SpoU rRNA Methylase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G26880 |
| fragaria_vesca | FvH4_7g00690 FvH4_7g00690 FvH4_7g00690 |
| malus_domestica | MD07G1006600.v1.1 |
| prunus_persica | Prupe.2G009700_v2.0.a1 Prupe.2G009700_v2.0.a1 |
| pyrus_communis | pycom07g00530 |
| rosa_chinensis | RchiOBHm_Chr1g0314911 |
| rosa_laevigata | RLG00000030755 |
| rosa_roxburghii | Rroxscaffold_4G00331680 |
| rosa_rugosa | Rorug01G0002900 Rorug01G0003000 |
| rosa_samantha | Rh1AG013900 Rh1BG005500 Rh1CG012200 Rh1DG007300 |
| rosa_wichuraiana | Rw1G000650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 167 |
| AciI | CCGC | 4 cut(s) | 30, 82, 139, 165 |
| AgsI | TTSAA | 2 cut(s) | 37, 293 |
| AluBI | AGCT | 2 cut(s) | 144, 200 |
| AluI | AGCT | 2 cut(s) | 144, 200 |
| Alw26I | GTCTC | 1 cut(s) | 310 |
| AoxI | GGCC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 2 cut(s) | 141, 197 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 1 cut(s) | 127 |
| AxyI | CCTNAGG | 1 cut(s) | 312 |
| BbvI | GCAGC | 2 cut(s) | 153, 209 |
| BccI | CCATC | 2 cut(s) | 138, 197 |
| BcoDI | GTCTC | 1 cut(s) | 310 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BisI | GCNGC | 3 cut(s) | 31, 142, 198 |
| BlsI | GCNGC | 3 cut(s) | 32, 143, 199 |
| BmgT120I | GGNCC | 1 cut(s) | 127 |
| Bse21I | CCTNAGG | 1 cut(s) | 312 |
| BseMII | CTCAG | 1 cut(s) | 326 |
| BseRI | GAGGAG | 4 cut(s) | 82, 175, 234, 300 |
| BseXI | GCAGC | 2 cut(s) | 153, 209 |
| BshFI | GGCC | 1 cut(s) | 128 |
| BsmAI | GTCTC | 1 cut(s) | 310 |
| BsnI | GGCC | 1 cut(s) | 128 |
| BspACI | CCGC | 4 cut(s) | 30, 82, 139, 165 |
| BspANI | GGCC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 1 cut(s) | 325 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BsrBI | CCGCTC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 2 cut(s) | 28, 86 |
| BstDEI | CTNAG | 1 cut(s) | 312 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstMAI | GTCTC | 1 cut(s) | 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 147 |
| BstNSI | RCATGY | 1 cut(s) | 88 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 2 cut(s) | 153, 209 |
| Bsu36I | CCTNAGG | 1 cut(s) | 312 |
| BsuRI | GGCC | 1 cut(s) | 128 |
| BtsI | GCAGTG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 1 cut(s) | 261 |
| Cac8I | GCNNGC | 2 cut(s) | 28, 86 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 1 cut(s) | 127 |
| CviAII | CATG | 1 cut(s) | 85 |
| CviJI | RGCY | 5 cut(s) | 33, 128, 144, 200, 342 |
| CviKI_1 | RGCY | 5 cut(s) | 33, 128, 144, 200, 342 |
| DdeI | CTNAG | 1 cut(s) | 312 |
| Eco81I | CCTNAGG | 1 cut(s) | 312 |
| FaeI | CATG | 1 cut(s) | 88 |
| FaiI | YATR | 1 cut(s) | 86 |
| FatI | CATG | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 3 cut(s) | 31, 142, 198 |
| Fsp4HI | GCNGC | 3 cut(s) | 31, 142, 198 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GluI | GCNGC | 3 cut(s) | 31, 142, 198 |
| HaeIII | GGCC | 1 cut(s) | 128 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin1II | CATG | 1 cut(s) | 88 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HinfI | GANTC | 1 cut(s) | 286 |
| Hpy188I | TCNGA | 1 cut(s) | 350 |
| Hpy188III | TCNNGA | 2 cut(s) | 319, 336 |
| Hpy99I | CGWCG | 1 cut(s) | 16 |
| HpyAV | CCTTC | 2 cut(s) | 70, 253 |
| HpyCH4V | TGCA | 1 cut(s) | 197 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 147 |
| HpyF3I | CTNAG | 1 cut(s) | 312 |
| Hsp92II | CATG | 1 cut(s) | 88 |
| HspAI | GCGC | 1 cut(s) | 88 |
| LmnI | GCTCC | 2 cut(s) | 95, 213 |
| LpnPI | CCDG | 4 cut(s) | 218, 299, 321, 328 |
| Lsp1109I | GCAGC | 2 cut(s) | 153, 209 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MbiI | CCGCTC | 1 cut(s) | 167 |
| MboII | GAAGA | 3 cut(s) | 275, 281, 295 |
| MluCI | AATT | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 147 |
| NlaIII | CATG | 1 cut(s) | 88 |
| NmeAIII | GCCGAG | 1 cut(s) | 104 |
| NmuCI | GTSAC | 1 cut(s) | 316 |
| NspI | RCATGY | 1 cut(s) | 88 |
| PaeI | GCATGC | 1 cut(s) | 88 |
| PfeI | GAWTC | 1 cut(s) | 286 |
| PkrI | GCNGC | 3 cut(s) | 32, 143, 199 |
| PspPI | GGNCC | 1 cut(s) | 127 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| SatI | GCNGC | 3 cut(s) | 31, 142, 198 |
| Sau96I | GGNCC | 1 cut(s) | 127 |
| SetI | ASST | 4 cut(s) | 52, 146, 202, 318 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SphI | GCATGC | 1 cut(s) | 88 |
| Sse9I | AATT | 1 cut(s) | 330 |
| SsiI | CCGC | 4 cut(s) | 30, 82, 139, 165 |
| TasI | AATT | 1 cut(s) | 330 |
| TauI | GCSGC | 1 cut(s) | 33 |
| TfiI | GAWTC | 1 cut(s) | 286 |
| TscAI | CASTG | 1 cut(s) | 261 |
| TseFI | GTSAC | 1 cut(s) | 316 |
| TseI | GCWGC | 2 cut(s) | 141, 197 |
| Tsp45I | GTSAC | 1 cut(s) | 316 |
| TspRI | CASTG | 1 cut(s) | 261 |
| XceI | RCATGY | 1 cut(s) | 88 |