Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013809.1

Orthogroup ID

OG0005987

Physical Location & Seq

Genomic Coordinates Reverse (-)

39680 .. 46015

Gene Structure 6336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013809.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

atgccgtgtgtggttatacctgttaaggagctggttaagatttgtagggaggagggagttgatcaggttttcgtagatgcggcacacagcattgggtgcactgaggttgatatgaaggacattggggctgattattatactagtaatttgcacaagtggttcttttgcccgccgtcgattgcgtttttgtattgtaggaagtcgcccaagggtgtggaattgcaccacccggtggtttcccatgagtatgggaatggattggctattgaaagtttgaaggcggaattgaggggatcagccaagggtgtggaattgcaccacccggtggtttcccatgagtatgggaatggattggctattgaaagtgcttggattgggaccagggattacagccctcagttggttgttccggcggttttggactttgtcaataggtttgaaggcggaattgaggggatcaagaagagaaatcatgagactgttgttgagatggggcagatgttggccaaggcttggggaacacatcttgggtgtcctccggaaatgtgtgctagcatggtcatgattggtttacctgcttgtttggggatttcaagtgagaaggatactctaaagttgaggacgcatttgagggagaagtttgctgttgaagtccctatatatttccgaccacctaagaatggggaggttgagtcgttaactggccttggttcaccagattcgccgcctcacttcgccggcttcgtagccttgcttagccggattcgcagcctcggttcgcctgttgctttgcagcctcggttcgccggattcgcagcctcacttcgccggcttcgcagccttgcttcgcgggatttgcagcctcccttcgccggttgcttcgcaggattcgcagcctcggttcgcaggttgctttgcagccttggttcgccggattcgcagcctcacttccccggcttcgcagcctcgcttcgccgcctcgatccgccagctgcttcgtcccttacttttgtcggagccatagatcgatttagggaggaagtggctcgggccttccgggtagggaagaggactcaaacccccaaatttccagatctctacttcttcttctcaatccggttgttgtccctgtgtgtcgctttcttcagcgactcttatccctttccttctgccctgacttgtatatatgctccttggagctcgtttcaaaacggggtctgcccgttagtgcaccaggtgatgttacaagggtctgaacatcctatggatgcctgtccctttgatccctttgtggatctcacctccctctcttttcaactggtttttctggttgatctgttggcagaagatgttctccgtttcggagatggtttgagatttgggtttcttctctttgaatctggtttgctattggttgggtgttcgatcggaactatgatgggtctgcctggtttaggccctattgtctttctttgttggtgcgttctgagatatctcgatcttcttggtagtgtagcttggtgttctctccatgggcagcgatgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

516

Amino Acids

56.61

Weight (kDa)

