Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016487.1

Orthogroup ID

OG0012421

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3687

Gene Structure 3686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1192 bp

atgaaactaactaaccagccaatgcctagtggcaaagcaaacatccaatctgctaacccaccatctaagcctgaaccagatgctcctcccatcattcccaaccttggtacacctcagaaacaagcagaacacaaaccaagaaagcagcaacacaagcgtggcctccaagaacacggcttgggattgcgtgaacttcttgatggagtcaaaggagaagatgctctccggtatgccaaaggcgaaagagtcgtcggagacgccgccgtcggtggagatggtggagttagccgtgaagaggacgcaggcgtggctggtccggttctgaagatacccaactgcacaagcacagtggcttccattgtagctgaagctgtttgctgggcagctcattcttcttcacgaaatgatcacgaagtgttcaagtgttgtttttttgctgaaattgctgctgagaaaaccgaagggttaactttttcattgagcgcttttggtttgaggtgtgaaatatggattgctttttggttttgggggaaatgggcaggcttaatctggaaaactacaaagacgactagtttgtctcttcgccaacctcagacagtcggaccctatgcttgggcgccttctgaattacatatggactccaccaaactattatccctcttaagaacatgcatcacttcgaagtcgctgagaccaggcaagctcatccaccaaaagatactcactcaaggcttccaatacaacaccctcttgtgcaaaaacctcatagacttctacatctcttgccatttatgcccttctgcaaagcttgttttccaatccattgagaacccatccagcatttccttgtggaattctctcatgacaggttacaccaagaacctcatgttcattgatgctcttgagctctatgaaaggttactctgctacccctatctgggtcctgatagttacacctacccaagtgttctcaaggcctgcggtgcattgggtagggtaggtcttggaaaaatgatccataaccatttgataaagactggtttcatatcagatatcgtcgtggcaagttcccttgtgggaatgtatgcgaaatgcaatgtgtttgatcctggaattcagctgtttgatgaaatgcctgaaagagatgtggcatgttggaatactgcaatttcttgttattatcaaaatgggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

397

Amino Acids

43.72

Weight (kDa)

