AT5G27110

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
9538572 .. 9540666
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27110.1

Sequence Viewer

Length: 2076 bp
ATGGAATCTTCAAAGTTGTTGTCTTTATTGCGAGAGTGTACCAATAGCACCAAGTCTCTAAGAAGAATCAAGCTTGTGCATCAGAGAATACTCACGTTGGGGTTACGAAGAGACGTAGTTTTATGCAAAAGTCTCATCAATGTCTACTTTACTTGTAAAGACCATTGCTCAGCGAGACACGTCTTCGAGAACTTCGATATACGATCGGATGTTTACATATGGAACTCTTTAATGTCTGGTTATTCAAAGAACTCAATGTTTCATGACACTCTTGAGGTTTTCAAGAGGTTGTTGAATTGCTCAATTTGTGTCCCTGATTCGTTTACTTTTCCGAATGTGATTAAGGCTTATGGTGCGTTGGGTAGAGAGTTTCTTGGTAGGATGATTCATACTCTTGTGGTGAAGAGTGGGTATGTTTGTGATGTGGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGAATTCACTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTAGCATCTTGGAACACGGTTATTTCGTGTTTTTATCAAAGTGGAGAGGCAGAGAAGGCTTTGGAGTTGTTTGGAAGAATGGAAAGTTCTGGCTTTGAACCAAATTCAGTTTCGTTGACGGTGGCTATATCGGCGTGTTCAAGGCTGTTGTGGTTGGAGAGAGGGAAGGAGATACATAGAAAATGTGTGAAGAAAGGGTTTGAGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGGAGGTGGCTAGGGAGGTTTTTCAGAAAATGCCTAGAAAGAGTTTGGTTGCTTGGAATTCTATGATCAAAGGTTATGTCGCTAAAGGAGACAGTAAGTCATGTGTTGAGATTTTGAATAGAATGATCATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGCATTTTGATGGCTTGCTCTCGCTCACGGAATCTCCTACATGGAAAATTTATACACGGTTATGTGATTAGAAGCGTTGTAAATGCAGATATCTATGTGAACTGTTCCTTGATTGATCTATACTTCAAGTGTGGTGAAGCAAATTTGGCTGAAACCGTCTTTTCAAAGACACAGAAGGACGTTGCTGAGTCATGGAATGTCATGATTTCTAGTTATATCAGTGTAGGTAATTGGTTTAAGGCTGTTGAAGTGTATGACCAAATGGTGAGTGTTGGAGTGAAGCCAGACGTGGTAACTTTCACAAGTGTTTTACCTGCTTGTTCGCAACTGGCTGCGTTAGAGAAAGGCAAACAGATTCATTTGTCCATTAGTGAGAGCAGGCTCGAAACAGACGAGTTGCTTTTGAGTGCGCTTCTTGACATGTATTCTAAATGCGGCAATGAAAAAGAGGCTTTTAGGATTTTCAACAGTATACCAAAGAAGGATGTTGTATCATGGACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCACTTTACCAGTTTGATGAAATGCAGAAGTTTGGTCTAAAACCTGATGGGGTTACTCTTCTTGCTGTATTGTCAGCTTGTGGTCATGCTGGGCTAATTGATGAGGGTCTCAAATTTTTCAGTCAAATGAGATCAAAGTACGGAATCGAGCCTATTATTGAACATTACTCGTGCATGATTGACATTCTTGGCCGAGCAGGTCGGTTGCTTGAAGCTTATGAAATTATTCAACAAACACCAGAGACAAGTGACAATGCAGAGCTTCTCAGTACTCTCTTCTCTGCTTGTTGCTTGCACCTGGAACATTCATTGGGAGATAGAATCGCAAGATTGCTTGTTGAGAATTATCCAGATGATGCATCAACCTACATGGTCTTGTTCAATTTGTATGCTTCTGGTGAGTCATGGGATGCAGCAAGACGAGTCAGATTAAAAATGAAAGAAATGGGATTGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAGTGACAAAGTGTGCCATTTCTTTGCTGAGGACAGGTCTCATTTACGAGCTGAGAACGTTTATGAGTGTCTTGCTCTTTTGAGTGGTCACATGGAATCCGGTCAATGA

Protein Analysis

691

Amino Acids

77.98

Weight (kDa)