6.95

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26600 AT5G26600
fragaria_vesca	FvH4_6g08451 FvH4_6g08451 FvH4_6g08451 FvH4_6g08451
malus_domestica	MD04G1186700.v1.1 MD12G1200100.v1.1
prunus_persica	Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0320191 RchiOBHm_Chr2g0094871 RchiOBHm_Chr3g0458521 RchiOBHm_Chr5g0036671
rosa_laevigata	RLG00000025151
rosa_multiflora	Rmu_sc0002570.1_g000003 Rmu_sc0013809.1_g000010 Rmu_sc0027728.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421010
rosa_rugosa	Rorug03G0029400 Rorug05G0307700
rosa_samantha	Rh3BG090800 Rh3CG090900 Rh3DG091700
rosa_wichuraiana	Rw3G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	583, 897
AccB7I	CCANNNNNTGG	3 cut(s)	232, 325, 513
AccII	CGCG	1 cut(s)	850
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	9 cut(s)	80, 170, 281, 413, 444, 725, 850, 976, 986
AclWI	GGATC	5 cut(s)	301, 464, 977, 1277, 1302
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	1085
AcuI	CTGAAG	1 cut(s)	1129
AdeI	CACNNNGTG	3 cut(s)	232, 325, 1237
AfiI	CCNNNNNNNGG	7 cut(s)	232, 325, 400, 513, 680, 872, 1454
AgsI	TTSAA	9 cut(s)	269, 277, 362, 440, 594, 650, 1208, 1316, 1397
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	3 cut(s)	380, 1233, 1447
AluBI	AGCT	4 cut(s)	31, 992, 1200, 1517
AluI	AGCT	4 cut(s)	31, 992, 1200, 1517
Alw21I	GWGCWC	3 cut(s)	101, 1202, 1233
Alw26I	GTCTC	1 cut(s)	470
Alw44I	GTGCAC	2 cut(s)	97, 1229
AlwI	GGATC	5 cut(s)	301, 464, 977, 1277, 1302
Ama87I	CYCGRG	1 cut(s)	1047
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	4 cut(s)	504, 703, 1050, 1456
ApaLI	GTGCAC	2 cut(s)	97, 1229
ApoI	RAATTY	1 cut(s)	1085
Asp700I	GAANNNNTTC	1 cut(s)	1350
AspS9I	GGNCC	3 cut(s)	378, 1050, 1457
AsuC2I	CCSGG	4 cut(s)	230, 323, 954, 1058
AsuHPI	GGTGA	3 cut(s)	705, 1249, 1291
AsuNHI	GCTAGC	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	1047
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	2 cut(s)	101, 1233
BalI	TGGCCA	1 cut(s)	506
BanII	GRGCYC	1 cut(s)	1202
Bbv12I	GWGCWC	3 cut(s)	101, 1202, 1233
BccI	CCATC	3 cut(s)	484, 1361, 1432
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	3 cut(s)	382, 1235, 1449
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	4 cut(s)	230, 323, 954, 1058
BcoDI	GTCTC	1 cut(s)	470
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	2 cut(s)	141, 552
BfuAI	ACCTGC	2 cut(s)	583, 897
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	1093
BlpI	GCTNAGC	1 cut(s)	755
Bme1390I	CCNGG	7 cut(s)	230, 323, 382, 954, 1058, 1235, 1449
Bme18I	GGWCC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	1047
BmgT120I	GGNCC	3 cut(s)	378, 1050, 1457
BmiI	GGNNCC	2 cut(s)	379, 1018
BmrFI	CCNGG	7 cut(s)	230, 323, 382, 954, 1058, 1235, 1449
BmsI	GCATC	3 cut(s)	67, 1258, 1532
BmtI	GCTAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	755
BpuMI	CCSGG	4 cut(s)	230, 323, 954, 1058
