MD03G1167900.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
22456558 .. 22461697
5140 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1167900.v1.1.491

Sequence Viewer

Length: 2100 bp
ATGGACACCACAAAACTATTGTGTCTCTTAAGAATGTGTATTAGTTCCAAGTTGCTGAAGCAAGGCAAGCTCGTCCACCAAAAGATTCTCACTCTAGGCTTACAGAATGACCTTGCTCTTTGCAAAAACCTGATAGACTTTTACTTCTCTTGCCATTTTTATGACTCTGCAAAGCTTGTTTTCCAATCCATTGAAAACCCATCCAGTATTTCCCTGTGGAATGGCCTCATGACAGCTTATACCAAGAACTTCATGTTCAACGAAGCTCTTGAGCTCTTTGGCAGTTTGCTGCGCTACCCTTATCTTTGTCCTGATAGTTACACTTATCCAAGTGTCCTTAAGGGCTGTGGTGCATTGGGTGAAGTTAGTTTGGGAAAAATGATCCATAACCATTTGATAAAGATTGGTTTCGTATCAGATATTGTTGTTGCCAGCTCTCTTGTGTGCATGTATGCTAAATGCAACATTTTTGAGTGTGCAATACAGCTGTTTGATGAAATGCCCGAGAGAGATGTGGCATGTTGGAATACTGTAATTTCTTGTTATTATCAAGATGGGCAAGCTCGTAAGGCAATAGACTTGTATGAAAAGATGAGGAATTCTGGATTTATGCCCAATTCAGTAACCCTTACAACTGTTATTTCATCGTGTGCAAGAATTTCAGATTTAGAGAGAGGTATGGAGATTCACAAGGAGTTAATAAAAAGTCGCTTGGTTTTGGATTCCTTTGTTTGTTCTGCTCTTGTGGATATGTATGGAAAATGCGGATGTTTAGATATGGCAAAACAGGTTTTTGAGCAAATCCCAATAAAGAATGTAATTTCTTGGAATTCTATGATCACAGCATACAGTGTATCAGGTGACAGTAGATCCTGTATCCAACTTTTTAGAAGGATGAATGATGAAGGAACGAGTCCCACGTTAACTACTTTTAGTAGCATACTGTTGGCCTGTTCAAGGTCAGCCCAACTACAGCACGGAAAATTCATACATGCGTTTATTATAAGAAACATTATTGAGGCTGATATCTACATTTACAGCTCGCTCCTAGATCTCTACTTCAAGTGTGGAAGTGTCTCATCAGCTAAAATTGTCTTTGATAAGATGCCGAAGACAAACGCAGCTTCTTGGAATGTTATGATTTCTGGATATGTGAAAGTGGGTGATTATTTTGGGGCTCTGGCCATGTATGATGACATGAAAGTAGCTGGTGTAAGGCCAAATGCCATCACAGTAACTAGTATCTTATCAGCTTGTTCGCAACTTGCAGCACTGGAAAAGGGTAAGGAGATTCACAGAACTCTCATTGATAGTGAGTTGGAAACCAACGAAATAGTGATGGGGGCTCTCCTTGATATGTATGCTAAATGCGGTGTGGTGGATGAAGCACTTTATGTTTTTAATAGATTACCAGATAGAGATCTTGTGTCATGGACCTCCATGATCACTGCATACGGAGCTCATGGTCAAGCTTTAGAAGCTTTAAAGCTTTTTGGTGAAATGCAGCAGTCCTATGCAAAGCCTGATGGAGTTACTCTTCTTGCGGTTCTATCTGCTTGTAGCCACGTGGGGCTAGTTGACGAAGGTTGTCACTATTTCAGTCAGATGATCACTGATTATGGAATTAAACCTAGAGTAGAACACTACTCTTGTTTGATGGATCTTCTTGGACGTGCTGGAAGATTGGATGGAGCATATCAAATTTTGCAAAGAACTCCGGAAATTAGGGAGGATGTTGACTTGTTAAGCACACTATTTTCTGCTTGTTGTTTGCACAAGGATCTAGATTTGGGTGTGAAAATCGCAGGGTTGTTAATGGAGAAGAATCCCGATGATCCTTCAACTTATATTATGTTATCAAATATTTATGCTTCTGTAAAGAAATGGGATGAAGTGCGGAAGGTGAGATTAAAGATGAAAGAATTAGGATTAAGGAAATATCCGGGCTGTAGCTGGATTGAGATTAACAAGAGGATCCAGCCTTTCTTTGTTGAAGACAAGTCCCACTCACAATCAGAAATGGTATATGAATGTCTCGCAAGTCTTGCCAGTCACATGGAGAGAGATGAGTTGTTTCCAAATAGAGCAGCAGATATATGA