6.79

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 171 - 219 1.9e-11 PPR repeat family
PPR PF01535 175 - 204 1.2e-07 PPR repeat
PPR_2 PF13041 273 - 320 1.1e-07 PPR repeat family
PPR_2 PF13041 377 - 421 9.3e-11 PPR repeat family
PPR PF01535 377 - 406 3e-06 PPR repeat
PPR_2 PF13041 474 - 521 3e-10 PPR repeat family
PPR PF01535 477 - 507 7.7e-08 PPR repeat
E_motif PF20431 596 - 655 6.2e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1261, 1670
AccI GTMKAC 2 cut(s) 144, 1411
AciI CCGC 1 cut(s) 1374
AclI AACGTT 1 cut(s) 2025
AclWI GGATC 1 cut(s) 1468
AcoI YGGCCR 1 cut(s) 1672
AcsI RAATTY 6 cut(s) 478, 619, 832, 986, 1081, 1595
AfaI GTAC 3 cut(s) 40, 1622, 1753
AflIII ACRYGT 2 cut(s) 178, 1359
AhdI GACNNNNNGTC 1 cut(s) 871
AjiI CACGTC 2 cut(s) 181, 1228
AjnI CCWGG 1 cut(s) 1779
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AluBI AGCT 5 cut(s) 73, 1559, 1697, 1744, 2018
AluI AGCT 5 cut(s) 73, 1559, 1697, 1744, 2018
Alw26I GTCTC 8 cut(s) 60, 105, 137, 169, 858, 1595, 1718, 2010
AlwI GGATC 1 cut(s) 1468
AoxI GGCC 1 cut(s) 1672
ApeKI GCWGC 3 cut(s) 1271, 1895, 1950
ApoI RAATTY 6 cut(s) 478, 619, 832, 986, 1081, 1595
ArsI GACNNNNNNTTYG 5 cut(s) 37, 837, 869, 928, 960
Asp700I GAANNNNTTC 1 cut(s) 1707
AspLEI GCGC 1 cut(s) 1351
AsuC2I CCSGG 1 cut(s) 1947
AsuHPI GGTGA 4 cut(s) 412, 1085, 1216, 1892
BauI CACGAG 1 cut(s) 1651
BbsI GAAGAC 1 cut(s) 175
BbvCI CCTCAGC 1 cut(s) 1995
BbvI GCAGC 3 cut(s) 1258, 1907, 1937
BccI CCATC 2 cut(s) 943, 1523
BciT130I CCWGG 1 cut(s) 1781
BclI TGATCA 2 cut(s) 840, 900
BcnI CCSGG 1 cut(s) 1947
BcoDI GTCTC 8 cut(s) 60, 105, 137, 169, 858, 1595, 1718, 2010
BfaI CTAG 3 cut(s) 786, 810, 1149
BfmI CTRYAG 1 cut(s) 1951
BfuAI ACCTGC 2 cut(s) 1261, 1670
BisI GCNGC 4 cut(s) 1272, 1375, 1896, 1951
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 4 cut(s) 1273, 1376, 1897, 1952
BmcAI AGTACT 1 cut(s) 1753
Bme1390I CCNGG 2 cut(s) 1781, 1947
BmeRI GACNNNNNGTC 1 cut(s) 871
BmgBI CACGTC 2 cut(s) 181, 1228
BmrFI CCNGG 2 cut(s) 1781, 1947
BmsI GCATC 5 cut(s) 88, 530, 1828, 1850, 1882
BpiI GAAGAC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 1995
Bpu1102I GCTNAGC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 1947
BsaI GGTCTC 2 cut(s) 1595, 2010
BsaWI WCCGGW 1 cut(s) 2066
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bse1I ACTGG 2 cut(s) 1272, 1492
Bse3DI GCAATG 2 cut(s) 163, 1384
BseBI CCWGG 1 cut(s) 1781
BseGI GGATG 4 cut(s) 214, 387, 1429, 1897
BseMI GCAATG 2 cut(s) 163, 1384
BseMII CTCAG 6 cut(s) 183, 498, 1116, 1762, 1986, 2010