8.44

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27110
fragaria_vesca	FvH4_3g28010
malus_domestica	MD03G1167900.v1.1
prunus_persica	Prupe.4G268300_v2.0.a1
pyrus_communis	pycom03g12310
rosa_chinensis	RchiOBHm_Chr3g0448241
rosa_laevigata	RLG00000025934
rosa_multiflora	Rmu_co8274213.1_g000001 Rmu_sc0005582.1_g000002 Rmu_sc0005969.1_g000039 Rmu_sc0005969.1_g000046 Rmu_sc0016487.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426370
rosa_rugosa	Rorug02G0609300
rosa_samantha	Rh3AG009100 Rh3BG008700 Rh3CG008800 Rh3DG009400
rosa_wichuraiana	Rw3G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	263, 574
AccB1I	GGYRCC	1 cut(s)	616
AciI	CCGC	2 cut(s)	261, 981
AclWI	GGATC	2 cut(s)	1009, 1100
AcsI	RAATTY	2 cut(s)	853, 1113
AcuI	CTGAAG	2 cut(s)	344, 387
AcyI	GRCGYC	2 cut(s)	258, 617
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	1 cut(s)	109
AfeI	AGCGCT	1 cut(s)	484
AfiI	CCNNNNNNNGG	5 cut(s)	104, 295, 612, 937, 938
AflII	CTTAAG	1 cut(s)	661
AgsI	TTSAA	1 cut(s)	421
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	694, 1108
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	7 cut(s)	365, 371, 386, 703, 808, 907, 1120
AluI	AGCT	7 cut(s)	365, 371, 386, 703, 808, 907, 1120
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	3 cut(s)	249, 582, 685
AlwI	GGATC	2 cut(s)	1009, 1100
Aor51HI	AGCGCT	1 cut(s)	484
AoxI	GGCC	2 cut(s)	160, 975
ApeKI	GCWGC	3 cut(s)	145, 383, 446
ApoI	RAATTY	2 cut(s)	853, 1113
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 556, 588
AspLEI	GCGC	2 cut(s)	485, 619
AspS9I	GGNCC	3 cut(s)	314, 602, 941
AsuII	TTCGAA	1 cut(s)	680
AvaII	GGWCC	3 cut(s)	314, 602, 941
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	3 cut(s)	157, 395, 433
BccI	CCATC	5 cut(s)	70, 98, 194, 269, 841
BceAI	ACGGC	3 cut(s)	190, 248, 273
BciT130I	CCWGG	2 cut(s)	696, 1110
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	249, 582, 685
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	2 cut(s)	27, 570
BfoI	RGCGCY	2 cut(s)	486, 620
BfrI	CTTAAG	1 cut(s)	661
BisI	GCNGC	4 cut(s)	146, 261, 384, 447
BlsI	GCNGC	4 cut(s)	147, 262, 385, 448
Bme1390I	CCNGG	2 cut(s)	696, 1110
Bme18I	GGWCC	3 cut(s)	314, 602, 941
BmgT120I	GGNCC	3 cut(s)	314, 602, 941
BmiI	GGNNCC	3 cut(s)	604, 618, 942
BmrFI	CCNGG	2 cut(s)	696, 1110
BmsI	GCATC	4 cut(s)	70, 208, 681, 886
Bpu14I	TTCGAA	1 cut(s)	680
BpuEI	CTTGAG	3 cut(s)	711, 923, 956
BsaHI	GRCGYC	2 cut(s)	258, 617
BsaI	GGTCTC	1 cut(s)	685
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	2 cut(s)	225, 316
Bsc4I	CCNNNNNNNGG	5 cut(s)	104, 295, 612, 937, 938
Bse1I	ACTGG	1 cut(s)	1042
Bse3DI	GCAATG	1 cut(s)	1102
BseBI	CCWGG	2 cut(s)	696, 1110
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	3 cut(s)	42, 705, 833
BseLI	CCNNNNNNNGG	5 cut(s)	104, 295, 612, 937, 938
BseMI	GCAATG	1 cut(s)	1102
BseMII	CTCAG	4 cut(s)	128, 441, 605, 680
BseNI	ACTGG	1 cut(s)	1042
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	157, 395, 433
BseYI	CCCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	162, 977
BshNI	GGYRCC	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	226, 317
BslI	CCNNNNNNNGG	5 cut(s)	104, 295, 612, 937, 938
BsmAI	GTCTC	3 cut(s)	249, 582, 685
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	162, 977
Bso31I	GGTCTC	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	909
Bsp143I	GATC	3 cut(s)	406, 1014, 1105
BspACI	CCGC	2 cut(s)	261, 981
BspANI	GGCC	2 cut(s)	162, 977
BspCNI	CTCAG	4 cut(s)	127, 442, 604, 681