Bsa29I	ATCGAT	1 cut(s)	1027
BsaWI	WCCGGW	2 cut(s)	538, 1116
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	7 cut(s)	232, 325, 400, 513, 680, 872, 1454
Bse118I	RCCGGY	3 cut(s)	737, 828, 872
Bse1I	ACTGG	2 cut(s)	706, 1323
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	3 cut(s)	382, 1235, 1449
BseCI	ATCGAT	1 cut(s)	1027
BseGI	GGATG	2 cut(s)	1258, 1273
BseLI	CCNNNNNNNGG	7 cut(s)	232, 325, 400, 513, 680, 872, 1454
BseMII	CTCAG	3 cut(s)	93, 410, 1478
BseNI	ACTGG	2 cut(s)	706, 1323
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	101, 1233
Bsh1236I	CGCG	1 cut(s)	850
Bsh1285I	CGRYCG	1 cut(s)	1428
BshFI	GGCC	4 cut(s)	506, 705, 1052, 1458
BshVI	ATCGAT	1 cut(s)	1027
BsiEI	CGRYCG	1 cut(s)	1428
BsiHKAI	GWGCWC	3 cut(s)	101, 1202, 1233
BsiHKCI	CYCGRG	1 cut(s)	1047
BslFI	GGGAC	5 cut(s)	391, 638, 985, 1111, 1260
BslI	CCNNNNNNNGG	7 cut(s)	232, 325, 400, 513, 680, 872, 1454
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	5 cut(s)	391, 638, 985, 1111, 1260
BsnI	GGCC	4 cut(s)	506, 705, 1052, 1458
BsoBI	CYCGRG	1 cut(s)	1047
Bsp1286I	GDGCHC	3 cut(s)	101, 1202, 1233
Bsp13I	TCCGGA	1 cut(s)	538
Bsp1720I	GCTNAGC	1 cut(s)	755
Bsp19I	CCATGG	1 cut(s)	1531
BspACI	CCGC	9 cut(s)	80, 170, 281, 413, 444, 725, 850, 976, 986
BspANI	GGCC	4 cut(s)	506, 705, 1052, 1458
BspCNI	CTCAG	3 cut(s)	94, 409, 1479
BspDI	ATCGAT	1 cut(s)	1027
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	850
BspHI	TCATGA	2 cut(s)	472, 561
BspLI	GGNNCC	2 cut(s)	379, 1018
BspMI	ACCTGC	2 cut(s)	583, 897
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	5 cut(s)	301, 464, 977, 1277, 1302
BsrFI	RCCGGY	3 cut(s)	737, 828, 872
BsrI	ACTGG	2 cut(s)	706, 1323
BssAI	RCCGGY	3 cut(s)	737, 828, 872
BssT1I	CCWWGG	7 cut(s)	207, 300, 507, 706, 922, 1193, 1531
Bst2UI	CCWGG	3 cut(s)	382, 1235, 1449
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	2 cut(s)	458, 1061
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	170, 553, 739, 830, 990
BstDEI	CTNAG	5 cut(s)	102, 396, 675, 755, 1487
BstDSI	CCRYGG	1 cut(s)	1531
BstENI	CCTNNNNNAGG	1 cut(s)	1452
BstF5I	GGATG	2 cut(s)	1258, 1273
BstFNI	CGCG	1 cut(s)	850
BstMAI	GTCTC	1 cut(s)	470
BstMCI	CGRYCG	1 cut(s)	1428
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 765, 812, 834, 856, 890, 937
BstNI	CCWGG	3 cut(s)	382, 1235, 1449
BstSCI	CCNGG	7 cut(s)	228, 321, 380, 952, 1056, 1233, 1447
BstSLI	GKGCMC	2 cut(s)	101, 1233
BstUI	CGCG	1 cut(s)	850
BstX2I	RGATCY	2 cut(s)	1093, 1294
BstXI	CCANNNNNNTGG	4 cut(s)	214, 248, 307, 341
BstYI	RGATCY	2 cut(s)	1093, 1294
Bsu15I	ATCGAT	1 cut(s)	1027
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	4 cut(s)	506, 705, 1052, 1458
BsuTUI	ATCGAT	1 cut(s)	1027
BtgI	CCRYGG	1 cut(s)	1531
BtsCI	GGATG	2 cut(s)	1258, 1273
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	2 cut(s)	583, 897
Cac8I	GCNNGC	5 cut(s)	170, 553, 739, 830, 990
