Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002570.1

Orthogroup ID

OG0005987

Physical Location & Seq

Genomic Coordinates Forward (+)

21365 .. 22315

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002570.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggcctcctcccccgaccacaaccacaccctgaacggcgattccaacacccacgcctccaaaaagcccaaactctccttcatcaccccctccgaaatcgccgccgaattctcccaccaccaccccaccgtcgcccgaatcaacaacggcagcttcgggtccttccccgactccgtcctccaggcccagcgccgctggcagctcaagtacctctcccagcccaatcacttctacttcaaccacctccaagccggcatcctccactcccgcaccctcatcaaggacctcatcaacgccgaccacgtcgacgaggtctccatcgtcgacaacgccaccaccgccgccgccatcgtcctccagcaggctgcctggggcttctccgagagcaagttcgagcagggcgacgccgcctacatcactcacgccggcgggcacgtcattgaggtaccctttccgtttcctttgaattccaacgatgagattgtaaccgagtttaggaaggctttggagaaggggaaggctaatggtaggagggttaggttagctgtgattgatcatattacttcaatgtcgtgtgtggttatacctgttaaggagttggttaagatttgtagggaggagggagttgatcaggttttcgtcgatgcggcacacagcattgggtgcactgaggttgatatgaaggacattggggctgattattatactagtaatttgcacaagtggttcttttgcccgccgtcgattgcgtttttgtattgtaggaagtcgcccaagggtgtggaattgcaccacccggtggtttcccatgagtatgggaatggattggctattgaaagtgcttggattgggactagggattacagccctcagttgtatgtaagtgtcatttctatattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

300

Amino Acids

33.32

Weight (kDa)

