Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027728.1

Orthogroup ID

OG0005987

Physical Location & Seq

Genomic Coordinates Reverse (-)

528 .. 1253

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgccgtgtgtggttatacctgttaaggagttggttaagatttgtagggaggagggagttgatcaggttttcgtcgatgcggcacacagcattgggtgcactgaggttgatatgaaggacattggggctgattattatactagtaatttgcacaagtggttcttttgcccgccgtcgattgcgtttttgtattgtaggaagtcgcccaagggtgtggaattgcaccacccggtggtttcccatgagtatgggaatggattggctattgaaagtgcttggattgggaccagggattacagccctcagttggttgttccggcggttttggactttgtcaataggtttgaaggcggaattgaggggatcaggaagagaaatcatgagactgttgttgagatggggcagatgttggccaaggcttggggaacacatcttgggtgtcctccggaaatgtgtgctagcatggtcatgattggtttacctgcttgtttggggatttcaagtgagaaggatactctaaagttgaggacgcatttgagggagaagtttgctgttgaagtccctatatatttccgaccacctaagaatggggaggttgagtcgttaactgggtattgccgaatttctcatcaagtctacaacaaagttgatgattattacaagtttagagacgcaattaaccaacttgtttctgatgggtttacttgtgccctactttctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

241

Amino Acids

27.02

Weight (kDa)

