RchiOBHm_Chr1g0320191

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005987
Physical Location & Seq
Reverse (-)
7841668 .. 7842618
951 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55036

Sequence Viewer

Length: 906 bp
ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCATGACCCCACCATCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAACCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCAACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGATGCCGTTGCCTACTTCACTCGCGCCGGCGGGCACGTCATTAAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGATTTTAAGAAGGCTTTGGAGAAGGGGAAGGCTAATGGTAGGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGTGTGGTTATACCGGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGAGTTGATCAGGTTTTCGTCGATGCGGCACACAGCATTGGGTGCACTGAGGTTGATATGAAGGAGATTGGGGCTAATTATTATACTAGTAATTTGCACAAGTGGTTCTTTTGCCCGCCGTTGATTGCGTTTTTGTATTGTAGGAAGTCGCCCAAGGGTGTGGAATTGCACCACCCGGTGGTTTCCCATGAGTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAGCCCTCAGTTGGTTGTAAGTGTCATTTCTATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

301

Amino Acids

33.32

Weight (kDa)

6.59

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 56 - 259 5.9e-11 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 802
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 426
AcsI RAATTY 2 cut(s) 107, 469
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 2 cut(s) 209, 450
AfiI CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
AgeI ACCGGT 1 cut(s) 589
AgsI TTSAA 4 cut(s) 238, 469, 570, 839
AhlI ACTAGT 1 cut(s) 710
AjiI CACGTC 2 cut(s) 304, 439
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 153, 202, 548
AluI AGCT 3 cut(s) 153, 202, 548
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 319
Alw44I GTGCAC 1 cut(s) 667
AoxI GGCC 3 cut(s) 3, 183, 363
ApaLI GTGCAC 1 cut(s) 667
ApeKI GCWGC 2 cut(s) 150, 199
ApoI RAATTY 2 cut(s) 107, 469
AsiGI ACCGGT 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 2 cut(s) 192, 428
AspS9I GGNCC 3 cut(s) 159, 184, 283
AsuC2I CCSGG 1 cut(s) 800
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 159, 283
BaeGI GKGCMC 2 cut(s) 438, 671
BanI GGYRCC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 2 cut(s) 162, 211
BccI CCATC 3 cut(s) 137, 326, 356
BceAI ACGGC 6 cut(s) 52, 163, 392, 442, 559, 727
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 182, 370
BclI TGATCA 2 cut(s) 556, 631
BcnI CCSGG 1 cut(s) 800
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 2 cut(s) 711, 858
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
BlsI GCNGC 8 cut(s) 103, 152, 194, 201, 343, 346, 367, 652
Bme1390I CCNGG 3 cut(s) 182, 370, 800
Bme18I GGWCC 2 cut(s) 159, 283
BmgBI CACGTC 2 cut(s) 304, 439
BmgT120I GGNCC 3 cut(s) 159, 184, 283
BmiI GGNNCC 2 cut(s) 160, 450
BmrFI CCNGG 3 cut(s) 182, 370, 800
BmsI GCATC 3 cut(s) 264, 394, 637
BpmI CTGGAG 2 cut(s) 164, 341
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 800
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 369, 777
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
Bse118I RCCGGY 3 cut(s) 251, 428, 589
BseBI CCWGG 2 cut(s) 182, 370
BseDI CCNNGG 2 cut(s) 369, 777
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
BseMII CTCAG 2 cut(s) 663, 887
BseRI GAGGAG 1 cut(s) 635
