Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005987

Physical Location & Seq

Genomic Coordinates Forward (+)

9377249 .. 9380063

Gene Structure 2815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCGTCGTCTCTATCTCCACCGGAAGAAGCTTCGTATCACCACCGTCATACCAAAAGGTACACCTCCTCCGCTTCCTCCGCTTCCTCCACCACCAACGGAACCGTCGAATCATCGGTTTCCGATTTCGTCAAACGTCCCAAAATCTCTCATCCGAATTACATATCAAGTTCCGAGATCGAATCAGAGTTTTCTCATCACGATCCAGATTTCGCAAGAATCAACAACGGTAGTTTTGGTTGTTGTCCGTCATCAATCCTAGCTTTACAACGAGATTGGCAGCTCCGGTTCCTTCGTCAACCGGATCGATTCTATTTCGACGAACTCAAACCAAAAATCTCCGATTCTAGATCTGTAATCAAACGGTTAATAAACGCCGAGCATGACGATGAAGTCTCGATCGTCGATAACGCAACAACCGCAGCTGCAATCGTTCTTCAACAAACCGCTTGGGCTTTTCGTGAAGGTCGGTTCGATAAAGGCGACGCGGTGGTTATGCTTCATTACGCTTATGGCTCTGTGAAGAAATCTGTTGAAGCGTATGTTACACGCTCCGGTGGACACGTCACCGAGGTACAGTTACCTTTTCCGGTTATTTCGGCGGATGAGATTATTGACCGGTTTAGGATTGGTTTAGAGTCTGGTAAAGCGAATGGTAGGAGAGTTAGGTTAGCTTTGATTGATCATGTGACTTCTATGCCAAGTGTTGTGATTCCTATTAAAGAGCTTGTGAAGATTTGTAGAAGAGAAGGTGTTGACCAAGTTTTTGTTGATGCTGCTCATGGGATAGGTTGTGTTGATGTTGATATGAAGGAGATTGGTGCTGATTTCTATACTAGTAATCTTCATAAGTGGTTTTTCGCACCGCCTTCTGTTGCTTTCTTGTATTGTAGGAAATCGAGTAATGGTGGTGTTGCGGATTTGCATCATCCCGTTGTTTCGAATGAGTATGGGAACGGTTTGGCGGTTGAGAGTTCGTGGGTTGGAACTAGAGATTATAGTGCTCAGTTGGTGGTTCCTTCGATATTGGAGTTTGTAAATCGGTTTGAAGGCGGGATTGATGGTATTAAGAAGAGGAATCATGAGTCTGTTGTTGAGATGGGTCAAATGTTGGTTAAGTCTTGGGGGACTCAGCTCGGTTGTCCCCCTGAGATGTGTGCGAGTATGATCATGGTTGGGTTGCCAGTGTGTTTAGGAGTGTCGAGTGAGTCGGATGTTTTGAAGCTTAGAACGTTTTTAAGAGAAAAGTTCAGAATTGAAATCCCAATCTACTTTAGGCCACCAGGGGATGGAGAGATTGATCCGATCACGGGATATGTGCGTATTTCTTTTCAAGTTTACAACAAACCTGAGGATTATCATAGGCTCAGGGACGCAATAAACGGGCTTGTTAGAGATGGGTTCAAATGCACGTCTCTATCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019448 GO:0019450 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046439 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

475

Amino Acids

52.91

Weight (kDa)