CciI	TCATGA	2 cut(s)	472, 561
Cfr10I	RCCGGY	3 cut(s)	737, 828, 872
Cfr13I	GGNCC	3 cut(s)	378, 1050, 1457
ClaI	ATCGAT	1 cut(s)	1027
CseI	GACGC	1 cut(s)	631
CsiI	ACCWGGT	1 cut(s)	1233
CviAII	CATG	6 cut(s)	242, 335, 473, 556, 562, 1532
DdeI	CTNAG	5 cut(s)	102, 396, 675, 755, 1487
DraIII	CACNNNGTG	3 cut(s)	232, 325, 1237
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	458, 1061
EarI	CTCTTC	2 cut(s)	458, 1061
EciI	GGCGGA	3 cut(s)	296, 459, 975
Ecl136II	GAGCTC	1 cut(s)	1200
Eco130I	CCWWGG	7 cut(s)	207, 300, 507, 706, 922, 1193, 1531
Eco24I	GRGCYC	1 cut(s)	1202
Eco32I	GATATC	1 cut(s)	1493
Eco47I	GGWCC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	1200
Eco57I	CTGAAG	1 cut(s)	1129
Eco88I	CYCGRG	1 cut(s)	1047
EcoICRI	GAGCTC	1 cut(s)	1200
EcoNI	CCTNNNNNAGG	1 cut(s)	1452
EcoO109I	RGGNCCY	1 cut(s)	1457
EcoRII	CCWGG	3 cut(s)	380, 1233, 1447
EcoRV	GATATC	1 cut(s)	1493
EcoT14I	CCWWGG	7 cut(s)	207, 300, 507, 706, 922, 1193, 1531
EcoT38I	GRGCYC	1 cut(s)	1202
ErhI	CCWWGG	7 cut(s)	207, 300, 507, 706, 922, 1193, 1531
FaeI	CATG	6 cut(s)	245, 338, 476, 559, 565, 1535
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	5 cut(s)	391, 638, 985, 1111, 1260
FatI	CATG	6 cut(s)	241, 334, 472, 555, 561, 1531
FauI	CCCGC	2 cut(s)	177, 843
FbaI	TGATCA	1 cut(s)	61
FokI	GGATG	2 cut(s)	1245, 1280
FriOI	GRGCYC	1 cut(s)	1202
FspBI	CTAG	2 cut(s)	141, 552
HaeIII	GGCC	4 cut(s)	506, 705, 1052, 1458
HgaI	GACGC	1 cut(s)	631
Hin1II	CATG	6 cut(s)	245, 338, 476, 559, 565, 1535
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HinfI	GANTC	9 cut(s)	692, 719, 763, 810, 888, 935, 1072, 1151, 1397
HpaI	GTTAAC	1 cut(s)	699
HphI	GGTGA	3 cut(s)	705, 1249, 1291
Hpy166II	GTNNAC	5 cut(s)	99, 572, 699, 713, 1231
Hpy188I	TCNGA	6 cut(s)	668, 1016, 1255, 1364, 1430, 1488
Hpy188III	TCNNGA	6 cut(s)	460, 473, 539, 562, 1091, 1496
Hpy8I	GTNNAC	5 cut(s)	99, 572, 699, 713, 1231
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	7 cut(s)	109, 271, 434, 595, 877, 1063, 1176
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	9 cut(s)	99, 151, 223, 316, 793, 859, 918, 1231, 1545
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 765, 812, 834, 856, 890, 937
HpyF3I	CTNAG	5 cut(s)	102, 396, 675, 755, 1487
Hsp92II	CATG	6 cut(s)	245, 338, 476, 559, 565, 1535
Kpn2I	TCCGGA	1 cut(s)	538
KroI	GCCGGC	2 cut(s)	737, 828
KroNI	GCCGGC	2 cut(s)	739, 830
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	699
LmnI	GCTCC	4 cut(s)	28, 1016, 1195, 1197
LweI	GCATC	3 cut(s)	67, 1258, 1532
MabI	ACCWGGT	1 cut(s)	1233
MaeI	CTAG	2 cut(s)	141, 552
MaeIII	GTNAC	1 cut(s)	1242
MboII	GAAGA	8 cut(s)	475, 1078, 1096, 1099, 1135, 1358, 1379, 1493
MflI	RGATCY	2 cut(s)	1093, 1294
MhlI	GDGCHC	3 cut(s)	101, 1202, 1233
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	6 cut(s)	145, 218, 284, 311, 447, 1085
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	3 cut(s)	701, 1066, 1145