6.14

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26600 AT5G26600
fragaria_vesca	FvH4_6g08451 FvH4_6g08451 FvH4_6g08451 FvH4_6g08451
malus_domestica	MD04G1186700.v1.1 MD12G1200100.v1.1
prunus_persica	Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0320191 RchiOBHm_Chr2g0094871 RchiOBHm_Chr3g0458521 RchiOBHm_Chr5g0036671
rosa_laevigata	RLG00000025151
rosa_multiflora	Rmu_sc0002570.1_g000003 Rmu_sc0013809.1_g000010 Rmu_sc0027728.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421010
rosa_rugosa	Rorug03G0029400 Rorug05G0307700
rosa_samantha	Rh3BG090800 Rh3CG090900 Rh3DG091700
rosa_wichuraiana	Rw3G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	2 cut(s)	232, 420
AccI	GTMKAC	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	4 cut(s)	80, 170, 320, 351
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	232
AfiI	CCNNNNNNNGG	4 cut(s)	232, 307, 420, 587
AgsI	TTSAA	4 cut(s)	269, 347, 501, 557
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	377, 663
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	1 cut(s)	411
ApaLI	GTGCAC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	285
BaeGI	GKGCMC	2 cut(s)	101, 712
BalI	TGGCCA	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	2 cut(s)	391, 689
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	377, 663
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	2 cut(s)	141, 459
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	230, 289
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	230, 289
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	67
BmtI	GCTAGC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	207, 288, 414
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 307, 420, 587
Bse1I	ACTGG	1 cut(s)	613
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	207, 288, 414
BseLI	CCNNNNNNNGG	4 cut(s)	232, 307, 420, 587
BseMII	CTCAG	2 cut(s)	93, 317
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	101, 712
BshFI	GGCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	230, 317, 446
BslFI	GGGAC	2 cut(s)	298, 545
BslI	CCNNNNNNNGG	4 cut(s)	232, 307, 420, 587
BsmAI	GTCTC	2 cut(s)	377, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	2 cut(s)	298, 545
BsnI	GGCC	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	101, 712
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	61, 363
BspACI	CCGC	4 cut(s)	80, 170, 320, 351
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	94, 316
BspEI	TCCGGA	1 cut(s)	445
BspHI	TCATGA	2 cut(s)	379, 468
BspLI	GGNNCC	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	3 cut(s)	207, 288, 414
BssMI	GATC	2 cut(s)	61, 363
BssT1I	CCWWGG	2 cut(s)	207, 414
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	170, 460
BstDEI	CTNAG	3 cut(s)	102, 303, 582
BstKTI	GATC	2 cut(s)	64, 366
BstMAI	GTCTC	2 cut(s)	377, 663
BstMBI	GATC	2 cut(s)	61, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	228, 287
BstSLI	GKGCMC	2 cut(s)	101, 712
BstXI	CCANNNNNNTGG	2 cut(s)	214, 248
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	170, 460
CciI	TCATGA	2 cut(s)	379, 468
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	2 cut(s)	538, 680
CviAII	CATG	4 cut(s)	242, 380, 463, 469
CviJI	RGCY	5 cut(s)	128, 263, 300, 413, 419
CviKI_1	RGCY	5 cut(s)	128, 263, 300, 413, 419
DdeI	CTNAG	3 cut(s)	102, 303, 582
DpnI	GATC	2 cut(s)	63, 365
DpnII	GATC	2 cut(s)	61, 363
DraIII	CACNNNGTG	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	207, 414
Eco47I	GGWCC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	207, 414
ErhI	CCWWGG	2 cut(s)	207, 414
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	4 cut(s)	245, 383, 466, 472
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	2 cut(s)	298, 545
FatI	CATG	4 cut(s)	241, 379, 462, 468
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	141, 459
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	3 cut(s)	230, 317, 446
HgaI	GACGC	2 cut(s)	538, 680
Hin1II	CATG	4 cut(s)	245, 383, 466, 472
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	1 cut(s)	599
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	3 cut(s)	230, 317, 446
Hpy166II	GTNNAC	5 cut(s)	99, 479, 606, 637, 702
Hpy188I	TCNGA	2 cut(s)	575, 694
Hpy188III	TCNNGA	4 cut(s)	367, 380, 446, 469
Hpy8I	GTNNAC	5 cut(s)	99, 479, 606, 637, 702
Hpy99I	CGWCG	2 cut(s)	77, 178
HpyAV	CCTTC	3 cut(s)	109, 341, 502
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	99, 151, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	102, 303, 582
Hsp92II	CATG	4 cut(s)	245, 383, 466, 472
Kpn2I	TCCGGA	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	61, 363
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	141, 459
MalI	GATC	2 cut(s)	63, 365
MboI	GATC	2 cut(s)	61, 363
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	101, 712
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	6 cut(s)	145, 218, 354, 621, 675, 721
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	9 cut(s)	43, 46, 97, 312, 352, 453, 519, 531, 586
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	4 cut(s)	24, 36, 605, 678
MslI	CAYNNNNRTG	2 cut(s)	246, 467
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	3 cut(s)	230, 317, 446
MspR9I	CCNGG	2 cut(s)	230, 289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	61, 363
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	245, 383, 466, 472
NlaIV	GGNNCC	1 cut(s)	286
PagI	TCATGA	2 cut(s)	379, 468
PflFI	GACNNNGTC	1 cut(s)	332
PflMI	CCANNNNNTGG	2 cut(s)	232, 420
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	332
RseI	CAYNNNNRTG	2 cut(s)	246, 467
SaqAI	TTAA	4 cut(s)	24, 36, 605, 678
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	61, 363
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	230, 289
SduI	GDGCHC	2 cut(s)	101, 712
SetI	ASST	7 cut(s)	22, 69, 108, 344, 484, 583, 597
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	246, 467
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	6 cut(s)	145, 218, 354, 621, 675, 721
SsiI	CCGC	4 cut(s)	80, 170, 320, 351
SspMI	CTAG	2 cut(s)	141, 459
StyD4I	CCNGG	2 cut(s)	228, 287
StyI	CCWWGG	2 cut(s)	207, 414
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	2 cut(s)	75, 176
TasI	AATT	6 cut(s)	145, 218, 354, 621, 675, 721
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	4 cut(s)	24, 36, 605, 678
Tru9I	TTAA	4 cut(s)	24, 36, 605, 678
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	332
Van91I	CCANNNNNTGG	2 cut(s)	232, 420
VneI	GTGCAC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	2 cut(s)	141, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.