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	3 cut(s)	604, 618, 942
BspPI	GGATC	2 cut(s)	1009, 1100
BspT104I	TTCGAA	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	616
BspTI	CTTAAG	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	1102
BsrI	ACTGG	1 cut(s)	1042
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	406, 1014, 1105
BssNI	GRCGYC	2 cut(s)	258, 617
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	696, 1110
Bst4CI	ACNGT	2 cut(s)	349, 598
Bst6I	CTCTTC	2 cut(s)	288, 585
BstACI	GRCGYC	2 cut(s)	258, 617
BstAFI	CTTAAG	1 cut(s)	661
BstBI	TTCGAA	1 cut(s)	680
BstC8I	GCNNGC	4 cut(s)	304, 541, 701, 979
BstDEI	CTNAG	5 cut(s)	66, 114, 450, 591, 689
BstF5I	GGATG	3 cut(s)	42, 705, 833
BstH2I	RGCGCY	2 cut(s)	486, 620
BstHHI	GCGC	2 cut(s)	485, 619
BstKTI	GATC	3 cut(s)	409, 1017, 1108
BstMAI	GTCTC	3 cut(s)	249, 582, 685
BstMBI	GATC	3 cut(s)	406, 1014, 1105
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 308, 443, 792, 983
BstNI	CCWGG	2 cut(s)	696, 1110
BstNSI	RCATGY	2 cut(s)	672, 1155
BstSCI	CCNGG	2 cut(s)	694, 1108
BstV1I	GCAGC	3 cut(s)	157, 395, 433
BsuRI	GGCC	2 cut(s)	162, 977
BtsCI	GGATG	3 cut(s)	42, 705, 833
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	4 cut(s)	304, 541, 701, 979
CciI	TCATGA	1 cut(s)	861
CfoI	GCGC	2 cut(s)	485, 619
Cfr13I	GGNCC	3 cut(s)	314, 602, 941
CseI	GACGC	2 cut(s)	266, 308
Csp6I	GTAC	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	4 cut(s)	669, 862, 886, 1152
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	5 cut(s)	66, 114, 450, 591, 689
DinI	GGCGCC	1 cut(s)	618
DpnI	GATC	3 cut(s)	408, 1016, 1107
DpnII	GATC	3 cut(s)	406, 1014, 1105
DraIII	CACNNNGTG	1 cut(s)	415
DrdI	GACNNNNNNGTC	2 cut(s)	263, 574
DseDI	GACNNNNNNGTC	2 cut(s)	263, 574
Eam1104I	CTCTTC	2 cut(s)	288, 585
EarI	CTCTTC	2 cut(s)	288, 585
Ecl136II	GAGCTC	1 cut(s)	907
Eco130I	CCWWGG	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	977
Eco24I	GRGCYC	1 cut(s)	909
Eco31I	GGTCTC	1 cut(s)	685
Eco32I	GATATC	1 cut(s)	1054
Eco47I	GGWCC	3 cut(s)	314, 602, 941
Eco47III	AGCGCT	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	907
Eco57I	CTGAAG	2 cut(s)	344, 387
EcoICRI	GAGCTC	1 cut(s)	907
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRI	GAATTC	2 cut(s)	853, 1113
EcoRII	CCWGG	2 cut(s)	694, 1108
EcoRV	GATATC	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	909
EgeI	GGCGCC	1 cut(s)	618
EheI	GGCGCC	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	4 cut(s)	672, 865, 889, 1155
FatI	CATG	4 cut(s)	668, 861, 885, 1151
FauNDI	CATATG	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	146, 261, 384, 447
FokI	GGATG	3 cut(s)	29, 692, 820
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	4 cut(s)	146, 261, 384, 447
FspBI	CTAG	2 cut(s)	27, 570
GlaI	GCGC	2 cut(s)	484, 618
GluI	GCNGC	4 cut(s)	146, 261, 384, 447
GsaI	CCCAGC	1 cut(s)	382
HaeII	RGCGCY	2 cut(s)	486, 620
HaeIII	GGCC	2 cut(s)	162, 977
HapII	CCGG	2 cut(s)	226, 317
HgaI	GACGC	2 cut(s)	266, 308
HhaI	GCGC	2 cut(s)	485, 619
Hin1I	GRCGYC	2 cut(s)	258, 617
Hin1II	CATG	4 cut(s)	672, 865, 889, 1155
Hin6I	GCGC	2 cut(s)	483, 617
HinP1I	GCGC	2 cut(s)	483, 617
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	3 cut(s)	204, 246, 638
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	2 cut(s)	226, 317
Hpy166II	GTNNAC	3 cut(s)	110, 191, 468
Hpy188I	TCNGA	7 cut(s)	117, 254, 324, 594, 602, 625, 1051
Hpy188III	TCNNGA	7 cut(s)	197, 399, 410, 550, 862, 902, 944
Hpy8I	GTNNAC	3 cut(s)	110, 191, 468
Hpy99I	CGWCG	3 cut(s)	254, 269, 1061