MmeI	TCCRAC	2 cut(s)	691, 994
Mox20I	TGGCCA	1 cut(s)	506
MroI	TCCGGA	1 cut(s)	538
MroNI	GCCGGC	2 cut(s)	737, 828
MroXI	GAANNNNTTC	1 cut(s)	1350
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	3 cut(s)	24, 36, 698
MslI	CAYNNNNRTG	3 cut(s)	246, 339, 560
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	992
MspR9I	CCNGG	7 cut(s)	230, 323, 382, 954, 1058, 1235, 1449
MvaI	CCWGG	3 cut(s)	382, 1235, 1449
MvnI	CGCG	1 cut(s)	850
MwoI	GCNNNNNNNGC	7 cut(s)	96, 765, 812, 834, 856, 890, 937
NaeI	GCCGGC	2 cut(s)	739, 830
NciI	CCSGG	4 cut(s)	230, 323, 954, 1058
NcoI	CCATGG	1 cut(s)	1531
NgoMIV	GCCGGC	2 cut(s)	737, 828
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	6 cut(s)	245, 338, 476, 559, 565, 1535
NlaIV	GGNNCC	2 cut(s)	379, 1018
PagI	TCATGA	2 cut(s)	472, 561
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PdiI	GCCGGC	2 cut(s)	739, 830
PdmI	GAANNNNTTC	1 cut(s)	1350
PfeI	GAWTC	6 cut(s)	719, 763, 810, 888, 935, 1397
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	3 cut(s)	232, 325, 513
Ple19I	CGATCG	1 cut(s)	1428
PleI	GAGTC	3 cut(s)	700, 1066, 1145
PpsI	GAGTC	3 cut(s)	700, 1066, 1145
Psp124BI	GAGCTC	1 cut(s)	1202
Psp6I	CCWGG	3 cut(s)	380, 1233, 1447
PspGI	CCWGG	3 cut(s)	380, 1233, 1447
PspN4I	GGNNCC	2 cut(s)	379, 1018
PspPI	GGNCC	3 cut(s)	378, 1050, 1457
PsuI	RGATCY	2 cut(s)	1093, 1294
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	1428
PvuII	CAGCTG	1 cut(s)	992
RseI	CAYNNNNRTG	3 cut(s)	246, 339, 560
SacI	GAGCTC	1 cut(s)	1202
SaqAI	TTAA	3 cut(s)	24, 36, 698
Sau96I	GGNCC	3 cut(s)	378, 1050, 1457
SchI	GAGTC	3 cut(s)	701, 1066, 1145
ScrFI	CCNGG	7 cut(s)	230, 323, 382, 954, 1058, 1235, 1449
SduI	GDGCHC	3 cut(s)	101, 1202, 1233
SexAI	ACCWGGT	1 cut(s)	1233
SfaNI	GCATC	3 cut(s)	67, 1258, 1532
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	3 cut(s)	246, 339, 560
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	6 cut(s)	145, 218, 284, 311, 447, 1085
SsiI	CCGC	9 cut(s)	80, 170, 281, 413, 444, 725, 850, 976, 986
SspMI	CTAG	2 cut(s)	141, 552
SstI	GAGCTC	1 cut(s)	1202
StyD4I	CCNGG	7 cut(s)	228, 321, 380, 952, 1056, 1233, 1447
StyI	CCWWGG	7 cut(s)	207, 300, 507, 706, 922, 1193, 1531
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	5 cut(s)	176, 981, 1027, 1424, 1497
TasI	AATT	6 cut(s)	145, 218, 284, 311, 447, 1085
TauI	GCSGC	3 cut(s)	83, 727, 978
TfiI	GAWTC	6 cut(s)	719, 763, 810, 888, 935, 1397
Tru1I	TTAA	3 cut(s)	24, 36, 698
Tru9I	TTAA	3 cut(s)	24, 36, 698
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	1346
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	3 cut(s)	232, 325, 513
VneI	GTGCAC	2 cut(s)	97, 1229
VpaK11BI	GGWCC	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	1452
XapI	RAATTY	1 cut(s)	1085
XmnI	GAANNNNTTC	1 cut(s)	1350
XspI	CTAG	2 cut(s)	141, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.