Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012421

Physical Location & Seq

Genomic Coordinates Forward (+)

20317249 .. 20320369

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G268300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGACGCCGCAAAATTATTAAGTCTCTTAAGGACATGTATCATTTCCAAGTCGCTGAAGCAAGGCAAGCTCATCCACCAAAAGATGCTCACTCTGGGCTTACAGAACGACCCTGCCCTCTGCAAAAACCTCATAAACTTTTACTTCTCTTGCCATTTTTGTGACAGTGCAAAGCTTGTTTTCCAATCCATCGAAAACCCATCCAGTATTTCCTTGTGGAATGGCGTCATGACAGGTTTCACGAAGAACCACATGTTCGTTGAAGCTCTTGAGCTCTTTGAAAGTTTGCTGCGTTACCCTTATATTGGTCCTGATAGTTACACTTATCCAAGTGTTCTTAAGGCCTGTGGTGCATTGGGTCAAGTTGGTTTTGGGAAAATGATCCATAACCATTTGATAAAGACTGGTTTCGTATCAGATATTGTGGTTGCCAGCTCTCTTGTGTGCATGTATGCTAAATGCAACGTGTTTGACTGTGCTATACGGCTATTTGACGAAATGCCTGAGAGAGATGTGGCATGTTGGAATACTGTAATTTCTTGTTATTATCAAGATGGGCAAGCTCAAAAGGCAATGGAATTGTTTGAAAAGATGAGGAACTCTGGCTTTACTCCTAATTCAGTAACGCTGACAACTGTTATTTCATCATGTGCAAGACTTTTTGATTTGGAGAGAGGTATGAAGATTCACAAGGAGTTGATAAAAGATCAGTTGGTTTTGGATTCTTTTGTTACTTCAGCTCTTGTGGACATGTATGGAAAATGTGGATGTTTAGATATGGCTAAAGAGGTTTTTGAGCAAATCCCAATAAAGAATGTGGTTGCTTGGAATTCTATGATCGCAGCATACAGTGTAACTGGCGACAGTATATCTTGTATCCAATTTTTTAGAAGGATGAATCGTGAAGGAACGAGTCCCACTTTAACTACTTTTAGCAGCATATTGTTGGCCTGTTCAAGGTCAGCCCAACTGCTTCACGGAAAATTTATACATGCATTCATGATAAGAAACATTATAGAGGCTGATATCTACATTTACAGCTCACTTATTGATCTCTATTTCGTGTCTGGAAGTGTGTCATCAGCTAAAAATGTCTTTGAAAAGATGCCTAAGACAAATACAGTTTCCTGGAATGTTATGATTTCTGGATATGTGAAAGTGGGTGATTATTTTGGGGCTCTGGCCATATATGATGACATGAAAGAAGCTGGTGTAAGGCCAAATGCCATCACAGTAACTAGTATCTTATCGGCTTGTTCACAACTAGCAGCACTGGAAAAGGGTAAGGAGATTCACAGAACTGTAATTGATAGTGAGTTTGAAACCAATGAAATAATGATGGGGGCTCTTCTTGACATGTATGCTAAATGTGGTGCGGTGGATGAAGCACTTAATGTTTTTAATAGATTACCAAATAGAGATCCTGTTTCATGGACCTCCATGATCACTGCTTATGGATCTCATGGTCAAGCTTTAGAAGCTTTGAAGCTTTTTGGTGAAATGCAGCAATCCAATGCAAAACCTGATGGAGTTACTCTTCTTGCAGTTCTATCTGCTTGTAGCCATGTGGGGCTAGTTGATGAAGGTTGTCACTTTTTCAATCAAATGATCACCAACTATGGAATTAAACCTAGAATAGAACATTACTCTTGCTTGATAGATCTTCTTGGACGTGCTGGAAGATTGAATGAAGCTTACGAAATTCTCCAAAGAACTTCAGAAATTAGGGAGGATGTTGACTTGTTAAGCACACTATTTTCCGCATGTCGTTTGCACAGAAATCTAGATTTGGGTGTGAAAATTGCAAGATTGCTAATTGAGAAGAATCCCGATGATCATTCAACTTATATCATGTTATCAAATACTTATGCTTCTGTCAAAAAATGGGATGAGGTAAAGAAGGTGAGATTGAAGATGAAAGAATTGGGATTAAGGAAAAATCCGGGGTGTAGCTGGATTGAGATTAACAAGAAGATCCACCCCTTCTTTGTCGGAGACAAGTCCCACCCACAATCAGAAATGGTATGTGAATGTCTCACATTTCTTGCCAGTCACATGGAGAGAGATGAGCTGCTTTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

