Prupe.2G009700_v2.0.a1

SpoU rRNA Methylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013498
Physical Location & Seq
Forward (+)
910175 .. 913986
3812 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G009700.2

Sequence Viewer

Length: 804 bp
ATGGACGCAAGCGGTTTGAGAATCCTAACCCCTTTCTCTCCTTTCCGAATGCGCTCAACAAAAGCTCCTCTCTTTGGTTCTCTGTACTTGGCTCATCTCAACCGCAAAGTCCGCCTCTCTCTGCACTCCACTCGTTTCTCTGCCCTCTGCTCTCTCTCTGATGGGGGCAAAGAGCATGGGGTAGGGGAAGCAGTGAAGGAAGTCTCACGAAACAAGATTCTTCAAGTGGTTCTAGTATCTCCTCAGATTCCTGGAAATACAGGTTGCATTGCCAGAACATGTGCAGCATCAGCTGTTGGACTTCACCTAGTTGGGCCATTAGGATTCAAGGTTGATGATGCAAAGTTAAAGCGAGCTGGATTGGACTATTGGCCATATGTGGTTGTTAAAGTTCACAGCTCATGGGCAGAGTTCCAAGACTATTTCAGGCAACAGGATGGTGAAAAGCGGTTGCTCGCATTTACAAAGAGAGGAACAAGTTTTCATTCAGGAGAGAGCTTAATCATTCTTGGTTTGGGTTCCTTGGATTTTTCTTACAGAAGAGGTGATTTTCTCATATTTGGCTCAGAAACCTCTGGCCTACCACCTGAAGTCCTCCAAGATTGCAACAGTGAAACATTTGGCGGTGGGACCATTAGGATTCCAATGGTTGAAACTTATGTAAGATGTCTGAATCTCTCTGTAAGTGTTGGCATTGCTTTGTATGAAGCTTCCAGACAGCTAAGTTACGAGCAGCTTCAATTTCCAAATGAAAACTGTATTGATCATGAACAATCATTTGTCTCCGAGGATATTTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

268

Amino Acids

29.46

Weight (kDa)