BseSI GKGCMC 2 cut(s) 438, 671
BseXI GCAGC 2 cut(s) 162, 211
BseYI CCCAGC 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 3 cut(s) 5, 185, 365
BshNI GGYRCC 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 4 cut(s) 252, 429, 590, 800
BslFI GGGAC 1 cut(s) 868
BslI CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 868
BsnI GGCC 3 cut(s) 5, 185, 365
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 438, 671
Bsp143I GATC 3 cut(s) 223, 556, 631
BspANI GGCC 3 cut(s) 5, 185, 365
BspCNI CTCAG 2 cut(s) 664, 886
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 160, 450
BspT107I GGYRCC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 3 cut(s) 251, 428, 589
BssAI RCCGGY 3 cut(s) 251, 428, 589
BssECI CCNNGG 2 cut(s) 369, 777
BssMI GATC 3 cut(s) 223, 556, 631
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 182, 370
BstAPI GCANNNNNTGC 1 cut(s) 666
BstC8I GCNNGC 6 cut(s) 197, 253, 363, 430, 434, 740
BstDEI CTNAG 2 cut(s) 672, 873
BstENI CCTNNNNNAGG 2 cut(s) 278, 359
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 2 cut(s) 192, 428
BstKTI GATC 3 cut(s) 226, 559, 634
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 3 cut(s) 223, 556, 631
BstMWI GCNNNNNNNGC 3 cut(s) 196, 338, 666
BstNI CCWGG 2 cut(s) 182, 370
BstSCI CCNGG 3 cut(s) 180, 368, 798
BstSLI GKGCMC 2 cut(s) 438, 671
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 162, 211
BstXI CCANNNNNNTGG 2 cut(s) 784, 818
BsuRI GGCC 3 cut(s) 5, 185, 365
BtgZI GCGATG 2 cut(s) 115, 417
BtrI CACGTC 2 cut(s) 304, 439
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 6 cut(s) 197, 253, 363, 430, 434, 740
CfoI GCGC 2 cut(s) 192, 428
Cfr10I RCCGGY 3 cut(s) 251, 428, 589
Cfr13I GGNCC 3 cut(s) 159, 184, 283
Csp6I GTAC 2 cut(s) 208, 449
CspAI ACCGGT 1 cut(s) 589
CviAII CATG 2 cut(s) 119, 812
CviQI GTAC 2 cut(s) 208, 449
DdeI CTNAG 2 cut(s) 672, 873
DpnI GATC 3 cut(s) 225, 558, 633
DpnII GATC 3 cut(s) 223, 556, 631
DraIII CACNNNGTG 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 777
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 159, 283
EcoNI CCTNNNNNAGG 2 cut(s) 278, 359
EcoO109I RGGNCCY 2 cut(s) 159, 283
EcoRI GAATTC 2 cut(s) 107, 469
EcoRII CCWGG 2 cut(s) 180, 368
EcoT14I CCWWGG 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 2 cut(s) 122, 815
FaiI YATR 8 cut(s) 120, 561, 587, 683, 708, 813, 819, 899
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 716, 748
FaqI GGGAC 1 cut(s) 868
FatI CATG 2 cut(s) 118, 811
FauI CCCGC 3 cut(s) 275, 425, 747
FbaI TGATCA 2 cut(s) 556, 631
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
FspBI CTAG 2 cut(s) 711, 858
GlaI GCGC 2 cut(s) 191, 427
GluI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 2 cut(s) 164, 341
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 3 cut(s) 5, 185, 365
HapII CCGG 4 cut(s) 252, 429, 590, 800
HhaI GCGC 2 cut(s) 192, 428
Hin1II CATG 2 cut(s) 122, 815
Hin6I GCGC 2 cut(s) 190, 426
HinP1I GCGC 2 cut(s) 190, 426
HincII GTYRAC 2 cut(s) 307, 325
HindII GTYRAC 2 cut(s) 307, 325
HinfI GANTC 3 cut(s) 41, 138, 170
HpaII CCGG 4 cut(s) 252, 429, 590, 800
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 307, 325, 669
Hpy188I TCNGA 2 cut(s) 94, 382
Hpy8I GTNNAC 3 cut(s) 307, 325, 669
Hpy99I CGWCG 2 cut(s) 326, 647