695

Amino Acids

77.76

Weight (kDa)

6.8

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27110
fragaria_vesca	FvH4_3g28010
malus_domestica	MD03G1167900.v1.1
prunus_persica	Prupe.4G268300_v2.0.a1
pyrus_communis	pycom03g12310
rosa_chinensis	RchiOBHm_Chr3g0448241
rosa_laevigata	RLG00000025934
rosa_multiflora	Rmu_co8274213.1_g000001 Rmu_sc0005582.1_g000002 Rmu_sc0005969.1_g000039 Rmu_sc0005969.1_g000046 Rmu_sc0016487.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426370
rosa_rugosa	Rorug02G0609300
rosa_samantha	Rh3AG009100 Rh3BG008700 Rh3CG008800 Rh3DG009400
rosa_wichuraiana	Rw3G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 1376, 1761
AclWI	GGATC	4 cut(s)	376, 1415, 1465, 1969
AcoI	YGGCCR	1 cut(s)	1182
AcsI	RAATTY	3 cut(s)	829, 983, 1701
AcuI	CTGAAG	3 cut(s)	77, 720, 1701
AcyI	GRCGYC	2 cut(s)	6, 225
AfiI	CCNNNNNNNGG	2 cut(s)	305, 957
AflII	CTTAAG	2 cut(s)	28, 338
AflIII	ACRYGT	5 cut(s)	35, 252, 465, 750, 1356
AhlI	ACTAGT	1 cut(s)	1238
AjiI	CACGTC	1 cut(s)	1673
AjnI	CCWGG	1 cut(s)	1127
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	29, 1989, 2039
AlwI	GGATC	4 cut(s)	376, 1415, 1465, 1969
AoxI	GGCC	4 cut(s)	342, 948, 1182, 1217
ApeKI	GCWGC	6 cut(s)	289, 842, 936, 1268, 1504, 2071
ApoI	RAATTY	3 cut(s)	829, 983, 1701
AspS9I	GGNCC	2 cut(s)	308, 1434
AsuC2I	CCSGG	1 cut(s)	1944
AsuHPI	GGTGA	4 cut(s)	1175, 1508, 1603, 1915
AvaII	GGWCC	2 cut(s)	308, 1434
BalI	TGGCCA	1 cut(s)	1184
BanII	GRGCYC	3 cut(s)	276, 1180, 1348
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	6 cut(s)	276, 854, 948, 1280, 1516, 2058
BccI	CCATC	6 cut(s)	197, 208, 548, 1235, 1333, 1520
BceAI	ACGGC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	1129
BciVI	GTATCC	1 cut(s)	887
BclI	TGATCA	3 cut(s)	1443, 1608, 1834
BcnI	CCSGG	1 cut(s)	1944
BcoDI	GTCTC	3 cut(s)	29, 1989, 2039
BcuI	ACTAGT	1 cut(s)	1238
BfaI	CTAG	5 cut(s)	1239, 1265, 1574, 1632, 1784
BfrI	CTTAAG	2 cut(s)	28, 338
BfuI	GTATCC	1 cut(s)	887
BglII	AGATCT	1 cut(s)	1660
BisI	GCNGC	7 cut(s)	9, 290, 843, 937, 1269, 1505, 2072
BlsI	GCNGC	7 cut(s)	10, 291, 844, 938, 1270, 1506, 2073
Bme1390I	CCNGG	2 cut(s)	1129, 1944
Bme18I	GGWCC	2 cut(s)	308, 1434
BmgBI	CACGTC	1 cut(s)	1673
BmgT120I	GGNCC	2 cut(s)	308, 1434
BmrFI	CCNGG	2 cut(s)	1129, 1944
BmsI	GCATC	2 cut(s)	75, 1095
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	1944
BsaHI	GRCGYC	2 cut(s)	6, 225
BsaJI	CCNNGG	1 cut(s)	1943
