FvH4_7g00690

SpoU rRNA Methylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013498
Physical Location & Seq
Forward (+)
1204114 .. 1207091
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00690.t2

Sequence Viewer

Length: 804 bp
ATGGACACCAGCTGCCTTAAAACCCTAAGCCCTTTCTCTCCTAATCCATTTCGCTCCAAGGCACGACCTCCTCTCTTTGCTGCTCTATACTTGTCTCATCTCAACCGCAAATTCCGCCTCTCTCTTTCCTCCACTCGCTTCTCTCCCCTCTGCTCACTCTTGAATGAAATGGTTGCAGCTGACGACAGGGGCAAAGAGTGTTCTTTGGCTCATGGGTCAGGGGTGGCACTCAACCAAGTCTCACGAACTAACATTCTTCAAGTCGTTCTCGTATCTCCTCAGATTCCTGGAAATACAGGTTGCATTGCCAGAACATGTGCAGCATCAGCAGTTGGCCTTCATCTGGTTGGGCCGATGGGCTTTCAGATTGATGATGCAAAATTAAAGCGTGCTGGATTGGACTATTGGCCATATGTGGTTGTTAAAGTTCACAGCTCATGGGCAGAGTTTCAAGACTATTTCAGGCAACAGGATGGTGAAAAGCGGTTGCTTGCATTTACAAAGAGAGGAACAAAATTTCATTCAGATTTCTCTTACAGAAGGGGTGATTTTCTCATATTTGGGTCAGAAACGAGCGGCCTACCACCTGAAGCCCTCCAAGATTGCAAGAGTGGAACATTTGGCGGTGGAACACTTAGGATTCCAATGGTTGAAACATATGTAAGATGTCTCAATCTCTCTGTAAGTGTTGGCATTGCTCTGTATGAAGCTTCGAGACAGCTAAATTACGAGCAACTTCAACTTCCGCCTGAAAATTGTATAGATAGTCAAAAATCAATCGTAACAGAGGATATTTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

268

Amino Acids

29.49

Weight (kDa)