HpyAV CCTTC 5 cut(s) 88, 496, 508, 514, 679
HpyCH4IV ACGT 2 cut(s) 303, 438
HpyCH4V TGCA 3 cut(s) 669, 721, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 338, 666
HpyF3I CTNAG 2 cut(s) 672, 873
HpySE526I ACGT 2 cut(s) 303, 438
Hsp92II CATG 2 cut(s) 122, 815
HspAI GCGC 2 cut(s) 190, 426
KpnI GGTACC 1 cut(s) 452
KroI GCCGGC 2 cut(s) 251, 428
KroNI GCCGGC 2 cut(s) 253, 430
Ksp22I TGATCA 2 cut(s) 556, 631
Kzo9I GATC 3 cut(s) 223, 556, 631
Lsp1109I GCAGC 2 cut(s) 162, 211
LweI GCATC 3 cut(s) 264, 394, 637
MaeI CTAG 2 cut(s) 711, 858
MaeII ACGT 2 cut(s) 303, 438
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 225, 558, 633
MboI GATC 3 cut(s) 223, 556, 631
MhlI GDGCHC 2 cut(s) 438, 671
MluCI AATT 5 cut(s) 107, 469, 700, 715, 788
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 69, 498
MreI CGCCGGCG 1 cut(s) 428
MroNI GCCGGC 2 cut(s) 251, 428
MseI TTAA 4 cut(s) 444, 498, 594, 606
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 4 cut(s) 252, 429, 590, 800
MspR9I CCNGG 3 cut(s) 182, 370, 800
MvaI CCWGG 2 cut(s) 182, 370
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 196, 338, 666
NaeI GCCGGC 2 cut(s) 253, 430
NciI CCSGG 1 cut(s) 800
NdeII GATC 3 cut(s) 223, 556, 631
NgoMIV GCCGGC 2 cut(s) 251, 428
NlaIII CATG 2 cut(s) 122, 815
NlaIV GGNNCC 2 cut(s) 160, 450
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 399
PdiI GCCGGC 2 cut(s) 253, 430
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 2 cut(s) 173, 302
PflMI CCANNNNNTGG 1 cut(s) 802
PinAI ACCGGT 1 cut(s) 589
PkrI GCNGC 8 cut(s) 103, 152, 194, 201, 343, 346, 367, 652
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 159, 283
Psp5II RGGWCCY 2 cut(s) 159, 283
Psp6I CCWGG 2 cut(s) 180, 368
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 2 cut(s) 160, 450
PspPI GGNCC 3 cut(s) 159, 184, 283
PspPPI RGGWCCY 2 cut(s) 159, 283
PsyI GACNNNGTC 2 cut(s) 173, 302
RsaI GTAC 2 cut(s) 209, 450
RsaNI GTAC 2 cut(s) 208, 449
RseI CAYNNNNRTG 1 cut(s) 816
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 4 cut(s) 444, 498, 594, 606
SatI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
Sau3AI GATC 3 cut(s) 223, 556, 631
Sau96I GGNCC 3 cut(s) 159, 184, 283
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 182, 370, 800
SduI GDGCHC 2 cut(s) 438, 671
SfaNI GCATC 3 cut(s) 264, 394, 637
SgrAI CRCCGGYG 1 cut(s) 428
SinI GGWCC 2 cut(s) 159, 283
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 5 cut(s) 107, 469, 700, 715, 788
SspMI CTAG 2 cut(s) 711, 858
StyD4I CCNGG 3 cut(s) 180, 368, 798
StyI CCWWGG 1 cut(s) 777
TaiI ACGT 2 cut(s) 306, 441
TaqI TCGA 3 cut(s) 324, 393, 645
TasI AATT 5 cut(s) 107, 469, 700, 715, 788
TauI GCSGC 6 cut(s) 104, 195, 344, 347, 368, 653
TfiI GAWTC 2 cut(s) 41, 138
Tru1I TTAA 4 cut(s) 444, 498, 594, 606
Tru9I TTAA 4 cut(s) 444, 498, 594, 606
TscAI CASTG 1 cut(s) 676
TseI GCWGC 2 cut(s) 150, 199
TspDTI ATGAA 2 cut(s) 70, 698
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 676
Tth111I GACNNNGTC 2 cut(s) 173, 302
Van91I CCANNNNNTGG 1 cut(s) 802
VneI GTGCAC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 159, 283
XagI CCTNNNNNAGG 2 cut(s) 278, 359
XapI RAATTY 2 cut(s) 107, 469
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 711, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.