Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005987

Physical Location & Seq

Genomic Coordinates Forward (+)

7772305 .. 7773254

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCTCTTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTTCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCATCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGACGCCGTCGTCATGCTCCACTACGCCTACGGCGCCGTCAAGAAGTCGATTGAGGCCTACGTCACTCACGCCGGCGGGCACGTCATTGAGGTGCCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAGGCTTTGGACAAGGGGAAGGCTAATGGTAGGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGGTTCGTCGATGCGGCACACAGCATTGGGTGCACTGAGGTTGATATGAAGGAGATTGGGGCTGATTATTATACTAGTAATTTGCACAAGTGGTTCTTTTGCCCGCCGTCGATTGCTTTTTTGTATTGTAGGAAGTCGCCCAAGGGTGTGGAATTGCACCACCCGGTGGTTTCCCATGAGTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAGCCCTCAGTTGGTTGTAAGTGTCATTTCTATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

296

Amino Acids

32.82

Weight (kDa)

6.29

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26600 AT5G26600
fragaria_vesca	FvH4_6g08451 FvH4_6g08451 FvH4_6g08451 FvH4_6g08451
malus_domestica	MD04G1186700.v1.1 MD12G1200100.v1.1
prunus_persica	Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1 Prupe.6G304900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0320191 RchiOBHm_Chr2g0094871 RchiOBHm_Chr3g0458521 RchiOBHm_Chr5g0036671
rosa_laevigata	RLG00000025151
rosa_multiflora	Rmu_sc0002570.1_g000003 Rmu_sc0013809.1_g000010 Rmu_sc0027728.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421010
rosa_rugosa	Rorug03G0029400 Rorug05G0307700
rosa_samantha	Rh3BG090800 Rh3CG090900 Rh3DG091700
rosa_wichuraiana	Rw3G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 410
AccB1I	GGYRCC	2 cut(s)	434, 493
AccB7I	CCANNNNNTGG	1 cut(s)	787
AccI	GTMKAC	2 cut(s)	306, 324
AcsI	RAATTY	2 cut(s)	107, 514
AcyI	GRCGYC	2 cut(s)	405, 435
AdeI	CACNNNGTG	1 cut(s)	787
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	280, 361, 787, 862
AgsI	TTSAA	4 cut(s)	238, 514, 615, 824
AhlI	ACTAGT	1 cut(s)	695
AjiI	CACGTC	2 cut(s)	304, 484
AjnI	CCWGG	2 cut(s)	180, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	153, 202, 593
AluI	AGCT	3 cut(s)	153, 202, 593
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	652
AoxI	GGCC	4 cut(s)	3, 183, 363, 456
ApaLI	GTGCAC	1 cut(s)	652
ApeKI	GCWGC	2 cut(s)	150, 199
ApoI	RAATTY	2 cut(s)	107, 514
AspLEI	GCGC	2 cut(s)	192, 437
AspS9I	GGNCC	3 cut(s)	159, 184, 283
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	159, 283
BaeGI	GKGCMC	3 cut(s)	483, 498, 656
BanI	GGYRCC	2 cut(s)	434, 493
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	162, 211
BccI	CCATC	2 cut(s)	326, 356
BceAI	ACGGC	8 cut(s)	52, 163, 392, 422, 448, 487, 604, 712
BciT130I	CCWGG	2 cut(s)	182, 370
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	695
BfaI	CTAG	2 cut(s)	696, 843
BfoI	RGCGCY	2 cut(s)	193, 438
BisI	GCNGC	8 cut(s)	102, 151, 193, 200, 342, 345, 366, 636
BlsI	GCNGC	8 cut(s)	103, 152, 194, 201, 343, 346, 367, 637
Bme1390I	CCNGG	3 cut(s)	182, 370, 785
Bme18I	GGWCC	2 cut(s)	159, 283
BmgBI	CACGTC	2 cut(s)	304, 484
BmgT120I	GGNCC	3 cut(s)	159, 184, 283
BmiI	GGNNCC	3 cut(s)	160, 436, 495
BmrFI	CCNGG	3 cut(s)	182, 370, 785
BmsI	GCATC	2 cut(s)	264, 622
BpmI	CTGGAG	2 cut(s)	164, 341
Bpu14I	TTCGAA	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	785
BsaHI	GRCGYC	2 cut(s)	405, 435
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	369, 620, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 361, 787, 862
Bse118I	RCCGGY	2 cut(s)	251, 473
BseBI	CCWGG	2 cut(s)	182, 370
BseDI	CCNNGG	3 cut(s)	369, 620, 762
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	4 cut(s)	280, 361, 787, 862
BseMII	CTCAG	2 cut(s)	648, 872
BseSI	GKGCMC	3 cut(s)	483, 498, 656