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 957
Bse1I	ACTGG	5 cut(s)	204, 409, 862, 1278, 2049
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	1129
BseDI	CCNNGG	1 cut(s)	1943
BseGI	GGATG	7 cut(s)	72, 200, 773, 900, 1387, 1738, 1894
BseLI	CCNNNNNNNGG	2 cut(s)	305, 957
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	5 cut(s)	204, 409, 862, 1278, 2049
BseXI	GCAGC	6 cut(s)	276, 854, 948, 1280, 1516, 2058
BshFI	GGCC	4 cut(s)	344, 950, 1184, 1219
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	1943
BslFI	GGGAC	2 cut(s)	900, 1987
BslI	CCNNNNNNNGG	2 cut(s)	305, 957
BsmAI	GTCTC	3 cut(s)	29, 1989, 2039
BsmFI	GGGAC	2 cut(s)	900, 1987
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	4 cut(s)	344, 950, 1184, 1219
Bsp1286I	GDGCHC	3 cut(s)	276, 1180, 1348
BspACI	CCGC	3 cut(s)	9, 1376, 1761
BspANI	GGCC	4 cut(s)	344, 950, 1184, 1219
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	2 cut(s)	228, 999
BspPI	GGATC	4 cut(s)	376, 1415, 1465, 1969
BspQI	GCTCTTC	1 cut(s)	1353
BspTI	CTTAAG	2 cut(s)	28, 338
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	5 cut(s)	204, 409, 862, 1278, 2049
BssECI	CCNNGG	1 cut(s)	1943
BssNI	GRCGYC	2 cut(s)	6, 225
Bst2UI	CCWGG	1 cut(s)	1129
Bst4CI	ACNGT	9 cut(s)	167, 476, 532, 637, 851, 866, 1123, 1234, 1303
Bst6I	CTCTTC	2 cut(s)	1353, 1542
BstACI	GRCGYC	2 cut(s)	6, 225
BstAFI	CTTAAG	2 cut(s)	28, 338
BstC8I	GCNNGC	3 cut(s)	68, 433, 561
BstDEI	CTNAG	2 cut(s)	504, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	955
BstF5I	GGATG	7 cut(s)	72, 200, 773, 900, 1387, 1738, 1894
BstMAI	GTCTC	3 cut(s)	29, 1989, 2039
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 350, 569, 1478
BstNI	CCWGG	1 cut(s)	1129
BstNSI	RCATGY	8 cut(s)	39, 256, 451, 522, 754, 995, 1360, 1767
BstSCI	CCNGG	2 cut(s)	1127, 1942
BstV1I	GCAGC	6 cut(s)	276, 854, 948, 1280, 1516, 2058
BstX2I	RGATCY	4 cut(s)	1420, 1457, 1660, 1974
BstXI	CCANNNNNNTGG	1 cut(s)	2056
BstYI	RGATCY	4 cut(s)	1420, 1457, 1660, 1974
BsuI	GTATCC	1 cut(s)	887
BsuRI	GGCC	4 cut(s)	344, 950, 1184, 1219
BtrI	CACGTC	1 cut(s)	1673
BtsCI	GGATG	7 cut(s)	72, 200, 773, 900, 1387, 1738, 1894
BtsI	GCAGTG	1 cut(s)	1446
BtsIMutI	CAGTG	4 cut(s)	172, 856, 1271, 1446
Cac8I	GCNNGC	3 cut(s)	68, 433, 561
CciI	TCATGA	2 cut(s)	228, 999
Cfr13I	GGNCC	2 cut(s)	308, 1434
CseI	GACGC	2 cut(s)	14, 214
DdeI	CTNAG	2 cut(s)	504, 1110
EaeI	YGGCCR	1 cut(s)	1182