6.47

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	111 - 379	5.7e-17	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26600 AT5G26600
fragaria_vesca	FvH4_6g08451 FvH4_6g08451 FvH4_6g08451 FvH4_6g08451
malus_domestica	MD04G1186700.v1.1 MD12G1200100.v1.1
prunus_persica	Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0320191 RchiOBHm_Chr2g0094871 RchiOBHm_Chr3g0458521 RchiOBHm_Chr5g0036671
rosa_laevigata	RLG00000025151
rosa_multiflora	Rmu_sc0002570.1_g000003 Rmu_sc0013809.1_g000010 Rmu_sc0027728.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421010
rosa_rugosa	Rorug03G0029400 Rorug05G0307700
rosa_samantha	Rh3BG090800 Rh3CG090900 Rh3DG091700
rosa_wichuraiana	Rw3G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	1289
AccII	CGCG	1 cut(s)	488
AclI	AACGTT	1 cut(s)	1232
AclWI	GGATC	3 cut(s)	197, 312, 1295
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	62, 576
AfiI	CCNNNNNNNGG	2 cut(s)	1289, 1310
AflIII	ACRYGT	1 cut(s)	562
AgeI	ACCGGT	1 cut(s)	618
AgsI	TTSAA	7 cut(s)	440, 536, 1049, 1222, 1259, 1334, 1405
AhlI	ACTAGT	1 cut(s)	836
AjiI	CACGTC	2 cut(s)	565, 1413
AjnI	CCWGG	1 cut(s)	1282
AluBI	AGCT	8 cut(s)	32, 263, 283, 425, 674, 727, 1135, 1225
AluI	AGCT	8 cut(s)	32, 263, 283, 425, 674, 727, 1135, 1225
Alw21I	GWGCWC	1 cut(s)	1006
Alw26I	GTCTC	3 cut(s)	15, 400, 1419
AlwI	GGATC	3 cut(s)	197, 312, 1295
AoxI	GGCC	1 cut(s)	1277
ApeKI	GCWGC	4 cut(s)	280, 422, 425, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
AsiGI	ACCGGT	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	32, 559
AsuII	TTCGAA	1 cut(s)	941
AxyI	CCTNAGG	1 cut(s)	1350
Bbv12I	GWGCWC	1 cut(s)	1006
BbvI	GCAGC	4 cut(s)	292, 412, 434, 763
BccI	CCATC	4 cut(s)	1055, 1093, 1283, 1391
BciT130I	CCWGG	1 cut(s)	1284
BclI	TGATCA	2 cut(s)	682, 1167
BcoDI	GTCTC	3 cut(s)	15, 400, 1419
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	4 cut(s)	260, 348, 837, 990
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	4 cut(s)	281, 423, 426, 777
BlsI	GCNGC	4 cut(s)	282, 424, 427, 778
Bme1390I	CCNGG	1 cut(s)	1284
BmgBI	CACGTC	2 cut(s)	565, 1413
BmiI	GGNNCC	3 cut(s)	103, 290, 1017
BmrFI	CCNGG	1 cut(s)	1284
BmsI	GCATC	2 cut(s)	763, 934
Bpu10I	CCTNAGC	1 cut(s)	1367
Bpu14I	TTCGAA	1 cut(s)	941
Bsa29I	ATCGAT	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	570, 1283
BsaWI	WCCGGW	6 cut(s)	22, 285, 301, 554, 589, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	1289, 1310
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	1 cut(s)	1184
Bse21I	CCTNAGG	1 cut(s)	1350
Bse8I	GATNNNNATC	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	1284
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	570, 1283
BseGI	GGATG	5 cut(s)	151, 610, 928, 1219, 1294
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	2 cut(s)	1289, 1310
BseMII	CTCAG	5 cut(s)	1019, 1140, 1145, 1341, 1381
BseNI	ACTGG	1 cut(s)	1184
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	4 cut(s)	292, 412, 434, 763
Bsh1236I	CGCG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	1279
BshTI	ACCGGT	1 cut(s)	618
BshVI	ATCGAT	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	1006
BsiSI	CCGG	6 cut(s)	23, 286, 302, 555, 590, 619
BslFI	GGGAC	4 cut(s)	123, 1128, 1141, 1385
BslI	CCNNNNNNNGG	2 cut(s)	1289, 1310
BsmAI	GTCTC	3 cut(s)	15, 400, 1419
