AT5G26880

SpoU rRNA Methylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013498
Physical Location & Seq
Reverse (-)
9457691 .. 9459221
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26880.1

Sequence Viewer

Length: 792 bp
ATGGAGAGTTGCTGTCGGAGCGTCATAGCTTCAAGGACGTTTCATCTGCGGTCAAGTGGCCGTCTATTTCCCTCTCTTAGCTTAACTCATCTCAAGGGCAAGCTATCTCTCTCCATCAACTCGTTTTCCTCCAAGATTCAGTCTCATGCTCTCCGAGGAGTTGGTATAGGCGAGTCAGATAAGAAAAATCCCCTGCCGCGAGGGGCCGGAGAAGGAGTCAAGGAAGATGCGAGGAGTAAGCTGCTTCATGTAGTTTTGGTCTCTCCTCAGATTCCTGGGAATACAGGTTGCATTGCAAGAACATGTGCTGCCTCAGCTGTTGGTCTGCATTTAGTCGGGCCATTAGGTTTTCAAGTGGATGACGCCAGAGTTAAGCGAGCTGGTTTGGATTATTGGCCCTTTGTGGTTGTCAAAGCGCATAGCTCATGGGCTGAGTTTCAAGAATATTTCAGGCTTCAGGAGGGAGAAAAACGAATGATAGCTTTTACAAAAAGAGGAACAAGGATACATTCAGATTTTTCTTACCGATCAGGCGATTACCTCTTGTTCGGGTCAGAGACAAGCGGTCTACCTCCTGAAGCGCTGTCAGACTGCAATCACGAACCATATGGAGGGGGGACCCTACGTATTCCCATGGTAGAAACGTATGTGAGATGTCTGAATCTTTCGGTGAGTGTAGGGATTGCTCTGTATGAAGCGTCCAGACAACTTAACTATGAGCAAATCGAGTGTGCACCTCAAGGCTGTGTGAATGGTGAAGAACCATTGTTGACAGAGGATATCTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

263

Amino Acids

28.76

Weight (kDa)