6.3

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26600 AT5G26600
fragaria_vesca	FvH4_6g08451 FvH4_6g08451 FvH4_6g08451 FvH4_6g08451
malus_domestica	MD04G1186700.v1.1 MD12G1200100.v1.1
prunus_persica	Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0320191 RchiOBHm_Chr2g0094871 RchiOBHm_Chr3g0458521 RchiOBHm_Chr5g0036671
rosa_laevigata	RLG00000025151
rosa_multiflora	Rmu_sc0002570.1_g000003 Rmu_sc0013809.1_g000010 Rmu_sc0027728.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421010
rosa_rugosa	Rorug03G0029400 Rorug05G0307700
rosa_samantha	Rh3BG090800 Rh3CG090900 Rh3DG091700
rosa_wichuraiana	Rw3G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccI	GTMKAC	2 cut(s)	306, 324
AcsI	RAATTY	2 cut(s)	107, 466
AcyI	GRCGYC	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	799
AfaI	GTAC	2 cut(s)	209, 447
AfiI	CCNNNNNNNGG	4 cut(s)	280, 361, 495, 799
AgsI	TTSAA	4 cut(s)	238, 466, 567, 836
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	2 cut(s)	304, 436
AjnI	CCWGG	2 cut(s)	180, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	153, 202, 545
AluI	AGCT	3 cut(s)	153, 202, 545
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	664
AoxI	GGCC	2 cut(s)	3, 183
ApaLI	GTGCAC	1 cut(s)	664
ApeKI	GCWGC	3 cut(s)	150, 199, 365
ApoI	RAATTY	2 cut(s)	107, 466
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	159, 184, 283
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	159, 283
BaeGI	GKGCMC	2 cut(s)	435, 668
BanI	GGYRCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	162, 211, 352
BccI	CCATC	2 cut(s)	326, 356
BceAI	ACGGC	3 cut(s)	52, 163, 724
BciT130I	CCWGG	2 cut(s)	182, 370
BclI	TGATCA	2 cut(s)	553, 628
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	2 cut(s)	708, 855
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	9 cut(s)	102, 151, 193, 200, 342, 345, 366, 408, 648
BlsI	GCNGC	9 cut(s)	103, 152, 194, 201, 343, 346, 367, 409, 649
Bme1390I	CCNGG	3 cut(s)	182, 370, 797
Bme18I	GGWCC	2 cut(s)	159, 283
BmgBI	CACGTC	2 cut(s)	304, 436
BmgT120I	GGNCC	3 cut(s)	159, 184, 283
BmiI	GGNNCC	2 cut(s)	160, 447
BmrFI	CCNGG	3 cut(s)	182, 370, 797
BmsI	GCATC	2 cut(s)	264, 634
BpmI	CTGGAG	2 cut(s)	164, 341
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	369, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 361, 495, 799
Bse118I	RCCGGY	2 cut(s)	251, 425
BseBI	CCWGG	2 cut(s)	182, 370
BseDI	CCNNGG	2 cut(s)	369, 774
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	4 cut(s)	280, 361, 495, 799
BseMII	CTCAG	2 cut(s)	660, 884
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	2 cut(s)	435, 668
BseXI	GCAGC	3 cut(s)	162, 211, 352
BseYI	CCCAGC	2 cut(s)	186, 216
BshFI	GGCC	2 cut(s)	5, 185
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	3 cut(s)	252, 426, 797
BslFI	GGGAC	1 cut(s)	865
BslI	CCNNNNNNNGG	4 cut(s)	280, 361, 495, 799
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	865
BsnI	GGCC	2 cut(s)	5, 185
Bso31I	GGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	435, 668
Bsp143I	GATC	2 cut(s)	553, 628
BspANI	GGCC	2 cut(s)	5, 185
BspCNI	CTCAG	2 cut(s)	661, 883
BspLI	GGNNCC	2 cut(s)	160, 447
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	251, 425
BssAI	RCCGGY	2 cut(s)	251, 425
BssECI	CCNNGG	2 cut(s)	369, 774
BssMI	GATC	2 cut(s)	553, 628
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	2 cut(s)	182, 370
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	663
BstC8I	GCNNGC	6 cut(s)	197, 253, 363, 427, 431, 737
BstDEI	CTNAG	2 cut(s)	669, 870
BstENI	CCTNNNNNAGG	2 cut(s)	278, 359
BstF5I	GGATG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	556, 631
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	553, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 338, 663
BstNI	CCWGG	2 cut(s)	182, 370
BstSCI	CCNGG	3 cut(s)	180, 368, 795
BstSLI	GKGCMC	2 cut(s)	435, 668
BstV1I	GCAGC	3 cut(s)	162, 211, 352
BstXI	CCANNNNNNTGG	2 cut(s)	781, 815
BsuRI	GGCC	2 cut(s)	5, 185
BtrI	CACGTC	2 cut(s)	304, 436
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	6 cut(s)	197, 253, 363, 427, 431, 737
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	2 cut(s)	251, 425
Cfr13I	GGNCC	3 cut(s)	159, 184, 283
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	208, 446
CviAII	CATG	1 cut(s)	809
CviQI	GTAC	2 cut(s)	208, 446
DdeI	CTNAG	2 cut(s)	669, 870
DpnI	GATC	2 cut(s)	555, 630
DpnII	GATC	2 cut(s)	553, 628
DraIII	CACNNNGTG	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	774
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	159, 283
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 359
EcoO109I	RGGNCCY	2 cut(s)	159, 283
