Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013254

Physical Location & Seq

Genomic Coordinates Forward (+)

36085540 .. 36087576

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGACTCTGCATATCTTCTTCAGCTCACAAAATTCAGGATGGCCATGAAGCTCCAATGTCCTTTGAAAGGACTGACGATTCTAATGGAATTCAGATGCACGGTTCCCTTTATTCTTTGGAAGGAAGCAAAGGAGTAAACCAAGATAGTGCCATTCTTTACCAGGGCTATGGATTGGAAGCTGAAGCTTTCTGTGGAGTTTTCGATGGACATGGAAGATTCGGGCACCGAGTGAGTCAGCTGGTGAGAAGCAACCTGCCATCACTCTTACAAGGCCAGATGAAAGCTCTTGATCAACAAGCCATTGCAGTAGCAGAGGATGATGATTCGAAAAATCACATTGACAGAATAGAAACCGAGTCAGAAGATTCAGAACCAAGCAAGAAATTTCACAAATGGAAAGAAGCCTTTGTTAGCTCCTTCAAAGTCATGGACAAGGAGATTAAGCTTCAAGAAAATCTGGACAGCTCTTGTAGTGGAACCACTGCTGTTGTTGTCATAAAACAGGGTGAGGATCTTTTTATAGCTAATCTGGGTGACTCAAGGGCAGTCCTAGGAACCACTAGAGAGAATGGAATTGAGGCCATTCAATTGACCACTGATCTAAAGCCTGCTTTACCTAGTGAAGCAGAACGAATAAGGGCGTGTGATGGTCGAGTGGTTGCACTAAAGCAAGAACCTAACATCCAAAGAGTGTGGTTGCCTCATATTGACCTCCCAGGCCTAGCCATGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

246

Amino Acids

26.84

Weight (kDa)