BseXI	GCAGC	2 cut(s)	162, 211
BseYI	CCCAGC	2 cut(s)	186, 216
BshFI	GGCC	4 cut(s)	5, 185, 365, 458
BshNI	GGYRCC	2 cut(s)	434, 493
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	3 cut(s)	252, 474, 785
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	4 cut(s)	280, 361, 787, 862
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	853
BsnI	GGCC	4 cut(s)	5, 185, 365, 458
Bso31I	GGTCTC	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	483, 498, 656
Bsp143I	GATC	2 cut(s)	223, 601
BspANI	GGCC	4 cut(s)	5, 185, 365, 458
BspCNI	CTCAG	2 cut(s)	649, 871
BspLI	GGNNCC	3 cut(s)	160, 436, 495
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	2 cut(s)	434, 493
BspTNI	GGTCTC	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	251, 473
BssAI	RCCGGY	2 cut(s)	251, 473
BssECI	CCNNGG	3 cut(s)	369, 620, 762
BssMI	GATC	2 cut(s)	223, 601
BssNI	GRCGYC	2 cut(s)	405, 435
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	182, 370
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	2 cut(s)	405, 435
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	6 cut(s)	197, 253, 363, 475, 479, 725
BstDEI	CTNAG	2 cut(s)	657, 858
BstDSI	CCRYGG	1 cut(s)	620
BstENI	CCTNNNNNAGG	2 cut(s)	278, 359
BstF5I	GGATG	1 cut(s)	258
BstH2I	RGCGCY	2 cut(s)	193, 438
BstHHI	GCGC	2 cut(s)	192, 437
BstKTI	GATC	2 cut(s)	226, 604
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	223, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 338, 434, 651
BstNI	CCWGG	2 cut(s)	182, 370
BstSCI	CCNGG	3 cut(s)	180, 368, 783
BstSLI	GKGCMC	3 cut(s)	483, 498, 656
BstV1I	GCAGC	2 cut(s)	162, 211
BstXI	CCANNNNNNTGG	2 cut(s)	769, 803
BsuRI	GGCC	4 cut(s)	5, 185, 365, 458
BtgI	CCRYGG	1 cut(s)	620
BtrI	CACGTC	2 cut(s)	304, 484
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	6 cut(s)	197, 253, 363, 475, 479, 725
CfoI	GCGC	2 cut(s)	192, 437
Cfr10I	RCCGGY	2 cut(s)	251, 473
Cfr13I	GGNCC	3 cut(s)	159, 184, 283
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	415, 797
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	657, 858
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	2 cut(s)	225, 603
DpnII	GATC	2 cut(s)	223, 601
DraIII	CACNNNGTG	1 cut(s)	787
DrdI	GACNNNNNNGTC	2 cut(s)	128, 410
DseDI	GACNNNNNNGTC	2 cut(s)	128, 410
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	762
Eco147I	AGGCCT	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	159, 283
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 359
EcoO109I	RGGNCCY	2 cut(s)	159, 283
EcoRI	GAATTC	2 cut(s)	107, 514
EcoRII	CCWGG	2 cut(s)	180, 368
EcoT14I	CCWWGG	1 cut(s)	762
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	2 cut(s)	418, 800
FaiI	YATR	7 cut(s)	416, 606, 668, 693, 798, 804, 884
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	2 cut(s)	414, 796
FauI	CCCGC	3 cut(s)	275, 470, 732
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	2 cut(s)	306, 324
Fnu4HI	GCNGC	8 cut(s)	102, 151, 193, 200, 342, 345, 366, 636
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	8 cut(s)	102, 151, 193, 200, 342, 345, 366, 636
FspBI	CTAG	2 cut(s)	696, 843
GlaI	GCGC	2 cut(s)	191, 436
GluI	GCNGC	8 cut(s)	102, 151, 193, 200, 342, 345, 366, 636
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	2 cut(s)	164, 341
HaeII	RGCGCY	2 cut(s)	193, 438
HaeIII	GGCC	4 cut(s)	5, 185, 365, 458
HapII	CCGG	3 cut(s)	252, 474, 785
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	2 cut(s)	192, 437
Hin1I	GRCGYC	2 cut(s)	405, 435
Hin1II	CATG	2 cut(s)	418, 800
Hin6I	GCGC	2 cut(s)	190, 435
HinP1I	GCGC	2 cut(s)	190, 435
HincII	GTYRAC	2 cut(s)	307, 325
HindII	GTYRAC	2 cut(s)	307, 325
HinfI	GANTC	3 cut(s)	41, 138, 170
HpaII	CCGG	3 cut(s)	252, 474, 785
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	307, 325, 654