EcoRI	GAATTC	2 cut(s)	107, 466
EcoRII	CCWGG	2 cut(s)	180, 368
EcoT14I	CCWWGG	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	1 cut(s)	812
FaiI	YATR	8 cut(s)	558, 584, 680, 705, 810, 816, 879, 896
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	865
FatI	CATG	1 cut(s)	808
FauI	CCCGC	3 cut(s)	275, 422, 744
FbaI	TGATCA	2 cut(s)	553, 628
FblI	GTMKAC	2 cut(s)	306, 324
Fnu4HI	GCNGC	9 cut(s)	102, 151, 193, 200, 342, 345, 366, 408, 648
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	9 cut(s)	102, 151, 193, 200, 342, 345, 366, 408, 648
FspBI	CTAG	2 cut(s)	708, 855
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	9 cut(s)	102, 151, 193, 200, 342, 345, 366, 408, 648
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	2 cut(s)	164, 341
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	5, 185
HapII	CCGG	3 cut(s)	252, 426, 797
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	812
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	307, 325
HindII	GTYRAC	2 cut(s)	307, 325
HinfI	GANTC	3 cut(s)	41, 138, 170
HpaII	CCGG	3 cut(s)	252, 426, 797
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	307, 325, 666
Hpy188I	TCNGA	2 cut(s)	94, 382
Hpy8I	GTNNAC	3 cut(s)	307, 325, 666
Hpy99I	CGWCG	7 cut(s)	134, 308, 311, 326, 407, 644, 745
HpyAV	CCTTC	6 cut(s)	88, 172, 493, 505, 511, 676
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	303, 435
HpyCH4V	TGCA	3 cut(s)	666, 718, 790
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 338, 663
HpyF3I	CTNAG	2 cut(s)	669, 870
HpySE526I	ACGT	2 cut(s)	303, 435
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	812
HspAI	GCGC	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	449
KroI	GCCGGC	2 cut(s)	251, 425
KroNI	GCCGGC	2 cut(s)	253, 427
Ksp22I	TGATCA	2 cut(s)	553, 628
Kzo9I	GATC	2 cut(s)	553, 628
Lsp1109I	GCAGC	3 cut(s)	162, 211, 352
LweI	GCATC	2 cut(s)	264, 634
MaeI	CTAG	2 cut(s)	708, 855
MaeII	ACGT	2 cut(s)	303, 435
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	2 cut(s)	555, 630
MboI	GATC	2 cut(s)	553, 628
MhlI	GDGCHC	2 cut(s)	435, 668
MluCI	AATT	4 cut(s)	107, 466, 712, 785
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	69, 495
MreI	CGCCGGCG	1 cut(s)	425
MroNI	GCCGGC	2 cut(s)	251, 425
MseI	TTAA	2 cut(s)	591, 603
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	252, 426, 797
MspR9I	CCNGG	3 cut(s)	182, 370, 797
MvaI	CCWGG	2 cut(s)	182, 370
MwoI	GCNNNNNNNGC	3 cut(s)	196, 338, 663
NaeI	GCCGGC	2 cut(s)	253, 427
NciI	CCSGG	1 cut(s)	797
NdeII	GATC	2 cut(s)	553, 628
NgoMIV	GCCGGC	2 cut(s)	251, 425
NlaIII	CATG	1 cut(s)	812
NlaIV	GGNNCC	2 cut(s)	160, 447
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 399
PdiI	GCCGGC	2 cut(s)	253, 427
PfeI	GAWTC	2 cut(s)	41, 138
PflFI	GACNNNGTC	3 cut(s)	173, 302, 311
PflMI	CCANNNNNTGG	1 cut(s)	799
PkrI	GCNGC	9 cut(s)	103, 152, 194, 201, 343, 346, 367, 409, 649
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	2 cut(s)	159, 283
Psp5II	RGGWCCY	2 cut(s)	159, 283
Psp6I	CCWGG	2 cut(s)	180, 368
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	2 cut(s)	180, 368
PspN4I	GGNNCC	2 cut(s)	160, 447
PspPI	GGNCC	3 cut(s)	159, 184, 283
PspPPI	RGGWCCY	2 cut(s)	159, 283
PsyI	GACNNNGTC	3 cut(s)	173, 302, 311
RsaI	GTAC	2 cut(s)	209, 447
RsaNI	GTAC	2 cut(s)	208, 446
RseI	CAYNNNNRTG	1 cut(s)	813
SalI	GTCGAC	2 cut(s)	305, 323
SaqAI	TTAA	2 cut(s)	591, 603
SatI	GCNGC	9 cut(s)	102, 151, 193, 200, 342, 345, 366, 408, 648
Sau3AI	GATC	2 cut(s)	553, 628
Sau96I	GGNCC	3 cut(s)	159, 184, 283
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	182, 370, 797
SduI	GDGCHC	2 cut(s)	435, 668
SfaNI	GCATC	2 cut(s)	264, 634
SgrAI	CRCCGGYG	1 cut(s)	425
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	159, 283
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	4 cut(s)	107, 466, 712, 785
SspMI	CTAG	2 cut(s)	708, 855
StyD4I	CCNGG	3 cut(s)	180, 368, 795
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	306, 438
TaqI	TCGA	5 cut(s)	306, 324, 393, 642, 743
TasI	AATT	4 cut(s)	107, 466, 712, 785
TauI	GCSGC	6 cut(s)	104, 195, 344, 347, 410, 650
TfiI	GAWTC	2 cut(s)	41, 138
Tru1I	TTAA	2 cut(s)	591, 603
Tru9I	TTAA	2 cut(s)	591, 603
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	3 cut(s)	150, 199, 365
TspDTI	ATGAA	2 cut(s)	70, 695
TspGWI	ACGGA	2 cut(s)	163, 444
TspRI	CASTG	1 cut(s)	673
Tth111I	GACNNNGTC	3 cut(s)	173, 302, 311
Van91I	CCANNNNNTGG	1 cut(s)	799
VneI	GTGCAC	1 cut(s)	664
VpaK11BI	GGWCC	2 cut(s)	159, 283
XagI	CCTNNNNNAGG	2 cut(s)	278, 359
XapI	RAATTY	2 cut(s)	107, 466
XmiI	GTMKAC	2 cut(s)	306, 324
XspI	CTAG	2 cut(s)	708, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.