BsmBI	CGTCTC	2 cut(s)	15, 1419
BsmFI	GGGAC	4 cut(s)	123, 1128, 1141, 1385
BsnI	GGCC	1 cut(s)	1279
Bsp119I	TTCGAA	1 cut(s)	941
Bsp1286I	GDGCHC	1 cut(s)	1006
Bsp143I	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
BspANI	GGCC	1 cut(s)	1279
BspCNI	CTCAG	5 cut(s)	1018, 1141, 1144, 1342, 1380
BspDI	ATCGAT	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	488
BspHI	TCATGA	1 cut(s)	1081
BspLI	GGNNCC	3 cut(s)	103, 290, 1017
BspPI	GGATC	3 cut(s)	197, 312, 1295
BspT104I	TTCGAA	1 cut(s)	941
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	1184
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	2 cut(s)	570, 1283
BssMI	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	1284
Bst4CI	ACNGT	6 cut(s)	47, 106, 230, 366, 579, 959
Bst6I	CTCTTC	2 cut(s)	739, 1067
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	941
BstDEI	CTNAG	6 cut(s)	1005, 1131, 1149, 1226, 1350, 1367
BstF5I	GGATG	5 cut(s)	151, 610, 928, 1219, 1294
BstFNI	CGCG	1 cut(s)	488
BstKTI	GATC	9 cut(s)	180, 205, 307, 353, 402, 685, 1170, 1303, 1308
BstMAI	GTCTC	3 cut(s)	15, 400, 1419
BstMBI	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 419
BstNI	CCWGG	1 cut(s)	1284
BstSCI	CCNGG	1 cut(s)	1282
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	4 cut(s)	292, 412, 434, 763
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
Bsu15I	ATCGAT	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	1350
BsuRI	GGCC	1 cut(s)	1279
BsuTUI	ATCGAT	1 cut(s)	307
BtrI	CACGTC	2 cut(s)	565, 1413
BtsCI	GGATG	5 cut(s)	151, 610, 928, 1219, 1294
BtsIMutI	CAGTG	1 cut(s)	1191
CciI	TCATGA	1 cut(s)	1081
Cfr10I	RCCGGY	1 cut(s)	618
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	2 cut(s)	494, 1382
Csp6I	GTAC	2 cut(s)	61, 575
CspAI	ACCGGT	1 cut(s)	618
CviAII	CATG	5 cut(s)	383, 686, 782, 1082, 1171
CviQI	GTAC	2 cut(s)	61, 575
DdeI	CTNAG	6 cut(s)	1005, 1131, 1149, 1226, 1350, 1367
DpnI	GATC	9 cut(s)	179, 204, 306, 352, 401, 684, 1169, 1302, 1307
DpnII	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	739, 1067
EarI	CTCTTC	2 cut(s)	739, 1067
EciI	GGCGGA	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	1350
EcoRII	CCWGG	1 cut(s)	1282
Esp3I	CGTCTC	2 cut(s)	15, 1419
FaeI	CATG	5 cut(s)	386, 689, 785, 1085, 1174
FaqI	GGGAC	4 cut(s)	123, 1128, 1141, 1385
FatI	CATG	5 cut(s)	382, 685, 781, 1081, 1170
FauI	CCCGC	1 cut(s)	1046
FbaI	TGATCA	2 cut(s)	682, 1167
Fnu4HI	GCNGC	4 cut(s)	281, 423, 426, 777
FokI	GGATG	5 cut(s)	138, 617, 915, 1226, 1301
Fsp4HI	GCNGC	4 cut(s)	281, 423, 426, 777
FspBI	CTAG	4 cut(s)	260, 348, 837, 990
GluI	GCNGC	4 cut(s)	281, 423, 426, 777
HaeIII	GGCC	1 cut(s)	1279
HapII	CCGG	6 cut(s)	23, 286, 302, 555, 590, 619
HgaI	GACGC	2 cut(s)	494, 1382
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	386, 689, 785, 1085, 1174
HincII	GTYRAC	2 cut(s)	299, 757
HindII	GTYRAC	2 cut(s)	299, 757
HindIII	AAGCTT	2 cut(s)	30, 1223
HpaII	CCGG	6 cut(s)	23, 286, 302, 555, 590, 619
HphI	GGTGA	2 cut(s)	32, 559
Hpy166II	GTNNAC	5 cut(s)	63, 299, 560, 757, 1339
Hpy188I	TCNGA	8 cut(s)	124, 156, 175, 187, 343, 1213, 1253, 1305
Hpy188III	TCNNGA	6 cut(s)	200, 206, 348, 397, 461, 1082
Hpy8I	GTNNAC	5 cut(s)	63, 299, 560, 757, 1339
Hpy99I	CGWCG	5 cut(s)	10, 110, 323, 407, 488
HpyAV	CCTTC	7 cut(s)	302, 458, 743, 805, 879, 1029, 1043