Protein Analysis

700

Amino Acids

78.42

Weight (kDa)

6.23

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 170 - 219 7.3e-14 PPR repeat family
PPR PF01535 174 - 203 6.7e-07 PPR repeat
PPR_long PF17177 210 - 375 2.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 271 - 319 3.4e-09 PPR repeat family
PPR_3 PF13812 272 - 318 3.5e-07 Pentatricopeptide repeat domain
PPR PF01535 274 - 303 7e-06 PPR repeat
PPR_2 PF13041 373 - 420 1.1e-11 PPR repeat family
PPR PF01535 376 - 405 5.6e-07 PPR repeat
PPR_2 PF13041 474 - 521 3e-08 PPR repeat family
PPR PF01535 476 - 503 2e-07 PPR repeat
E_motif PF20431 592 - 654 6.5e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AccIII TCCGGA 1 cut(s) 1717
AciI CCGC 4 cut(s) 765, 1371, 1544, 1897
AclWI GGATC 7 cut(s) 376, 864, 1668, 1788, 1829, 1969, 1982
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 5 cut(s) 598, 657, 829, 983, 1701
AcuI CTGAAG 1 cut(s) 77
AcvI CACGTG 1 cut(s) 1567
AfiI CCNNNNNNNGG 1 cut(s) 957
AflII CTTAAG 2 cut(s) 28, 338
AgsI TTSAA 6 cut(s) 194, 259, 957, 1063, 1842, 1994
AhlI ACTAGT 1 cut(s) 1238
AjiI CACGTC 1 cut(s) 1673
Alw21I GWGCWC 2 cut(s) 276, 1462
Alw26I GTCTC 3 cut(s) 29, 1081, 2039
AlwI GGATC 7 cut(s) 376, 864, 1668, 1788, 1829, 1969, 1982
Ama87I CYCGRG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 1717
AoxI GGCC 4 cut(s) 223, 948, 1182, 1217
ApeKI GCWGC 5 cut(s) 289, 1121, 1268, 1504, 2087
ApoI RAATTY 5 cut(s) 598, 657, 829, 983, 1701
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 1434
AsuC2I CCSGG 1 cut(s) 1944
AsuHPI GGTGA 5 cut(s) 371, 872, 1175, 1508, 1915
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 1 cut(s) 1434
BalI TGGCCA 1 cut(s) 1184
BamHI GGATCC 1 cut(s) 1974
BanII GRGCYC 4 cut(s) 276, 1180, 1348, 1462
BbrPI CACGTG 1 cut(s) 1567
BbsI GAAGAC 2 cut(s) 1118, 2001
Bbv12I GWGCWC 2 cut(s) 276, 1462
BbvI GCAGC 4 cut(s) 276, 1133, 1280, 1516
BccI CCATC 7 cut(s) 208, 548, 1235, 1333, 1520, 1651, 1682
BciVI GTATCC 1 cut(s) 887
BclI TGATCA 3 cut(s) 837, 1443, 1608
BcnI CCSGG 1 cut(s) 1944
BcoDI GTCTC 3 cut(s) 29, 1081, 2039
BcuI ACTAGT 1 cut(s) 1238
BfaI CTAG 6 cut(s) 95, 1049, 1239, 1574, 1632, 1784
BfmI CTRYAG 2 cut(s) 971, 1948
BfrI CTTAAG 2 cut(s) 28, 338
BfuI GTATCC 1 cut(s) 887
BglII AGATCT 2 cut(s) 1051, 1420
BisI GCNGC 5 cut(s) 290, 1122, 1269, 1505, 2088
BlsI GCNGC 5 cut(s) 291, 1123, 1270, 1506, 2089
Bme1390I CCNGG 1 cut(s) 1944
Bme18I GGWCC 1 cut(s) 1434
BmeT110I CYCGRG 1 cut(s) 503
BmgBI CACGTC 1 cut(s) 1673
BmgT120I GGNCC 1 cut(s) 1434
BmiI GGNNCC 1 cut(s) 1976
BmrFI CCNGG 1 cut(s) 1944
BmsI GCATC 1 cut(s) 1095
BpiI GAAGAC 2 cut(s) 1118, 2001
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 1944
BsaAI YACGTR 1 cut(s) 1567
BsaBI GATNNNNATC 1 cut(s) 1419
BsaWI WCCGGW 1 cut(s) 1717
Bsc4I CCNNNNNNNGG 1 cut(s) 957
Bse1I ACTGG 3 cut(s) 204, 1278, 2049
Bse8I GATNNNNATC 1 cut(s) 1419
BseAI TCCGGA 1 cut(s) 1717