BseNI ACTGG 2 cut(s) 1272, 1492
BseXI GCAGC 3 cut(s) 1258, 1907, 1937
BseYI CCCAGC 1 cut(s) 1571
Bsh1285I CGRYCG 2 cut(s) 206, 920
BshFI GGCC 1 cut(s) 1674
BsiEI CGRYCG 2 cut(s) 206, 920
BsiSI CCGG 2 cut(s) 1946, 2067
BslFI GGGAC 1 cut(s) 296
BsmAI GTCTC 8 cut(s) 60, 105, 137, 169, 858, 1595, 1718, 2010
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 1674
Bso31I GGTCTC 2 cut(s) 1595, 2010
Bsp143I GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
Bsp1720I GCTNAGC 1 cut(s) 169
BspACI CCGC 1 cut(s) 1374
BspANI GGCC 1 cut(s) 1674
BspCNI CTCAG 6 cut(s) 182, 499, 1117, 1761, 1987, 2011
BspHI TCATGA 2 cut(s) 262, 1140
BspMAI CTGCAG 1 cut(s) 1955
BspMI ACCTGC 2 cut(s) 1261, 1670
BspPI GGATC 1 cut(s) 1468
BspTNI GGTCTC 2 cut(s) 1595, 2010
BsrDI GCAATG 2 cut(s) 163, 1384
BsrI ACTGG 2 cut(s) 1272, 1492
BssMI GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
BssNAI GTATAC 1 cut(s) 1412
BssSI CACGAG 1 cut(s) 1651
Bst1107I GTATAC 1 cut(s) 1412
Bst2BI CACGAG 1 cut(s) 1651
Bst2UI CCWGG 1 cut(s) 1781
Bst4CI ACNGT 8 cut(s) 535, 637, 869, 998, 1043, 1096, 1409, 1441
Bst6I CTCTTC 4 cut(s) 103, 398, 1545, 1763
BstC8I GCNNGC 3 cut(s) 955, 1319, 1775
BstDEI CTNAG 7 cut(s) 59, 169, 507, 1125, 1748, 1995, 2019
BstF5I GGATG 4 cut(s) 214, 387, 1429, 1897
BstHHI GCGC 1 cut(s) 1351
BstKTI GATC 7 cut(s) 206, 843, 903, 1057, 1449, 1463, 1616
BstMAI GTCTC 8 cut(s) 60, 105, 137, 169, 858, 1595, 1718, 2010
BstMBI GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
BstMCI CGRYCG 2 cut(s) 206, 920
BstMWI GCNNNNNNNGC 4 cut(s) 353, 572, 647, 1085
BstNI CCWGG 1 cut(s) 1781
BstNSI RCATGY 1 cut(s) 1363
BstSCI CCNGG 2 cut(s) 1779, 1945
BstSFI CTRYAG 1 cut(s) 1951
BstV1I GCAGC 3 cut(s) 1258, 1907, 1937
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 1460
BstYI RGATCY 1 cut(s) 1460
BstZ17I GTATAC 1 cut(s) 1412
BsuRI GGCC 1 cut(s) 1674
BtrI CACGTC 2 cut(s) 181, 1228
BtsCI GGATG 4 cut(s) 214, 387, 1429, 1897
BtsIMutI CAGTG 1 cut(s) 1165
BveI ACCTGC 2 cut(s) 1261, 1670
Cac8I GCNNGC 3 cut(s) 955, 1319, 1775
CciI TCATGA 2 cut(s) 262, 1140
CfoI GCGC 1 cut(s) 1351
Csp6I GTAC 3 cut(s) 39, 1621, 1752
CviQI GTAC 3 cut(s) 39, 1621, 1752
DdeI CTNAG 7 cut(s) 59, 169, 507, 1125, 1748, 1995, 2019
DpnI GATC 7 cut(s) 205, 842, 902, 1056, 1448, 1462, 1615
DpnII GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
DriI GACNNNNNGTC 1 cut(s) 871
EaeI YGGCCR 1 cut(s) 1672
Eam1104I CTCTTC 4 cut(s) 103, 398, 1545, 1763
Eam1105I GACNNNNNGTC 1 cut(s) 871