7.65

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26880
fragaria_vesca FvH4_7g00690 FvH4_7g00690 FvH4_7g00690
malus_domestica MD07G1006600.v1.1
prunus_persica Prupe.2G009700_v2.0.a1 Prupe.2G009700_v2.0.a1
pyrus_communis pycom07g00530
rosa_chinensis RchiOBHm_Chr1g0314911
rosa_laevigata RLG00000030755
rosa_roxburghii Rroxscaffold_4G00331680
rosa_rugosa Rorug01G0002900 Rorug01G0003000
rosa_samantha Rh1AG013900 Rh1BG005500 Rh1CG012200 Rh1DG007300
rosa_wichuraiana Rw1G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 12, 103, 112, 448, 624
AcoI YGGCCR 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 224, 328, 653, 740
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 8 cut(s) 65, 293, 356, 399, 498, 710, 721, 736
AluI AGCT 8 cut(s) 65, 293, 356, 399, 498, 710, 721, 736
Alw26I GTCTC 2 cut(s) 208, 787
AoxI GGCC 3 cut(s) 314, 371, 577
ApeKI GCWGC 2 cut(s) 284, 733
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 314, 630
AsuHPI GGTGA 3 cut(s) 296, 452, 557
AvaII GGWCC 1 cut(s) 630
BalI TGGCCA 1 cut(s) 373
BbvI GCAGC 2 cut(s) 296, 745
BccI CCATC 2 cut(s) 155, 431
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 208, 787
BfaI CTAG 2 cut(s) 233, 308
BisI GCNGC 2 cut(s) 285, 734
BlsI GCNGC 2 cut(s) 286, 735
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 2 cut(s) 314, 630
BmiI GGNNCC 2 cut(s) 520, 631
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 296, 328
BsaJI CCNNGG 2 cut(s) 522, 786
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 267, 693
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 522, 786
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 267, 693
BseMII CTCAG 2 cut(s) 257, 579
BseRI GAGGAG 2 cut(s) 57, 231
BseXI GCAGC 2 cut(s) 296, 745
BsgI GTGCAG 2 cut(s) 107, 303
BshFI GGCC 3 cut(s) 316, 373, 579
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 208, 787
BsmFI GGGAC 1 cut(s) 643
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 3 cut(s) 316, 373, 579
Bsp143I GATC 1 cut(s) 763
BspACI CCGC 5 cut(s) 12, 103, 112, 448, 624
BspANI GGCC 3 cut(s) 316, 373, 579
BspCNI CTCAG 2 cut(s) 256, 578
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 520, 631
BsrDI GCAATG 2 cut(s) 267, 693
BssECI CCNNGG 2 cut(s) 522, 786
BssMI GATC 1 cut(s) 763
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 611, 758
Bst6I CTCTTC 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 10, 354, 456
BstDEI CTNAG 3 cut(s) 243, 565, 722
BstF5I GGATG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 2 cut(s) 208, 787
BstMBI GATC 1 cut(s) 763
BstMWI GCNNNNNNNGC 2 cut(s) 111, 290
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 296, 745
BsuRI GGCC 3 cut(s) 316, 373, 579
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 616
Cac8I GCNNGC 3 cut(s) 10, 354, 456
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 314, 630
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 85
CviAII CATG 4 cut(s) 176, 279, 402, 767
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 243, 565, 722
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 4 cut(s) 179, 282, 405, 770
FaiI YATR 9 cut(s) 177, 280, 376, 378, 403, 557, 660, 705, 768
FaqI GGGAC 1 cut(s) 643
FatI CATG 4 cut(s) 175, 278, 401, 766
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 2 cut(s) 285, 734
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 285, 734
FspBI CTAG 2 cut(s) 233, 308
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 285, 734
HaeIII GGCC 3 cut(s) 316, 373, 579
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 179, 282, 405, 770
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 6 cut(s) 21, 217, 247, 324, 640, 673
HphI GGTGA 3 cut(s) 296, 452, 557
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 6 cut(s) 47, 160, 246, 568, 672, 787
Hpy188III TCNNGA 4 cut(s) 207, 489, 714, 767
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 611, 758
HpyCH4V TGCA 5 cut(s) 124, 267, 284, 341, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 290
HpyF3I CTNAG 3 cut(s) 243, 565, 722
Hsp92II CATG 4 cut(s) 179, 282, 405, 770
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 1 cut(s) 763
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 296, 745
LweI GCATC 2 cut(s) 296, 328
MaeI CTAG 2 cut(s) 233, 308
MaeIII GTNAC 1 cut(s) 725
MalI GATC 1 cut(s) 765
MboI GATC 1 cut(s) 763
MboII GAAGA 2 cut(s) 212, 552
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 1 cut(s) 740
MluNI TGGCCA 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 9 cut(s) 78, 125, 155, 252, 464, 536, 583, 605, 781
Mox20I TGGCCA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 373
MseI TTAA 3 cut(s) 347, 387, 500
Msp20I TGGCCA 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 111, 290
NdeI CATATG 1 cut(s) 376
NdeII GATC 1 cut(s) 763
NlaIII CATG 4 cut(s) 179, 282, 405, 770
NlaIV GGNNCC 2 cut(s) 520, 631
NspI RCATGY 1 cut(s) 282
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 278
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 21, 217, 247, 324, 640, 673
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 2 cut(s) 286, 735
PscI ACATGT 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 520, 631
PspPI GGNCC 2 cut(s) 314, 630
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 347, 387, 500
SatI GCNGC 2 cut(s) 285, 734
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 2 cut(s) 314, 630
ScrFI CCNGG 1 cut(s) 252
SfaNI GCATC 2 cut(s) 296, 328
SinI GGWCC 1 cut(s) 630
Sse9I AATT 1 cut(s) 740
SsiI CCGC 5 cut(s) 12, 103, 112, 448, 624
SspMI CTAG 2 cut(s) 233, 308
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 2 cut(s) 611, 758
TasI AATT 1 cut(s) 740
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 6 cut(s) 21, 217, 247, 324, 640, 673
Tru1I TTAA 3 cut(s) 347, 387, 500
Tru9I TTAA 3 cut(s) 347, 387, 500
TscAI CASTG 2 cut(s) 198, 616
TseI GCWGC 2 cut(s) 284, 733
TspDTI ATGAA 4 cut(s) 473, 720, 765, 783
TspRI CASTG 2 cut(s) 198, 616
VpaK11BI GGWCC 1 cut(s) 630
XceI RCATGY 1 cut(s) 282
XspI CTAG 2 cut(s) 233, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.