BseGI GGATG 7 cut(s) 200, 773, 900, 1387, 1693, 1738, 1894
BseJI GATNNNNATC 1 cut(s) 1419
BseLI CCNNNNNNNGG 1 cut(s) 957
BseNI ACTGG 3 cut(s) 204, 1278, 2049
BseXI GCAGC 4 cut(s) 276, 1133, 1280, 1516
BshFI GGCC 4 cut(s) 225, 950, 1184, 1219
BsiHKAI GWGCWC 2 cut(s) 276, 1462
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 2 cut(s) 1718, 1943
BslFI GGGAC 2 cut(s) 900, 1987
BslI CCNNNNNNNGG 1 cut(s) 957
BsmAI GTCTC 3 cut(s) 29, 1081, 2039
BsmFI GGGAC 2 cut(s) 900, 1987
BsnI GGCC 4 cut(s) 225, 950, 1184, 1219
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 4 cut(s) 276, 1180, 1348, 1462
Bsp13I TCCGGA 1 cut(s) 1717
BspACI CCGC 4 cut(s) 765, 1371, 1544, 1897
BspANI GGCC 4 cut(s) 225, 950, 1184, 1219
BspEI TCCGGA 1 cut(s) 1717
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 1976
BspPI GGATC 7 cut(s) 376, 864, 1668, 1788, 1829, 1969, 1982
BspTI CTTAAG 2 cut(s) 28, 338
BsrI ACTGG 3 cut(s) 204, 1278, 2049
Bst4CI ACNGT 6 cut(s) 532, 637, 851, 866, 945, 1234
Bst6I CTCTTC 1 cut(s) 1542
BstAFI CTTAAG 2 cut(s) 28, 338
BstAPI GCANNNNNTGC 1 cut(s) 2045
BstBAI YACGTR 1 cut(s) 1567
BstC8I GCNNGC 4 cut(s) 68, 433, 561, 1043
BstENI CCTNNNNNAGG 1 cut(s) 955
BstF5I GGATG 7 cut(s) 200, 773, 900, 1387, 1693, 1738, 1894
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 3 cut(s) 29, 1081, 2039
BstMWI GCNNNNNNNGC 5 cut(s) 67, 569, 1457, 1478, 2045
BstNSI RCATGY 3 cut(s) 451, 522, 995
BstSCI CCNGG 1 cut(s) 1942
BstSFI CTRYAG 2 cut(s) 971, 1948
BstV1I GCAGC 4 cut(s) 276, 1133, 1280, 1516
BstV2I GAAGAC 2 cut(s) 1118, 2001
BstX2I RGATCY 6 cut(s) 869, 1051, 1420, 1660, 1780, 1974
BstXI CCANNNNNNTGG 1 cut(s) 2056
BstYI RGATCY 6 cut(s) 869, 1051, 1420, 1660, 1780, 1974
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 4 cut(s) 225, 950, 1184, 1219
BtrI CACGTC 1 cut(s) 1673
BtsCI GGATG 7 cut(s) 200, 773, 900, 1387, 1693, 1738, 1894
BtsI GCAGTG 1 cut(s) 1446
BtsIMutI CAGTG 4 cut(s) 856, 1271, 1446, 1611
Cac8I GCNNGC 4 cut(s) 68, 433, 561, 1043
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 1434
DraI TTTAAA 1 cut(s) 1485
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 1 cut(s) 1542
EarI CTCTTC 1 cut(s) 1542
Ecl136II GAGCTC 2 cut(s) 274, 1460
Eco24I GRGCYC 4 cut(s) 276, 1180, 1348, 1462
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 1434
Eco53kI GAGCTC 2 cut(s) 274, 1460
Eco57I CTGAAG 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 1567
Eco88I CYCGRG 1 cut(s) 503
EcoICRI GAGCTC 2 cut(s) 274, 1460
EcoNI CCTNNNNNAGG 1 cut(s) 955
EcoRI GAATTC 2 cut(s) 598, 829
EcoRV GATATC 1 cut(s) 1027
EcoT38I GRGCYC 4 cut(s) 276, 1180, 1348, 1462
FaqI GGGAC 2 cut(s) 900, 1987
FbaI TGATCA 3 cut(s) 837, 1443, 1608
Fnu4HI GCNGC 5 cut(s) 290, 1122, 1269, 1505, 2088
FokI GGATG 7 cut(s) 187, 780, 907, 1394, 1700, 1745, 1901
FriOI GRGCYC 4 cut(s) 276, 1180, 1348, 1462
Fsp4HI GCNGC 5 cut(s) 290, 1122, 1269, 1505, 2088