8.1

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SpoU_methylase PF00588 82 - 231 2.8e-30 SpoU rRNA Methylase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26880
fragaria_vesca FvH4_7g00690 FvH4_7g00690 FvH4_7g00690
malus_domestica MD07G1006600.v1.1
prunus_persica Prupe.2G009700_v2.0.a1 Prupe.2G009700_v2.0.a1
pyrus_communis pycom07g00530
rosa_chinensis RchiOBHm_Chr1g0314911
rosa_laevigata RLG00000030755
rosa_roxburghii Rroxscaffold_4G00331680
rosa_rugosa Rorug01G0002900 Rorug01G0003000
rosa_samantha Rh1AG013900 Rh1BG005500 Rh1CG012200 Rh1DG007300
rosa_wichuraiana Rw1G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 568
AccII CGCG 1 cut(s) 199
AciI CCGC 3 cut(s) 49, 197, 564
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 440, 597
AcyI GRCGYC 1 cut(s) 363
AfeI AGCGCT 1 cut(s) 582
AfiI CCNNNNNNNGG 1 cut(s) 611
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 33, 353, 440
AhdI GACNNNNNGTC 1 cut(s) 564
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 8 cut(s) 29, 81, 103, 241, 317, 380, 423, 482
AluI AGCT 8 cut(s) 29, 81, 103, 241, 317, 380, 423, 482
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 3 cut(s) 147, 265, 551
Alw44I GTGCAC 1 cut(s) 732
Aor51HI AGCGCT 1 cut(s) 582
AoxI GGCC 4 cut(s) 58, 204, 338, 395
ApaLI GTGCAC 1 cut(s) 732
ApeKI GCWGC 2 cut(s) 241, 308
AspLEI GCGC 2 cut(s) 418, 583
AspS9I GGNCC 4 cut(s) 204, 338, 396, 618
AsuHPI GGTGA 2 cut(s) 682, 767
AvaII GGWCC 1 cut(s) 618
BaeGI GKGCMC 1 cut(s) 736
Bbv12I GWGCWC 1 cut(s) 736
BbvCI CCTCAGC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 228, 295
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 3 cut(s) 147, 265, 551
BfoI RGCGCY 1 cut(s) 584
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 3 cut(s) 197, 242, 309
BlsI GCNGC 3 cut(s) 198, 243, 310
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 618
BmeRI GACNNNNNGTC 1 cut(s) 564
BmgT120I GGNCC 4 cut(s) 204, 338, 396, 618
BmiI GGNNCC 3 cut(s) 205, 619, 620
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 313
BpuEI CTTGAG 2 cut(s) 77, 723
BsaAI YACGTR 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 154, 275, 633
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 154, 275, 633
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 281, 327, 423
BseRI GAGGAG 3 cut(s) 171, 247, 255
BseSI GKGCMC 1 cut(s) 736
BseXI GCAGC 2 cut(s) 228, 295
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 4 cut(s) 60, 206, 340, 397
BsiHKAI GWGCWC 1 cut(s) 736
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 3 cut(s) 147, 265, 551
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 4 cut(s) 60, 206, 340, 397
Bso31I GGTCTC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 736
Bsp143I GATC 1 cut(s) 527
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 3 cut(s) 49, 197, 564
BspANI GGCC 4 cut(s) 60, 206, 340, 397
BspCNI CTCAG 3 cut(s) 280, 326, 424
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 205, 619, 620
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 3 cut(s) 154, 275, 633
BssMI GATC 1 cut(s) 527
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 101, 378
BstDEI CTNAG 4 cut(s) 77, 267, 313, 432
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 2 cut(s) 418, 583
BstKTI GATC 1 cut(s) 530
BstMAI GTCTC 3 cut(s) 147, 265, 551
BstMBI GATC 1 cut(s) 527
BstMWI GCNNNNNNNGC 2 cut(s) 18, 314
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 736
BstSNI TACGTA 1 cut(s) 626
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 228, 295
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 4 cut(s) 60, 206, 340, 397
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 101, 378
CfoI GCGC 2 cut(s) 418, 583
Cfr13I GGNCC 4 cut(s) 204, 338, 396, 618
CseI GACGC 3 cut(s) 10, 371, 687
CviAII CATG 5 cut(s) 146, 248, 303, 426, 634
DdeI CTNAG 4 cut(s) 77, 267, 313, 432
DpnI GATC 1 cut(s) 529
DpnII GATC 1 cut(s) 527
DriI GACNNNNNGTC 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 58
Eam1105I GACNNNNNGTC 1 cut(s) 564
Eco105I TACGTA 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 633
Eco31I GGTCTC 1 cut(s) 265
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 618
Eco47III AGCGCT 1 cut(s) 582
Eco57I CTGAAG 2 cut(s) 440, 597
EcoO109I RGGNCCY 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 5 cut(s) 149, 251, 306, 429, 637
FaqI GGGAC 1 cut(s) 631
FatI CATG 5 cut(s) 145, 247, 302, 425, 633
FauNDI CATATG 1 cut(s) 607
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 3 cut(s) 197, 242, 309
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 197, 242, 309
GlaI GCGC 2 cut(s) 417, 582
GluI GCNGC 3 cut(s) 197, 242, 309
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 4 cut(s) 60, 206, 340, 397
HapII CCGG 1 cut(s) 207
HgaI GACGC 3 cut(s) 10, 371, 687
HhaI GCGC 2 cut(s) 418, 583
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 5 cut(s) 149, 251, 306, 429, 637
Hin6I GCGC 2 cut(s) 416, 581
HinP1I GCGC 2 cut(s) 416, 581
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HinfI GANTC 5 cut(s) 136, 173, 216, 271, 661
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 682, 767
Hpy166II GTNNAC 3 cut(s) 569, 734, 771
Hpy188I TCNGA 8 cut(s) 18, 155, 178, 270, 514, 556, 589, 660
Hpy188III TCNNGA 5 cut(s) 440, 458, 575, 599, 702
Hpy8I GTNNAC 3 cut(s) 569, 734, 771
HpyAV CCTTC 1 cut(s) 206
HpyCH4IV ACGT 3 cut(s) 38, 625, 644
HpyCH4V TGCA 5 cut(s) 291, 296, 328, 594, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 314
HpyF3I CTNAG 4 cut(s) 77, 267, 313, 432
HpySE526I ACGT 3 cut(s) 38, 625, 644
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 5 cut(s) 149, 251, 306, 429, 637
HspAI GCGC 2 cut(s) 416, 581
KflI GGGWCCC 1 cut(s) 618
Kzo9I GATC 1 cut(s) 527
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 2 cut(s) 228, 295
LweI GCATC 1 cut(s) 217
MaeII ACGT 3 cut(s) 38, 625, 644
MalI GATC 1 cut(s) 529
MboI GATC 1 cut(s) 527
MboII GAAGA 2 cut(s) 236, 770
MhlI GDGCHC 1 cut(s) 736
MlyI GAGTC 2 cut(s) 182, 225
MseI TTAA 3 cut(s) 83, 372, 711
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 18, 314
NcoI CCATGG 1 cut(s) 633
NdeI CATATG 1 cut(s) 607
NdeII GATC 1 cut(s) 527
NlaIII CATG 5 cut(s) 149, 251, 306, 429, 637
NlaIV GGNNCC 3 cut(s) 205, 619, 620
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PfeI GAWTC 3 cut(s) 136, 271, 661
PkrI GCNGC 3 cut(s) 198, 243, 310
PleI GAGTC 2 cut(s) 181, 224
PpsI GAGTC 2 cut(s) 181, 224
Ppu21I YACGTR 1 cut(s) 626
PpuMI RGGWCCY 1 cut(s) 618
PscI ACATGT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 205, 619, 620
PspPI GGNCC 4 cut(s) 204, 338, 396, 618
PspPPI RGGWCCY 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 317
SaqAI TTAA 3 cut(s) 83, 372, 711
SatI GCNGC 3 cut(s) 197, 242, 309
Sau3AI GATC 1 cut(s) 527
Sau96I GGNCC 4 cut(s) 204, 338, 396, 618
SchI GAGTC 2 cut(s) 182, 225
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 736
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 618
SmlI CTYRAG 2 cut(s) 92, 738
SmoI CTYRAG 2 cut(s) 92, 738
SnaBI TACGTA 1 cut(s) 626
SsiI CCGC 3 cut(s) 49, 197, 564
SspI AATATT 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 633
TaiI ACGT 3 cut(s) 41, 628, 647
TaqI TCGA 1 cut(s) 726
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 3 cut(s) 136, 271, 661
Tru1I TTAA 3 cut(s) 83, 372, 711
Tru9I TTAA 3 cut(s) 83, 372, 711
TseI GCWGC 2 cut(s) 241, 308
TspDTI ATGAA 3 cut(s) 32, 236, 708
VneI GTGCAC 1 cut(s) 732
VpaK11BI GGWCC 1 cut(s) 618
XceI RCATGY 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.