Rorug06G0380900

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
52696606 .. 52696830
225 bp
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UTR
Exon/CDS
Intron
Rorug06G0380900.1

Sequence Viewer

Length: 225 bp
ATGGCGGACAAGGCAATGAGGAACAACTCATGCAGTAACTATAAGGGGGTTGCTGTATCGGGCTCTAAACCAATGGTTGCAACTGCTAGTGTCATACCAGCAAAAAGGAGGTCAGTGAAACGAATGATATTCGATGACATGGTGGAATCTATAGCCTCTTTCTTTCGTCGCTGTGCATTGTCTTCTTCATCAAATGCCAAGAAGAGTACCGGCGGTAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

7.98

Weight (kDa)

10.71

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013254)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 217
AciI CCGC 2 cut(s) 5, 213
AfaI GTAC 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 174
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 65
BspACI CCGC 2 cut(s) 5, 213
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 209
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 30, 139
CviJI RGCY 2 cut(s) 63, 155
CviKI_1 RGCY 2 cut(s) 63, 155
CviQI GTAC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 2 cut(s) 33, 142
FaiI YATR 5 cut(s) 31, 42, 95, 140, 152
FatI CATG 2 cut(s) 29, 138
FblI GTMKAC 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 1 cut(s) 87
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 33, 142
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 218
Hpy99I CGWCG 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 33, 80, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 33, 142
LpnPI CCDG 1 cut(s) 111
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 35
MboII GAAGA 3 cut(s) 174, 177, 214
MhlI GDGCHC 1 cut(s) 65
MnlI CCTC 3 cut(s) 12, 102, 166
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 33, 142
PfeI GAWTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 65
SetI ASST 1 cut(s) 113
SfcI CTRYAG 1 cut(s) 150
SgeI CNNG 7 cut(s) 22, 42, 72, 99, 110, 151, 211
SsiI CCGC 2 cut(s) 5, 213
SspMI CTAG 1 cut(s) 87
TaqI TCGA 1 cut(s) 132
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.