GGTNACC 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 189, 679
EcoT14I CCWWGG 2 cut(s) 490, 727
ErhI CCWWGG 2 cut(s) 490, 727
FaeI CATG 6 cut(s) 47, 179, 259, 694, 731, 915
FaqI GGGAC 1 cut(s) 529
FatI CATG 6 cut(s) 43, 175, 255, 690, 727, 911
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 4 cut(s) 646, 879, 900, 909
FokI GGATG 1 cut(s) 616
Fsp4HI GCNGC 4 cut(s) 646, 879, 900, 909
FspBI CTAG 1 cut(s) 582
GluI GCNGC 4 cut(s) 646, 879, 900, 909
HaeIII GGCC 1 cut(s) 878
HapII CCGG 2 cut(s) 116, 858
Hin1II CATG 6 cut(s) 47, 179, 259, 694, 731, 915
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HindIII AAGCTT 2 cut(s) 348, 870
HinfI GANTC 5 cut(s) 40, 126, 326, 387, 497
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 2 cut(s) 116, 858
HphI GGTGA 5 cut(s) 74, 271, 283, 506, 545
Hpy166II GTNNAC 2 cut(s) 555, 933
Hpy188I TCNGA 2 cut(s) 37, 562
Hpy188III TCNNGA 5 cut(s) 44, 107, 601, 696, 746
Hpy8I GTNNAC 2 cut(s) 555, 933
HpyAV CCTTC 2 cut(s) 122, 931
HpyCH4III ACNGT 4 cut(s) 24, 62, 552, 955
HpyCH4V TGCA 2 cut(s) 609, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 878, 899, 905, 908
HpyF3I CTNAG 2 cut(s) 462, 821
Hsp92II CATG 6 cut(s) 47, 179, 259, 694, 731, 915
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 5 cut(s) 103, 172, 472, 537, 597
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 146, 443
Lsp1109I GCAGC 2 cut(s) 657, 895
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 18, 660
MalI GATC 5 cut(s) 105, 174, 474, 539, 599
MboI GATC 5 cut(s) 103, 172, 472, 537, 597
MboII GAAGA 8 cut(s) 18, 101, 323, 353, 356, 401, 539, 928
MhlI GDGCHC 2 cut(s) 60, 255
MluCI AATT 2 cut(s) 421, 765
MlyI GAGTC 2 cut(s) 120, 381
MnlI CCTC 4 cut(s) 40, 267, 588, 889
MroXI GAANNNNTTC 1 cut(s) 769
MseI TTAA 5 cut(s) 165, 405, 420, 554, 927
MslI CAYNNNNRTG 2 cut(s) 63, 446
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 2 cut(s) 116, 858
MspR9I CCNGG 3 cut(s) 191, 681, 859
MvaI CCWGG 2 cut(s) 191, 681
MwoI GCNNNNNNNGC 4 cut(s) 878, 899, 905, 908
NciI CCSGG 1 cut(s) 859
NcoI CCATGG 1 cut(s) 727
NdeII GATC 5 cut(s) 103, 172, 472, 537, 597
NlaIII CATG 6 cut(s) 47, 179, 259, 694, 731, 915
NlaIV GGNNCC 3 cut(s) 154, 439, 744
OliI CACNNNNGTG 1 cut(s) 446
PagI TCATGA 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 3 cut(s) 40, 326, 497
PfoI TCCNGGA 1 cut(s) 857
PkrI GCNGC 4 cut(s) 647, 880, 901, 910
PleI GAGTC 2 cut(s) 120, 381
PpsI GAGTC 2 cut(s) 120, 381
Psp6I CCWGG 2 cut(s) 189, 679
PspEI GGTNACC 1 cut(s) 660
PspGI CCWGG 2 cut(s) 189, 679
PspN4I GGNNCC 3 cut(s) 154, 439, 744
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
RsaI GTAC 2 cut(s) 549, 792
RsaNI GTAC 2 cut(s) 548, 791
RseI CAYNNNNRTG 2 cut(s) 63, 446
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 5 cut(s) 165, 405, 420, 554, 927
SatI GCNGC 4 cut(s) 646, 879, 900, 909
Sau3AI GATC 5 cut(s) 103, 172, 472, 537, 597
SchI GAGTC 2 cut(s) 120, 381
ScrFI CCNGG 3 cut(s) 191, 681, 859
SduI GDGCHC 2 cut(s) 60, 255
SmiMI CAYNNNNRTG 2 cut(s) 63, 446
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 2 cut(s) 421, 765
SsiI CCGC 4 cut(s) 740, 879, 893, 899
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 189, 679, 857
StyI CCWWGG 2 cut(s) 490, 727
TaaI ACNGT 4 cut(s) 24, 62, 552, 955
TaqI TCGA 1 cut(s) 124
TaqII GACCGA 1 cut(s) 124
TasI AATT 2 cut(s) 421, 765
TatI WGTACW 2 cut(s) 547, 790
TauI GCSGC 2 cut(s) 881, 902
TfiI GAWTC 3 cut(s) 40, 326, 497
Tru1I TTAA 5 cut(s) 165, 405, 420, 554, 927
Tru9I TTAA 5 cut(s) 165, 405, 420, 554, 927
TscAI CASTG 2 cut(s) 439, 448
TseI GCWGC 2 cut(s) 645, 908
TspDTI ATGAA 4 cut(s) 32, 110, 644, 846
TspRI CASTG 2 cut(s) 439, 448
Vha464I CTTAAG 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 769
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.