Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035020.1

Orthogroup ID

OG0013254

Physical Location & Seq

Genomic Coordinates Forward (+)

4444 .. 5748

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035020.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgggaatctgcatatcctgctcagattcaggtcaaaagattcaagatggcaatgaaaatgcaatgttctttggaaagaacagtggttcttttgggactcagagccttggttcgcttgattctaaggaaggaagcaaaggactaaaccaagacagtgccattctttaccagggctatggagttggagattcatctttctgtggagtttttgatgggcatggaaagaacggtcacatagtgagtcagatggtgaagaatcacctaccagcactactacagagccaaatggaagctcttgaacaagtcactttagtaacacaatcagatggtgaacaaaatcacaacgacgaaacggatactgaatcagaaccaagcaagaactttgataagtgggaagaggcactggttaatgccttcaaagtaatggacaaggagattaagctccaagaaaatttggactgttcttgtagtggaagcactgctgttgttgtcataagacagggcgaggacctttttatagctaacttgggtgactcgagagccgtcctgggaacaatgactgagaatggaattgaaggcattcaattaaccactgatctaaagcctggtttaccaaatgaagcagaacgaataagagcatgcaacggtcgagtgattgcactagaacacgaaaaacacatccagagagtgtggttgccccatgaattccttccaggcctagccatgtcccgagcttttggggactttgtactcaaagattatggcatcattgccgcccctgatgtctcccatcatcgcttgacctccgaagatcagttcattgttcttgcaactgatggggtatgggatgtgcttagtaacaatgaagttgcgtctattgtgtgggaagccgagagtgcagaggcagctgctaggactgtgactgagacggctagagccacatggagcacaaagtacccaacttctaagatagacgactgcactgtggtttgcctgtttttcagttcattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

337

Amino Acids

36.69

Weight (kDa)