5.1

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26010
fragaria_vesca	FvH4_2g32170
malus_domestica	MD08G1073400.v1.1
prunus_persica	Prupe.1G414800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310511
rosa_laevigata	RLG00000010477
rosa_multiflora	Rmu_sc0016392.1_g000006 Rmu_sc0020729.1_g000003 Rmu_sc0035020.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158470
rosa_rugosa	Rorug06G0380900 Rorug06G0381000 Rorug06G0381100
rosa_samantha	Rh6AG495000 Rh6BG504600 Rh6CG509900 Rh6DG495900
rosa_wichuraiana	Rw6G043050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	522
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	33, 90, 386
AcuI	CTGAAG	2 cut(s)	6, 204
AdeI	CACNNNGTG	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	68, 424, 452, 590
AjnI	CCWGG	2 cut(s)	162, 718
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AlwI	GGATC	1 cut(s)	522
AoxI	GGCC	4 cut(s)	43, 274, 582, 721
ApoI	RAATTY	3 cut(s)	33, 90, 386
AspA2I	CCTAGG	1 cut(s)	553
AsuHPI	GGTGA	3 cut(s)	256, 521, 548
AsuII	TTCGAA	1 cut(s)	329
AvrII	CCTAGG	1 cut(s)	553
BaeGI	GKGCMC	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	225
BccI	CCATC	4 cut(s)	35, 200, 268, 644
BciT130I	CCWGG	2 cut(s)	164, 720
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	4 cut(s)	554, 564, 621, 725
BfuAI	ACCTGC	1 cut(s)	264
BlnI	CCTAGG	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	164, 720
BmiI	GGNNCC	4 cut(s)	106, 227, 481, 559
BmrFI	CCNGG	2 cut(s)	164, 720
BmsI	GCATC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	163, 553, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	164, 720
BseDI	CCNNGG	3 cut(s)	163, 553, 718
BseGI	GGATG	3 cut(s)	46, 325, 684
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	228
BshFI	GGCC	4 cut(s)	45, 276, 584, 723
BshNI	GGYRCC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	45, 276, 584, 723
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	292, 514, 601
BspANI	GGCC	4 cut(s)	45, 276, 584, 723
BspLI	GGNNCC	4 cut(s)	106, 227, 481, 559
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	522
BspT104I	TTCGAA	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	163, 553, 718
BssMI	GATC	3 cut(s)	292, 514, 601
BssT1I	CCWWGG	1 cut(s)	553
Bst2UI	CCWGG	2 cut(s)	164, 720
Bst4CI	ACNGT	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	612
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	46, 325, 684
BstKTI	GATC	3 cut(s)	295, 517, 604
BstMBI	GATC	3 cut(s)	292, 514, 601
BstNI	CCWGG	2 cut(s)	164, 720
BstSCI	CCNGG	2 cut(s)	162, 718
BstSLI	GKGCMC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	4 cut(s)	45, 276, 584, 723
BtsCI	GGATG	3 cut(s)	46, 325, 684
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	483, 597
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	612
CspCI	CAANNNNNGTGG	4 cut(s)	472, 507, 677, 712
CviAII	CATG	4 cut(s)	47, 212, 430, 730
DpnI	GATC	3 cut(s)	294, 516, 603
DpnII	GATC	3 cut(s)	292, 514, 601
DraIII	CACNNNGTG	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	553
Eco147I	AGGCCT	1 cut(s)	723
Eco57I	CTGAAG	2 cut(s)	6, 204
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	162, 718
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	4 cut(s)	50, 215, 433, 733
FaiI	YATR	9 cut(s)	14, 48, 171, 213, 431, 500, 524, 708, 731
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	46, 211, 429, 729
FbaI	TGATCA	1 cut(s)	292
FokI	GGATG	3 cut(s)	53, 332, 671
FspBI	CTAG	4 cut(s)	554, 564, 621, 725
HaeIII	GGCC	4 cut(s)	45, 276, 584, 723
Hin1II	CATG	4 cut(s)	50, 215, 433, 733
HindIII	AAGCTT	2 cut(s)	186, 446
HinfI	GANTC	8 cut(s)	6, 80, 219, 235, 326, 359, 368, 539
HphI	GGTGA	3 cut(s)	256, 521, 548
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	96, 364, 373
Hpy188III	TCNNGA	5 cut(s)	38, 290, 452, 461, 735
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	116, 430
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	12, 100, 308, 665
Hsp92II	CATG	4 cut(s)	50, 215, 433, 733
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	292, 514, 601
LmnI	GCTCC	2 cut(s)	58, 422
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	4 cut(s)	554, 564, 621, 725
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	294, 516, 603
MboI	GATC	3 cut(s)	292, 514, 601
MboII	GAAGA	4 cut(s)	9, 12, 228, 377
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	5 cut(s)	33, 90, 386, 576, 590
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	244, 368, 533
MnlI	CCTC	5 cut(s)	310, 505, 574, 714, 725
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	164, 720
MunI	CAATTG	1 cut(s)	590
MvaI	CCWGG	2 cut(s)	164, 720
NdeII	GATC	3 cut(s)	292, 514, 601
NlaIII	CATG	4 cut(s)	50, 215, 433, 733
NlaIV	GGNNCC	4 cut(s)	106, 227, 481, 559
NmuCI	GTSAC	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	723
PfeI	GAWTC	4 cut(s)	80, 219, 326, 368
PleI	GAGTC	3 cut(s)	243, 367, 533
PpsI	GAGTC	3 cut(s)	243, 367, 533
Psp6I	CCWGG	2 cut(s)	162, 718
PspGI	CCWGG	2 cut(s)	162, 718
PspN4I	GGNNCC	4 cut(s)	106, 227, 481, 559
PsuI	RGATCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	292, 514, 601
SchI	GAGTC	3 cut(s)	244, 368, 533
ScrFI	CCNGG	2 cut(s)	164, 720
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	5 cut(s)	33, 90, 386, 576, 590
SseBI	AGGCCT	1 cut(s)	723
SspMI	CTAG	4 cut(s)	554, 564, 621, 725
StuI	AGGCCT	1 cut(s)	723
StyD4I	CCNGG	2 cut(s)	162, 718
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	204, 329, 655
TasI	AATT	5 cut(s)	33, 90, 386, 576, 590
TfiI	GAWTC	4 cut(s)	80, 219, 326, 368
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	490, 604
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	63, 296
TspRI	CASTG	2 cut(s)	490, 604
XagI	CCTNNNNNAGG	1 cut(s)	67
XapI	RAATTY	3 cut(s)	33, 90, 386
XmaJI	CCTAGG	1 cut(s)	553
XspI	CTAG	4 cut(s)	554, 564, 621, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.