Rorug01G0003000

SpoU rRNA Methylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013498
Physical Location & Seq
Forward (+)
596133 .. 596607
475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0003000.1

Sequence Viewer

Length: 216 bp
ATGGCTCCGTGTGATGGTTTATCTGAGGCTAGTGTTGCGCCAATCTCCTCGATTCCAGTTTGGGTGGAGATCTTTGGTCTCCCGCCGACATTAGTCACATATGAGGTGGCTTTGATGGTCGGTTTTACACTGGGTTTCGTTTTCCAGCTTAACATGATAGGACTCGCCCCGGATTTCATCTTGAAATCCAAAGTGGCCCTGCGGGGCCCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

71

Amino Acids

7.53

Weight (kDa)

4.51

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26880
fragaria_vesca FvH4_7g00690 FvH4_7g00690 FvH4_7g00690
malus_domestica MD07G1006600.v1.1
prunus_persica Prupe.2G009700_v2.0.a1 Prupe.2G009700_v2.0.a1
pyrus_communis pycom07g00530
rosa_chinensis RchiOBHm_Chr1g0314911
rosa_laevigata RLG00000030755
rosa_roxburghii Rroxscaffold_4G00331680
rosa_rugosa Rorug01G0002900 Rorug01G0003000
rosa_samantha Rh1AG013900 Rh1BG005500 Rh1CG012200 Rh1DG007300
rosa_wichuraiana Rw1G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 202
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 83
AoxI GGCC 2 cut(s) 195, 205
ApaI GGGCCC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 3 cut(s) 196, 205, 206
AsuC2I CCSGG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 209
BccI CCATC 2 cut(s) 8, 109
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 196, 205, 206
BmiI GGNNCC 3 cut(s) 6, 206, 207
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 140
BoxI GACNNNNGTC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 56, 135
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 56, 135
BseRI GAGGAG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 209
BshFI GGCC 2 cut(s) 197, 207
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 2 cut(s) 197, 207
Bso31I GGTCTC 1 cut(s) 83
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 2 cut(s) 83, 202
BspANI GGCC 2 cut(s) 197, 207
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 6, 206, 207
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 2 cut(s) 56, 135
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 24, 213
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 2 cut(s) 197, 207
BtsIMutI CAGTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 196, 205, 206
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 5, 29, 110, 148, 197, 207
CviKI_1 RGCY 6 cut(s) 5, 29, 110, 148, 197, 207
DdeI CTNAG 2 cut(s) 24, 213
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 1 cut(s) 157
FaiI YATR 3 cut(s) 100, 102, 155
FatI CATG 1 cut(s) 153
FauI CCCGC 2 cut(s) 90, 195
FauNDI CATATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 209
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 197, 207
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 52, 162
HpaII CCGG 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 24, 213
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 69, 116, 158, 183, 212
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 3 cut(s) 19, 58, 97
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 100
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 3 cut(s) 6, 206, 207
NmuCI GTSAC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PshAI GACNNNNGTC 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 6, 206, 207
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 3 cut(s) 196, 205, 206
PsuI RGATCY 1 cut(s) 69
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 3 cut(s) 196, 205, 206
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 209
SetI ASST 3 cut(s) 108, 150, 214
SsiI CCGC 2 cut(s) 83, 202
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 168
TaqI TCGA 1 cut(s) 50
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 135
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.