4.66

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26010
fragaria_vesca	FvH4_2g32170
malus_domestica	MD08G1073400.v1.1
prunus_persica	Prupe.1G414800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310511
rosa_laevigata	RLG00000010477
rosa_multiflora	Rmu_sc0016392.1_g000006 Rmu_sc0020729.1_g000003 Rmu_sc0035020.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158470
rosa_rugosa	Rorug06G0380900 Rorug06G0381000 Rorug06G0381100
rosa_samantha	Rh6AG495000 Rh6BG504600 Rh6CG509900 Rh6DG495900
rosa_wichuraiana	Rw6G043050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	774
AcsI	RAATTY	2 cut(s)	451, 704
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	750, 956
AgsI	TTSAA	5 cut(s)	44, 299, 418, 575, 584
AjnI	CCWGG	4 cut(s)	168, 546, 604, 712
AluBI	AGCT	5 cut(s)	293, 442, 521, 734, 908
AluI	AGCT	5 cut(s)	293, 442, 521, 734, 908
Alw21I	GWGCWC	1 cut(s)	950
Alw26I	GTCTC	2 cut(s)	790, 920
Ama87I	CYCGRG	2 cut(s)	535, 729
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	2 cut(s)	905, 908
ApoI	RAATTY	2 cut(s)	451, 704
Asp700I	GAANNNNTTC	2 cut(s)	579, 708
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	251, 262, 341, 542
AvaI	CYCGRG	2 cut(s)	535, 729
AvaII	GGWCC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	950
BbvI	GCAGC	2 cut(s)	895, 917
BccI	CCATC	6 cut(s)	41, 206, 241, 320, 798, 830
BceAI	ACGGC	2 cut(s)	527, 945
BciT130I	CCWGG	4 cut(s)	170, 548, 606, 714
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	790, 920
BfaI	CTAG	4 cut(s)	662, 719, 912, 933
BfmI	CTRYAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	774, 906, 909
BlsI	GCNGC	3 cut(s)	775, 907, 910
Bme1390I	CCNGG	4 cut(s)	170, 548, 606, 714
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	2 cut(s)	535, 729
BmgT120I	GGNCC	1 cut(s)	508
BmrFI	CCNGG	4 cut(s)	170, 548, 606, 714
BmsI	GCATC	1 cut(s)	774
BsaJI	CCNNGG	3 cut(s)	106, 169, 547
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	3 cut(s)	58, 69, 768
BseBI	CCWGG	4 cut(s)	170, 548, 606, 714
BseDI	CCNNGG	3 cut(s)	106, 169, 547
BseGI	GGATG	2 cut(s)	678, 853
BseMI	GCAATG	3 cut(s)	58, 69, 768
BseMII	CTCAG	4 cut(s)	36, 113, 552, 915
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	895, 917
BsgI	GTGCAG	2 cut(s)	918, 964
Bsh1285I	CGRYCG	1 cut(s)	649
BshFI	GGCC	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	950
BsiHKCI	CYCGRG	2 cut(s)	535, 729
BslFI	GGGAC	3 cut(s)	109, 712, 755
BsmAI	GTCTC	2 cut(s)	790, 920
BsmBI	CGTCTC	1 cut(s)	920
BsmFI	GGGAC	3 cut(s)	109, 712, 755
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	717
BsoBI	CYCGRG	2 cut(s)	535, 729
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	2 cut(s)	595, 811
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	4 cut(s)	35, 112, 553, 916
BsrDI	GCAATG	3 cut(s)	58, 69, 768
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	106, 169, 547
BssMI	GATC	2 cut(s)	595, 811
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	4 cut(s)	170, 548, 606, 714
Bst4CI	ACNGT	7 cut(s)	83, 155, 230, 461, 647, 919, 985
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	7 cut(s)	22, 99, 123, 561, 854, 924, 966
BstF5I	GGATG	2 cut(s)	678, 853
BstKTI	GATC	2 cut(s)	598, 814
BstMAI	GTCTC	2 cut(s)	790, 920
BstMBI	GATC	2 cut(s)	595, 811
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 896, 905
BstNI	CCWGG	4 cut(s)	170, 548, 606, 714
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	4 cut(s)	168, 546, 604, 712
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	895, 917
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	2 cut(s)	678, 853
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	6 cut(s)	88, 160, 401, 477, 591, 981
Cac8I	GCNNGC	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	2 cut(s)	749, 955
CviAII	CATG	5 cut(s)	218, 639, 701, 724, 942
CviQI	GTAC	2 cut(s)	749, 955
DdeI	CTNAG	7 cut(s)	22, 99, 123, 561, 854, 924, 966
DpnI	GATC	2 cut(s)	597, 813
DpnII	GATC	2 cut(s)	595, 811
DraIII	CACNNNGTG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	508
Eco88I	CYCGRG	2 cut(s)	535, 729