8.76

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SpoU_methylase PF00588 80 - 229 5.8e-31 SpoU rRNA Methylase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26880
fragaria_vesca FvH4_7g00690 FvH4_7g00690 FvH4_7g00690
malus_domestica MD07G1006600.v1.1
prunus_persica Prupe.2G009700_v2.0.a1 Prupe.2G009700_v2.0.a1
pyrus_communis pycom07g00530
rosa_chinensis RchiOBHm_Chr1g0314911
rosa_laevigata RLG00000030755
rosa_roxburghii Rroxscaffold_4G00331680
rosa_rugosa Rorug01G0002900 Rorug01G0003000
rosa_samantha Rh1AG013900 Rh1BG005500 Rh1CG012200 Rh1DG007300
rosa_wichuraiana Rw1G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 576
AciI CCGC 6 cut(s) 106, 115, 484, 576, 624, 746
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 2 cut(s) 110, 515
AcuI CTGAAG 1 cut(s) 609
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 5 cut(s) 163, 260, 452, 653, 740
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 5 cut(s) 12, 179, 435, 710, 721
AluI AGCT 5 cut(s) 12, 179, 435, 710, 721
Alw26I GTCTC 4 cut(s) 99, 244, 674, 709
AoxI GGCC 4 cut(s) 334, 350, 407, 577
ApeKI GCWGC 4 cut(s) 12, 80, 176, 320
ApoI RAATTY 2 cut(s) 110, 515
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 488, 557
BalI TGGCCA 1 cut(s) 409
BbvI GCAGC 3 cut(s) 67, 188, 332
BccI CCATC 2 cut(s) 349, 467
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 4 cut(s) 99, 244, 674, 709
BisI GCNGC 5 cut(s) 13, 81, 177, 321, 577
BlsI GCNGC 5 cut(s) 14, 82, 178, 322, 578
Bme1390I CCNGG 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 332, 364
Bpu10I CCTNAGC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 2 cut(s) 303, 693
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 2 cut(s) 303, 693
BseMII CTCAG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 60, 267
BseXI GCAGC 3 cut(s) 67, 188, 332
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 4 cut(s) 336, 352, 409, 579
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 4 cut(s) 99, 244, 674, 709
BsnI GGCC 4 cut(s) 336, 352, 409, 579
BspACI CCGC 6 cut(s) 106, 115, 484, 576, 624, 746
BspANI GGCC 4 cut(s) 336, 352, 409, 579
BspCNI CTCAG 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 576
BsrDI GCAATG 2 cut(s) 303, 693
BssECI CCNNGG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 390, 492
BstDEI CTNAG 4 cut(s) 26, 279, 635, 801
BstF5I GGATG 1 cut(s) 478
BstMAI GTCTC 4 cut(s) 99, 244, 674, 709
BstMWI GCNNNNNNNGC 2 cut(s) 114, 326
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 3 cut(s) 67, 188, 332
BsuRI GGCC 4 cut(s) 336, 352, 409, 579
BtsCI GGATG 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 390, 492
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 3 cut(s) 212, 315, 438
DdeI CTNAG 4 cut(s) 26, 279, 635, 801
EaeI YGGCCR 1 cut(s) 407
EciI GGCGGA 2 cut(s) 104, 735
Eco130I CCWWGG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 215, 318, 441
FatI CATG 3 cut(s) 211, 314, 437
FauNDI CATATG 2 cut(s) 412, 658
Fnu4HI GCNGC 5 cut(s) 13, 81, 177, 321, 577
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 5 cut(s) 13, 81, 177, 321, 577
GluI GCNGC 5 cut(s) 13, 81, 177, 321, 577
HaeIII GGCC 4 cut(s) 336, 352, 409, 579
Hin1II CATG 3 cut(s) 215, 318, 441
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 2 cut(s) 283, 640
HphI GGTGA 2 cut(s) 488, 557
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 4 cut(s) 282, 366, 526, 568
Hpy188III TCNNGA 4 cut(s) 160, 243, 452, 714
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 347, 534
HpyCH4V TGCA 6 cut(s) 176, 303, 320, 377, 494, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 326
HpyF3I CTNAG 4 cut(s) 26, 279, 635, 801
Hsp92II CATG 3 cut(s) 215, 318, 441
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 3 cut(s) 67, 188, 332
LweI GCATC 2 cut(s) 332, 364
MaeIII GTNAC 1 cut(s) 781
MbiI CCGCTC 1 cut(s) 576
MboII GAAGA 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 409
MluCI AATT 5 cut(s) 110, 380, 515, 724, 754
MluNI TGGCCA 1 cut(s) 409
MnlI CCTC 9 cut(s) 78, 81, 128, 139, 158, 288, 500, 605, 781
Mox20I TGGCCA 1 cut(s) 409
MscI TGGCCA 1 cut(s) 409
MseI TTAA 3 cut(s) 18, 383, 423
Msp20I TGGCCA 1 cut(s) 409
MspA1I CMGCKG 2 cut(s) 12, 179
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 114, 326
NdeI CATATG 2 cut(s) 412, 658
NlaIII CATG 3 cut(s) 215, 318, 441
NspI RCATGY 1 cut(s) 318
PciI ACATGT 1 cut(s) 314
PfeI GAWTC 2 cut(s) 283, 640
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 5 cut(s) 14, 82, 178, 322, 578
PscI ACATGT 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 1 cut(s) 350
PvuII CAGCTG 2 cut(s) 12, 179
SaqAI TTAA 3 cut(s) 18, 383, 423
SatI GCNGC 5 cut(s) 13, 81, 177, 321, 577
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 288
SetI ASST 8 cut(s) 14, 70, 181, 301, 437, 589, 712, 723
SfaNI GCATC 2 cut(s) 332, 364
Sse9I AATT 5 cut(s) 110, 380, 515, 724, 754
SsiI CCGC 6 cut(s) 106, 115, 484, 576, 624, 746
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 713
TasI AATT 5 cut(s) 110, 380, 515, 724, 754
TauI GCSGC 1 cut(s) 579
TfiI GAWTC 2 cut(s) 283, 640
Tru1I TTAA 3 cut(s) 18, 383, 423
Tru9I TTAA 3 cut(s) 18, 383, 423
TseI GCWGC 4 cut(s) 12, 80, 176, 320
TspDTI ATGAA 4 cut(s) 180, 329, 509, 720
XapI RAATTY 2 cut(s) 110, 515
XceI RCATGY 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.