EarI CTCTTC 4 cut(s) 103, 398, 1545, 1763
Eco31I GGTCTC 2 cut(s) 1595, 2010
Eco32I GATATC 1 cut(s) 1030
EcoRI GAATTC 2 cut(s) 478, 832
EcoRII CCWGG 1 cut(s) 1779
EcoRV GATATC 1 cut(s) 1030
EcoT22I ATGCAT 1 cut(s) 1843
Esp3I CGTCTC 1 cut(s) 105
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 1 cut(s) 296
FauNDI CATATG 1 cut(s) 218
FbaI TGATCA 2 cut(s) 840, 900
FblI GTMKAC 2 cut(s) 144, 1411
Fnu4HI GCNGC 4 cut(s) 1272, 1375, 1896, 1951
FokI GGATG 4 cut(s) 221, 394, 1436, 1904
Fsp4HI GCNGC 4 cut(s) 1272, 1375, 1896, 1951
FspBI CTAG 3 cut(s) 786, 810, 1149
GlaI GCGC 1 cut(s) 1350
GluI GCNGC 4 cut(s) 1272, 1375, 1896, 1951
GsaI CCCAGC 1 cut(s) 1575
HaeIII GGCC 1 cut(s) 1674
HapII CCGG 2 cut(s) 1946, 2067
HhaI GCGC 1 cut(s) 1351
Hin6I GCGC 1 cut(s) 1349
HinP1I GCGC 1 cut(s) 1349
HincII GTYRAC 2 cut(s) 633, 1472
HindII GTYRAC 2 cut(s) 633, 1472
HindIII AAGCTT 2 cut(s) 71, 1695
HpaII CCGG 2 cut(s) 1946, 2067
HphI GGTGA 4 cut(s) 412, 1085, 1216, 1892
Hpy166II GTNNAC 9 cut(s) 39, 145, 214, 324, 633, 736, 1039, 1412, 1472
Hpy188I TCNGA 6 cut(s) 84, 208, 333, 801, 927, 1910
Hpy188III TCNNGA 7 cut(s) 187, 263, 272, 283, 1141, 1355, 1832
Hpy8I GTNNAC 9 cut(s) 39, 145, 214, 324, 633, 736, 1039, 1412, 1472
HpyAV CCTTC 5 cut(s) 565, 676, 902, 1108, 1414
HpyCH4III ACNGT 8 cut(s) 535, 637, 869, 998, 1043, 1096, 1409, 1441
HpyCH4IV ACGT 6 cut(s) 95, 114, 180, 1119, 1227, 2025
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 572, 647, 1085
HpyF3I CTNAG 7 cut(s) 59, 169, 507, 1125, 1748, 1995, 2019
HpySE526I ACGT 6 cut(s) 95, 114, 180, 1119, 1227, 2025
HspAI GCGC 1 cut(s) 1349
Ksp22I TGATCA 2 cut(s) 840, 900
Kzo9I GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
Lsp1109I GCAGC 3 cut(s) 1258, 1907, 1937
LweI GCATC 5 cut(s) 88, 530, 1828, 1850, 1882
MaeI CTAG 3 cut(s) 786, 810, 1149
MaeII ACGT 6 cut(s) 95, 114, 180, 1119, 1227, 2025
MaeIII GTNAC 7 cut(s) 102, 767, 1231, 1534, 1730, 1970, 2054
MalI GATC 7 cut(s) 205, 842, 902, 1056, 1448, 1462, 1615
MboI GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
MboII GAAGA 9 cut(s) 75, 120, 175, 415, 603, 718, 1532, 1750, 1951
MflI RGATCY 1 cut(s) 1460
MlyI GAGTC 4 cut(s) 931, 1136, 1892, 1914
MmeI TCCRAC 3 cut(s) 651, 1192, 1937
Mph1103I ATGCAT 1 cut(s) 1843
MroXI GAANNNNTTC 1 cut(s) 1707
MseI TTAA 5 cut(s) 230, 342, 465, 1176, 1913
MslI CAYNNNNRTG 2 cut(s) 947, 999
MspI CCGG 2 cut(s) 1946, 2067
MspR9I CCNGG 2 cut(s) 1781, 1947
MvaI CCWGG 1 cut(s) 1781
MwoI GCNNNNNNNGC 4 cut(s) 353, 572, 647, 1085
NciI CCSGG 1 cut(s) 1947