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	4 cut(s)	168, 546, 604, 712
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	5 cut(s)	221, 642, 704, 727, 945
FaqI	GGGAC	3 cut(s)	109, 712, 755
FatI	CATG	5 cut(s)	217, 638, 700, 723, 941
Fnu4HI	GCNGC	3 cut(s)	774, 906, 909
FokI	GGATG	2 cut(s)	665, 860
Fsp4HI	GCNGC	3 cut(s)	774, 906, 909
FspBI	CTAG	4 cut(s)	662, 719, 912, 933
GluI	GCNGC	3 cut(s)	774, 906, 909
HaeIII	GGCC	1 cut(s)	717
HgaI	GACGC	1 cut(s)	861
Hin1II	CATG	5 cut(s)	221, 642, 704, 727, 945
HphI	GGTGA	4 cut(s)	251, 262, 341, 542
Hpy166II	GTNNAC	2 cut(s)	332, 611
Hpy188I	TCNGA	6 cut(s)	25, 102, 246, 325, 367, 808
Hpy188III	TCNNGA	5 cut(s)	44, 296, 537, 682, 729
Hpy8I	GTNNAC	2 cut(s)	332, 611
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	122, 424, 569, 719
HpyCH4III	ACNGT	7 cut(s)	83, 155, 230, 461, 647, 919, 985
HpyCH4V	TGCA	7 cut(s)	12, 62, 642, 659, 830, 899, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 896, 905
HpyF3I	CTNAG	7 cut(s)	22, 99, 123, 561, 854, 924, 966
Hsp92II	CATG	5 cut(s)	221, 642, 704, 727, 945
Kzo9I	GATC	2 cut(s)	595, 811
LmnI	GCTCC	2 cut(s)	447, 945
Lsp1109I	GCAGC	2 cut(s)	895, 917
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	4 cut(s)	662, 719, 912, 933
MaeIII	GTNAC	6 cut(s)	230, 304, 313, 530, 857, 919
MalI	GATC	2 cut(s)	597, 813
MboI	GATC	2 cut(s)	595, 811
MboII	GAAGA	3 cut(s)	265, 407, 821
MhlI	GDGCHC	1 cut(s)	950
MluCI	AATT	4 cut(s)	451, 570, 584, 704
MlyI	GAGTC	3 cut(s)	91, 250, 527
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	391, 499, 814, 895
MroXI	GAANNNNTTC	2 cut(s)	579, 708
MseI	TTAA	3 cut(s)	408, 438, 587
MspA1I	CMGCKG	1 cut(s)	908
MspR9I	CCNGG	4 cut(s)	170, 548, 606, 714
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	4 cut(s)	170, 548, 606, 714
MwoI	GCNNNNNNNGC	3 cut(s)	18, 896, 905
NdeII	GATC	2 cut(s)	595, 811
NlaIII	CATG	5 cut(s)	221, 642, 704, 727, 945
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	4 cut(s)	230, 304, 530, 919
NspI	RCATGY	1 cut(s)	642
PaeI	GCATGC	1 cut(s)	642
PaeR7I	CTCGAG	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	717
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	579, 708
PfeI	GAWTC	7 cut(s)	6, 26, 40, 119, 188, 256, 362
PkrI	GCNGC	3 cut(s)	775, 907, 910
PleI	GAGTC	3 cut(s)	91, 249, 527
PpsI	GAGTC	3 cut(s)	91, 249, 527
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	4 cut(s)	168, 546, 604, 712
PspGI	CCWGG	4 cut(s)	168, 546, 604, 712
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	2 cut(s)	750, 956
RsaNI	GTAC	2 cut(s)	749, 955
SaqAI	TTAA	3 cut(s)	408, 438, 587
SatI	GCNGC	3 cut(s)	774, 906, 909
Sau3AI	GATC	2 cut(s)	595, 811
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	3 cut(s)	91, 250, 527
ScrFI	CCNGG	4 cut(s)	170, 548, 606, 714
SduI	GDGCHC	1 cut(s)	950
SetI	ASST	9 cut(s)	34, 264, 295, 444, 513, 523, 736, 806, 910
SfaNI	GCATC	1 cut(s)	774
SfcI	CTRYAG	1 cut(s)	275
Sfr274I	CTCGAG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	4 cut(s)	451, 570, 584, 704
SseBI	AGGCCT	1 cut(s)	717
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	4 cut(s)	662, 719, 912, 933
StuI	AGGCCT	1 cut(s)	717
StyD4I	CCNGG	4 cut(s)	168, 546, 604, 712
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	7 cut(s)	83, 155, 230, 461, 647, 919, 985
TaqI	TCGA	2 cut(s)	536, 649
TasI	AATT	4 cut(s)	451, 570, 584, 704
TatI	WGTACW	1 cut(s)	748
TauI	GCSGC	1 cut(s)	776
TfiI	GAWTC	7 cut(s)	6, 26, 40, 119, 188, 256, 362
Tru1I	TTAA	3 cut(s)	408, 438, 587
Tru9I	TTAA	3 cut(s)	408, 438, 587
TscAI	CASTG	6 cut(s)	88, 160, 408, 484, 598, 988
TseFI	GTSAC	4 cut(s)	230, 304, 530, 919
TseI	GCWGC	2 cut(s)	905, 908
Tsp45I	GTSAC	4 cut(s)	230, 304, 530, 919
TspDTI	ATGAA	7 cut(s)	69, 180, 633, 717, 808, 879, 996
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	6 cut(s)	88, 160, 408, 484, 598, 988
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	451, 704
XceI	RCATGY	1 cut(s)	642
XhoI	CTCGAG	1 cut(s)	535
XmnI	GAANNNNTTC	2 cut(s)	579, 708
XspI	CTAG	4 cut(s)	662, 719, 912, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.