HpyAV	CCTTC	3 cut(s)	455, 630, 807
HpyCH4III	ACNGT	2 cut(s)	349, 598
HpyCH4V	TGCA	7 cut(s)	339, 672, 756, 803, 986, 1095, 1166
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 308, 443, 792, 983
HpyF3I	CTNAG	5 cut(s)	66, 114, 450, 591, 689
Hsp92I	GRCGYC	2 cut(s)	258, 617
Hsp92II	CATG	4 cut(s)	672, 865, 889, 1155
HspAI	GCGC	2 cut(s)	483, 617
KasI	GGCGCC	1 cut(s)	616
Ksp22I	TGATCA	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	406, 1014, 1105
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	3 cut(s)	157, 395, 433
LweI	GCATC	4 cut(s)	70, 208, 681, 886
MaeI	CTAG	2 cut(s)	27, 570
MaeIII	GTNAC	3 cut(s)	869, 918, 950
MalI	GATC	3 cut(s)	408, 1016, 1107
MboI	GATC	3 cut(s)	406, 1014, 1105
MboII	GAAGA	6 cut(s)	227, 305, 337, 384, 387, 572
MhlI	GDGCHC	1 cut(s)	909
MluCI	AATT	5 cut(s)	441, 626, 853, 1113, 1167
Mly113I	GGCGCC	1 cut(s)	617
MlyI	GAGTC	3 cut(s)	213, 255, 632
MmeI	TCCRAC	3 cut(s)	232, 580, 1136
Mph1103I	ATGCAT	1 cut(s)	674
MseI	TTAA	3 cut(s)	467, 545, 662
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	1120
MspCI	CTTAAG	1 cut(s)	661
MspI	CCGG	2 cut(s)	226, 317
MspR9I	CCNGG	2 cut(s)	696, 1110
MvaI	CCWGG	2 cut(s)	696, 1110
MwoI	GCNNNNNNNGC	5 cut(s)	154, 308, 443, 792, 983
NarI	GGCGCC	1 cut(s)	617
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	3 cut(s)	406, 1014, 1105
NlaIII	CATG	4 cut(s)	672, 865, 889, 1155
NlaIV	GGNNCC	3 cut(s)	604, 618, 942
NsiI	ATGCAT	1 cut(s)	674
NspI	RCATGY	2 cut(s)	672, 1155
NspV	TTCGAA	1 cut(s)	680
OliI	CACNNNNGTG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	977
PfoI	TCCNGGA	1 cut(s)	1108
PkrI	GCNGC	4 cut(s)	147, 262, 385, 448
PleI	GAGTC	3 cut(s)	212, 254, 632
PluTI	GGCGCC	1 cut(s)	620
PpsI	GAGTC	3 cut(s)	212, 254, 632
PpuMI	RGGWCCY	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	694, 1108
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	2 cut(s)	694, 1108
PspN4I	GGNNCC	3 cut(s)	604, 618, 942
PspPI	GGNCC	3 cut(s)	314, 602, 941
PspPPI	RGGWCCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	1120
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	909
SaqAI	TTAA	3 cut(s)	467, 545, 662
SatI	GCNGC	4 cut(s)	146, 261, 384, 447
Sau3AI	GATC	3 cut(s)	406, 1014, 1105
Sau96I	GGNCC	3 cut(s)	314, 602, 941
SchI	GAGTC	3 cut(s)	213, 255, 632
ScrFI	CCNGG	2 cut(s)	696, 1110
SduI	GDGCHC	1 cut(s)	909
SfaNI	GCATC	4 cut(s)	70, 208, 681, 886
SfoI	GGCGCC	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	680
SinI	GGWCC	3 cut(s)	314, 602, 941
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	4 cut(s)	661, 726, 902, 971
SmoI	CTYRAG	4 cut(s)	661, 726, 902, 971
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	5 cut(s)	441, 626, 853, 1113, 1167
SseBI	AGGCCT	1 cut(s)	977
SsiI	CCGC	2 cut(s)	261, 981
SspDI	GGCGCC	1 cut(s)	616
SspMI	CTAG	2 cut(s)	27, 570
SstI	GAGCTC	1 cut(s)	909
StuI	AGGCCT	1 cut(s)	977
StyD4I	CCNGG	2 cut(s)	694, 1108
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	349, 598
TaqI	TCGA	1 cut(s)	680
TasI	AATT	5 cut(s)	441, 626, 853, 1113, 1167
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	467, 545, 662
Tru9I	TTAA	3 cut(s)	467, 545, 662
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	3 cut(s)	145, 383, 446
TspDTI	ATGAA	6 cut(s)	17, 465, 880, 927, 1033, 1143
TspRI	CASTG	1 cut(s)	354
Vha464I	CTTAAG	1 cut(s)	661
VpaK11BI	GGWCC	3 cut(s)	314, 602, 941
XapI	RAATTY	2 cut(s)	853, 1113
XceI	RCATGY	2 cut(s)	672, 1155
XspI	CTAG	2 cut(s)	27, 570
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.