NdeI CATATG 1 cut(s) 218
NdeII GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
NmeAIII GCCGAG 1 cut(s) 1700
NmuCI GTSAC 4 cut(s) 767, 1730, 1970, 2054
NsiI ATGCAT 1 cut(s) 1843
NspI RCATGY 1 cut(s) 1363
PagI TCATGA 2 cut(s) 262, 1140
PciI ACATGT 1 cut(s) 1359
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 539, 1329
PdmI GAANNNNTTC 1 cut(s) 1707
PfeI GAWTC 9 cut(s) 5, 66, 317, 385, 970, 1294, 1626, 1803, 2063
PflFI GACNNNGTC 1 cut(s) 921
PkrI GCNGC 4 cut(s) 1273, 1376, 1897, 1952
Ple19I CGATCG 1 cut(s) 206
PleI GAGTC 4 cut(s) 930, 1135, 1891, 1913
PpsI GAGTC 4 cut(s) 930, 1135, 1891, 1913
PscI ACATGT 1 cut(s) 1359
Psp1406I AACGTT 1 cut(s) 2025
Psp6I CCWGG 1 cut(s) 1779
PspFI CCCAGC 1 cut(s) 1571
PspGI CCWGG 1 cut(s) 1779
PstI CTGCAG 1 cut(s) 1955
PsuI RGATCY 1 cut(s) 1460
PsyI GACNNNGTC 1 cut(s) 921
PvuI CGATCG 1 cut(s) 206
RsaI GTAC 3 cut(s) 40, 1622, 1753
RsaNI GTAC 3 cut(s) 39, 1621, 1752
RseI CAYNNNNRTG 2 cut(s) 947, 999
SaqAI TTAA 5 cut(s) 230, 342, 465, 1176, 1913
SatI GCNGC 4 cut(s) 1272, 1375, 1896, 1951
Sau3AI GATC 7 cut(s) 203, 840, 900, 1054, 1446, 1460, 1613
ScaI AGTACT 1 cut(s) 1753
SchI GAGTC 4 cut(s) 931, 1136, 1892, 1914
ScrFI CCNGG 2 cut(s) 1781, 1947
SfaNI GCATC 5 cut(s) 88, 530, 1828, 1850, 1882
SfcI CTRYAG 1 cut(s) 1951
SmiMI CAYNNNNRTG 2 cut(s) 947, 999
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SsiI CCGC 1 cut(s) 1374
SspMI CTAG 3 cut(s) 786, 810, 1149
StyD4I CCNGG 2 cut(s) 1779, 1945
TaaI ACNGT 8 cut(s) 535, 637, 869, 998, 1043, 1096, 1409, 1441
TaiI ACGT 6 cut(s) 98, 117, 183, 1122, 1230, 2028
TaqI TCGA 6 cut(s) 186, 195, 495, 916, 1323, 1629
TaqII GACCGA 1 cut(s) 934
TatI WGTACW 1 cut(s) 1751
TauI GCSGC 1 cut(s) 1377
TfiI GAWTC 9 cut(s) 5, 66, 317, 385, 970, 1294, 1626, 1803, 2063
Tru1I TTAA 5 cut(s) 230, 342, 465, 1176, 1913
Tru9I TTAA 5 cut(s) 230, 342, 465, 1176, 1913
TscAI CASTG 1 cut(s) 1165
TseFI GTSAC 4 cut(s) 767, 1730, 1970, 2054
TseI GCWGC 3 cut(s) 1271, 1895, 1950
Tsp45I GTSAC 4 cut(s) 767, 1730, 1970, 2054
TspDTI ATGAA 9 cut(s) 251, 377, 513, 1286, 1395, 1515, 1716, 1779, 1934
TspGWI ACGGA 2 cut(s) 982, 1638
TspRI CASTG 1 cut(s) 1165
Tth111I GACNNNGTC 1 cut(s) 921
XapI RAATTY 6 cut(s) 478, 619, 832, 986, 1081, 1595
XceI RCATGY 1 cut(s) 1363
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmiI GTMKAC 2 cut(s) 144, 1411
XmnI GAANNNNTTC 1 cut(s) 1707
XspI CTAG 3 cut(s) 786, 810, 1149
ZrmI AGTACT 1 cut(s) 1753
Zsp2I ATGCAT 1 cut(s) 1843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.