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	3 cut(s)	307, 325, 654
Hpy99I	CGWCG	8 cut(s)	134, 308, 311, 326, 407, 413, 632, 733
HpyAV	CCTTC	5 cut(s)	88, 100, 541, 559, 664
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	303, 462, 483
HpyCH4V	TGCA	3 cut(s)	654, 706, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 338, 434, 651
HpyF3I	CTNAG	2 cut(s)	657, 858
HpySE526I	ACGT	3 cut(s)	303, 462, 483
Hsp92I	GRCGYC	2 cut(s)	405, 435
Hsp92II	CATG	2 cut(s)	418, 800
HspAI	GCGC	2 cut(s)	190, 435
KasI	GGCGCC	1 cut(s)	434
KroI	GCCGGC	2 cut(s)	251, 473
KroNI	GCCGGC	2 cut(s)	253, 475
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	223, 601
LmnI	GCTCC	1 cut(s)	423
Lsp1109I	GCAGC	2 cut(s)	162, 211
LweI	GCATC	2 cut(s)	264, 622
MaeI	CTAG	2 cut(s)	696, 843
MaeII	ACGT	3 cut(s)	303, 462, 483
MaeIII	GTNAC	2 cut(s)	463, 532
MalI	GATC	2 cut(s)	225, 603
MboI	GATC	2 cut(s)	223, 601
MhlI	GDGCHC	3 cut(s)	483, 498, 656
MluCI	AATT	4 cut(s)	107, 514, 700, 773
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	69, 543
MreI	CGCCGGCG	1 cut(s)	473
MroNI	GCCGGC	2 cut(s)	251, 473
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	491, 801
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	252, 474, 785
MspR9I	CCNGG	3 cut(s)	182, 370, 785
MvaI	CCWGG	2 cut(s)	182, 370
MwoI	GCNNNNNNNGC	4 cut(s)	196, 338, 434, 651
NaeI	GCCGGC	2 cut(s)	253, 475
NarI	GGCGCC	1 cut(s)	435
NciI	CCSGG	1 cut(s)	785
NdeII	GATC	2 cut(s)	223, 601
NgoMIV	GCCGGC	2 cut(s)	251, 473
NlaIII	CATG	2 cut(s)	418, 800
NlaIV	GGNNCC	3 cut(s)	160, 436, 495
NmuCI	GTSAC	1 cut(s)	463
NspV	TTCGAA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 300, 399
PdiI	GCCGGC	2 cut(s)	253, 475
PfeI	GAWTC	2 cut(s)	41, 138
PflFI	GACNNNGTC	4 cut(s)	173, 302, 311, 407
PflMI	CCANNNNNTGG	1 cut(s)	787
PkrI	GCNGC	8 cut(s)	103, 152, 194, 201, 343, 346, 367, 637
PleI	GAGTC	1 cut(s)	164
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	2 cut(s)	159, 283
Psp5II	RGGWCCY	2 cut(s)	159, 283
Psp6I	CCWGG	2 cut(s)	180, 368
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	2 cut(s)	180, 368
PspN4I	GGNNCC	3 cut(s)	160, 436, 495
PspPI	GGNCC	3 cut(s)	159, 184, 283
PspPPI	RGGWCCY	2 cut(s)	159, 283
PsyI	GACNNNGTC	4 cut(s)	173, 302, 311, 407
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	491, 801
SalI	GTCGAC	2 cut(s)	305, 323
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	8 cut(s)	102, 151, 193, 200, 342, 345, 366, 636
Sau3AI	GATC	2 cut(s)	223, 601
Sau96I	GGNCC	3 cut(s)	159, 184, 283
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	182, 370, 785
SduI	GDGCHC	3 cut(s)	483, 498, 656
SfaNI	GCATC	2 cut(s)	264, 622
SfoI	GGCGCC	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	473
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	159, 283
SmiMI	CAYNNNNRTG	2 cut(s)	491, 801
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	695
Sse9I	AATT	4 cut(s)	107, 514, 700, 773
SseBI	AGGCCT	1 cut(s)	458
SspDI	GGCGCC	1 cut(s)	434
SspMI	CTAG	2 cut(s)	696, 843
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	180, 368, 783
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	3 cut(s)	306, 465, 486
TaqI	TCGA	7 cut(s)	93, 306, 324, 393, 449, 630, 731
TasI	AATT	4 cut(s)	107, 514, 700, 773
TauI	GCSGC	6 cut(s)	104, 195, 344, 347, 368, 638
TfiI	GAWTC	2 cut(s)	41, 138
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	150, 199
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	70, 683
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	661
Tth111I	GACNNNGTC	4 cut(s)	173, 302, 311, 407
Van91I	CCANNNNNTGG	1 cut(s)	787
VneI	GTGCAC	1 cut(s)	652
VpaK11BI	GGWCC	2 cut(s)	159, 283
XagI	CCTNNNNNAGG	2 cut(s)	278, 359
XapI	RAATTY	2 cut(s)	107, 514
XmiI	GTMKAC	2 cut(s)	306, 324
XspI	CTAG	2 cut(s)	696, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.