Eam1104I	CTCTTC	2 cut(s)	1353, 1542
EarI	CTCTTC	2 cut(s)	1353, 1542
Ecl136II	GAGCTC	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	344
Eco24I	GRGCYC	3 cut(s)	276, 1180, 1348
Eco32I	GATATC	1 cut(s)	1027
Eco47I	GGWCC	2 cut(s)	308, 1434
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	3 cut(s)	77, 720, 1701
EcoICRI	GAGCTC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	955
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	1127
EcoRV	GATATC	1 cut(s)	1027
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	3 cut(s)	276, 1180, 1348
FaqI	GGGAC	2 cut(s)	900, 1987
FbaI	TGATCA	3 cut(s)	1443, 1608, 1834
Fnu4HI	GCNGC	7 cut(s)	9, 290, 843, 937, 1269, 1505, 2072
FokI	GGATG	7 cut(s)	59, 187, 780, 907, 1394, 1745, 1901
FriOI	GRGCYC	3 cut(s)	276, 1180, 1348
Fsp4HI	GCNGC	7 cut(s)	9, 290, 843, 937, 1269, 1505, 2072
FspBI	CTAG	5 cut(s)	1239, 1265, 1574, 1632, 1784
GluI	GCNGC	7 cut(s)	9, 290, 843, 937, 1269, 1505, 2072
HaeIII	GGCC	4 cut(s)	344, 950, 1184, 1219
HapII	CCGG	1 cut(s)	1943
HgaI	GACGC	2 cut(s)	14, 214
Hin1I	GRCGYC	2 cut(s)	6, 225
HincII	GTYRAC	1 cut(s)	1738
HindII	GTYRAC	1 cut(s)	1738
HindIII	AAGCTT	5 cut(s)	173, 1470, 1479, 1487, 1692
HinfI	GANTC	6 cut(s)	685, 722, 898, 913, 1291, 1825
HpaII	CCGG	1 cut(s)	1943
HphI	GGTGA	4 cut(s)	1175, 1508, 1603, 1915
Hpy166II	GTNNAC	3 cut(s)	748, 1259, 1738
Hpy188I	TCNGA	4 cut(s)	418, 1720, 1994, 2017
Hpy8I	GTNNAC	3 cut(s)	748, 1259, 1738
HpyAV	CCTTC	5 cut(s)	885, 899, 1577, 1894, 1993
HpyCH4III	ACNGT	9 cut(s)	167, 476, 532, 637, 851, 866, 1123, 1234, 1303
HpyCH4IV	ACGT	2 cut(s)	465, 1672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 350, 569, 1478
HpyF3I	CTNAG	2 cut(s)	504, 1110
HpySE526I	ACGT	2 cut(s)	465, 1672
Hsp92I	GRCGYC	2 cut(s)	6, 225
Ksp22I	TGATCA	3 cut(s)	1443, 1608, 1834
LguI	GCTCTTC	1 cut(s)	1353
Lsp1109I	GCAGC	6 cut(s)	276, 854, 948, 1280, 1516, 2058
LweI	GCATC	2 cut(s)	75, 1095
MaeI	CTAG	5 cut(s)	1239, 1265, 1574, 1632, 1784
MaeII	ACGT	2 cut(s)	465, 1672
MboII	GAAGA	9 cut(s)	256, 694, 1340, 1529, 1655, 1692, 1834, 1924, 1984
MflI	RGATCY	4 cut(s)	1420, 1457, 1660, 1974
MhlI	GDGCHC	3 cut(s)	276, 1180, 1348
MlsI	TGGCCA	1 cut(s)	1184
MluNI	TGGCCA	1 cut(s)	1184
MlyI	GAGTC	1 cut(s)	922
MmeI	TCCRAC	2 cut(s)	503, 1972
MnlI	CCTC	9 cut(s)	128, 140, 588, 668, 781, 1012, 1447, 1723, 1885
Mox20I	TGGCCA	1 cut(s)	1184
Mph1103I	ATGCAT	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	1184