HpyCH4III	ACNGT	6 cut(s)	47, 106, 230, 366, 579, 959
HpyCH4IV	ACGT	4 cut(s)	136, 564, 1232, 1412
HpyCH4V	TGCA	3 cut(s)	428, 925, 1410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 419
HpyF3I	CTNAG	6 cut(s)	1005, 1131, 1149, 1226, 1350, 1367
HpySE526I	ACGT	4 cut(s)	136, 564, 1232, 1412
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	386, 689, 785, 1085, 1174
Ksp22I	TGATCA	2 cut(s)	682, 1167
Kzo9I	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
LmnI	GCTCC	2 cut(s)	288, 557
Lsp1109I	GCAGC	4 cut(s)	292, 412, 434, 763
LweI	GCATC	2 cut(s)	763, 934
MaeI	CTAG	4 cut(s)	260, 348, 837, 990
MaeII	ACGT	4 cut(s)	136, 564, 1232, 1412
MaeIII	GTNAC	4 cut(s)	544, 565, 579, 688
MalI	GATC	9 cut(s)	179, 204, 306, 352, 401, 684, 1169, 1302, 1307
MboI	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
MboII	GAAGA	7 cut(s)	38, 428, 535, 745, 756, 836, 1084
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	1006
MluCI	AATT	2 cut(s)	157, 1254
MlyI	GAGTC	4 cut(s)	647, 1094, 1123, 1217
MmeI	TCCRAC	2 cut(s)	964, 1191
MnlI	CCTC	7 cut(s)	76, 79, 88, 97, 565, 1068, 1345
MseI	TTAA	5 cut(s)	368, 720, 1068, 1116, 1238
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	6 cut(s)	23, 286, 302, 555, 590, 619
MspR9I	CCNGG	1 cut(s)	1284
MvaI	CCWGG	1 cut(s)	1284
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	80, 419
NdeII	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
NlaIII	CATG	5 cut(s)	386, 689, 785, 1085, 1174
NlaIV	GGNNCC	3 cut(s)	103, 290, 1017
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	565, 688
NspV	TTCGAA	1 cut(s)	941
PagI	TCATGA	1 cut(s)	1081
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 480
PfeI	GAWTC	7 cut(s)	110, 182, 219, 309, 344, 712, 1078
PflMI	CCANNNNNTGG	1 cut(s)	1289
PinAI	ACCGGT	1 cut(s)	618
PkrI	GCNGC	4 cut(s)	282, 424, 427, 778
Ple19I	CGATCG	1 cut(s)	402
PleI	GAGTC	4 cut(s)	646, 1093, 1123, 1216
PpsI	GAGTC	4 cut(s)	646, 1093, 1123, 1216
Psp1406I	AACGTT	1 cut(s)	1232
Psp6I	CCWGG	1 cut(s)	1282
PspGI	CCWGG	1 cut(s)	1282
PspN4I	GGNNCC	3 cut(s)	103, 290, 1017
PsuI	RGATCY	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	62, 576
RsaNI	GTAC	2 cut(s)	61, 575
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	368, 720, 1068, 1116, 1238
SatI	GCNGC	4 cut(s)	281, 423, 426, 777
Sau3AI	GATC	9 cut(s)	177, 202, 304, 350, 399, 682, 1167, 1300, 1305
SchI	GAGTC	4 cut(s)	647, 1094, 1123, 1217
ScrFI	CCNGG	1 cut(s)	1284
SduI	GDGCHC	1 cut(s)	1006
SfaNI	GCATC	2 cut(s)	763, 934
SfuI	TTCGAA	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	2 cut(s)	157, 1254
SspMI	CTAG	4 cut(s)	260, 348, 837, 990
StyD4I	CCNGG	1 cut(s)	1282
TaaI	ACNGT	6 cut(s)	47, 106, 230, 366, 579, 959
TaiI	ACGT	4 cut(s)	139, 567, 1235, 1415
TasI	AATT	2 cut(s)	157, 1254
TfiI	GAWTC	7 cut(s)	110, 182, 219, 309, 344, 712, 1078
Tru1I	TTAA	5 cut(s)	368, 720, 1068, 1116, 1238
Tru9I	TTAA	5 cut(s)	368, 720, 1068, 1116, 1238
TscAI	CASTG	1 cut(s)	1191
TseFI	GTSAC	2 cut(s)	565, 688
TseI	GCWGC	4 cut(s)	280, 422, 425, 776
Tsp45I	GTSAC	2 cut(s)	565, 688
TspDTI	ATGAA	4 cut(s)	405, 491, 824, 836
TspGWI	ACGGA	2 cut(s)	114, 237
TspRI	CASTG	1 cut(s)	1191
Van91I	CCANNNNNTGG	1 cut(s)	1289
XbaI	TCTAGA	1 cut(s)	347
XspI	CTAG	4 cut(s)	260, 348, 837, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.