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	1184
MspCI	CTTAAG	2 cut(s)	28, 338
MspI	CCGG	1 cut(s)	1943
MspR9I	CCNGG	2 cut(s)	1129, 1944
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	4 cut(s)	67, 350, 569, 1478
NciI	CCSGG	1 cut(s)	1944
NmuCI	GTSAC	3 cut(s)	161, 1589, 2051
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	8 cut(s)	39, 256, 451, 522, 754, 995, 1360, 1767
PagI	TCATGA	2 cut(s)	228, 999
PceI	AGGCCT	1 cut(s)	344
PciI	ACATGT	4 cut(s)	35, 252, 750, 1356
PciSI	GCTCTTC	1 cut(s)	1353
PctI	GAATGC	1 cut(s)	995
PfeI	GAWTC	5 cut(s)	685, 722, 898, 1291, 1825
PfoI	TCCNGGA	1 cut(s)	1127
PkrI	GCNGC	7 cut(s)	10, 291, 844, 938, 1270, 1506, 2073
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
PscI	ACATGT	4 cut(s)	35, 252, 750, 1356
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	1127
PspGI	CCWGG	1 cut(s)	1127
PspPI	GGNCC	2 cut(s)	308, 1434
PsuI	RGATCY	4 cut(s)	1420, 1457, 1660, 1974
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	1353
SatI	GCNGC	7 cut(s)	9, 290, 843, 937, 1269, 1505, 2072
Sau96I	GGNCC	2 cut(s)	308, 1434
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	2 cut(s)	1129, 1944
SduI	GDGCHC	3 cut(s)	276, 1180, 1348
SfaNI	GCATC	2 cut(s)	75, 1095
SinI	GGWCC	2 cut(s)	308, 1434
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	3 cut(s)	28, 269, 338
SmoI	CTYRAG	3 cut(s)	28, 269, 338
SpeI	ACTAGT	1 cut(s)	1238
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	3 cut(s)	9, 1376, 1761
SspMI	CTAG	5 cut(s)	1239, 1265, 1574, 1632, 1784
SstI	GAGCTC	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	1127, 1942
TaaI	ACNGT	9 cut(s)	167, 476, 532, 637, 851, 866, 1123, 1234, 1303
TaiI	ACGT	2 cut(s)	468, 1675
TaqI	TCGA	1 cut(s)	192
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	5 cut(s)	685, 722, 898, 1291, 1825
TscAI	CASTG	4 cut(s)	172, 856, 1278, 1453
TseFI	GTSAC	3 cut(s)	161, 1589, 2051
TseI	GCWGC	6 cut(s)	289, 842, 936, 1268, 1504, 2071
Tsp45I	GTSAC	3 cut(s)	161, 1589, 2051
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	4 cut(s)	172, 856, 1278, 1453
Vha464I	CTTAAG	2 cut(s)	28, 338
VpaK11BI	GGWCC	2 cut(s)	308, 1434
XagI	CCTNNNNNAGG	1 cut(s)	955
XapI	RAATTY	3 cut(s)	829, 983, 1701
XbaI	TCTAGA	1 cut(s)	1783
XceI	RCATGY	8 cut(s)	39, 256, 451, 522, 754, 995, 1360, 1767
XspI	CTAG	5 cut(s)	1239, 1265, 1574, 1632, 1784
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.