FspBI CTAG 6 cut(s) 95, 1049, 1239, 1574, 1632, 1784
GlaI GCGC 1 cut(s) 293
GluI GCNGC 5 cut(s) 290, 1122, 1269, 1505, 2088
HaeIII GGCC 4 cut(s) 225, 950, 1184, 1219
HapII CCGG 2 cut(s) 1718, 1943
HhaI GCGC 1 cut(s) 294
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 3 cut(s) 924, 1579, 1738
HindII GTYRAC 3 cut(s) 924, 1579, 1738
HindIII AAGCTT 4 cut(s) 173, 1470, 1479, 1487
HinfI GANTC 7 cut(s) 85, 164, 685, 722, 913, 1291, 1825
HpaI GTTAAC 1 cut(s) 924
HpaII CCGG 2 cut(s) 1718, 1943
HphI GGTGA 5 cut(s) 371, 872, 1175, 1508, 1915
Hpy166II GTNNAC 4 cut(s) 76, 924, 1579, 1738
Hpy188I TCNGA 4 cut(s) 418, 664, 1605, 2017
Hpy188III TCNNGA 9 cut(s) 229, 269, 311, 551, 603, 1146, 1718, 1784, 1829
Hpy8I GTNNAC 4 cut(s) 76, 924, 1579, 1738
HpyAV CCTTC 5 cut(s) 885, 899, 1577, 1848, 1894
HpyCH4III ACNGT 6 cut(s) 532, 637, 851, 866, 945, 1234
HpyCH4IV ACGT 3 cut(s) 920, 1566, 1672
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 569, 1457, 1478, 2045
HpySE526I ACGT 3 cut(s) 920, 1566, 1672
HspAI GCGC 1 cut(s) 292
Kpn2I TCCGGA 1 cut(s) 1717
Ksp22I TGATCA 3 cut(s) 837, 1443, 1608
KspAI GTTAAC 1 cut(s) 924
LmnI GCTCC 3 cut(s) 1050, 1457, 1691
Lsp1109I GCAGC 4 cut(s) 276, 1133, 1280, 1516
LweI GCATC 1 cut(s) 1095
MaeI CTAG 6 cut(s) 95, 1049, 1239, 1574, 1632, 1784
MaeII ACGT 3 cut(s) 920, 1566, 1672
MaeIII GTNAC 7 cut(s) 317, 622, 860, 1234, 1531, 1589, 2051
MboII GAAGA 6 cut(s) 1123, 1529, 1655, 1692, 1834, 2006
MflI RGATCY 6 cut(s) 869, 1051, 1420, 1660, 1780, 1974
MhlI GDGCHC 4 cut(s) 276, 1180, 1348, 1462
MlsI TGGCCA 1 cut(s) 1184
MluNI TGGCCA 1 cut(s) 1184
MlyI GAGTC 2 cut(s) 158, 922
MmeI TCCRAC 3 cut(s) 503, 904, 1299
MnlI CCTC 7 cut(s) 236, 588, 668, 1012, 1447, 1723, 1965
Mox20I TGGCCA 1 cut(s) 1184
MroI TCCGGA 1 cut(s) 1717
MscI TGGCCA 1 cut(s) 1184
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 1184
MspA1I CMGCKG 1 cut(s) 487
MspCI CTTAAG 2 cut(s) 28, 338
MspI CCGG 2 cut(s) 1718, 1943
MspR9I CCNGG 1 cut(s) 1944
MwoI GCNNNNNNNGC 5 cut(s) 67, 569, 1457, 1478, 2045
NciI CCSGG 1 cut(s) 1944
NlaIV GGNNCC 1 cut(s) 1976
NmuCI GTSAC 3 cut(s) 860, 1589, 2051
NspI RCATGY 3 cut(s) 451, 522, 995
PagI TCATGA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 917
PfeI GAWTC 5 cut(s) 85, 685, 722, 1291, 1825
PkrI GCNGC 5 cut(s) 291, 1123, 1270, 1506, 2089
PleI GAGTC 2 cut(s) 158, 921
PmaCI CACGTG 1 cut(s) 1567
PmlI CACGTG 1 cut(s) 1567
PpsI GAGTC 2 cut(s) 158, 921
Ppu21I YACGTR 1 cut(s) 1567
PsiI TTATAA 1 cut(s) 1004
Psp124BI GAGCTC 2 cut(s) 276, 1462
PspCI CACGTG 1 cut(s) 1567
PspN4I GGNNCC 1 cut(s) 1976
PspPI GGNCC 1 cut(s) 1434
PsuI RGATCY 6 cut(s) 869, 1051, 1420, 1660, 1780, 1974
PvuII CAGCTG 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 159
SacI GAGCTC 2 cut(s) 276, 1462
SatI GCNGC 5 cut(s) 290, 1122, 1269, 1505, 2088
Sau96I GGNCC 1 cut(s) 1434
SchI GAGTC 2 cut(s) 158, 922
ScrFI CCNGG 1 cut(s) 1944
SduI GDGCHC 4 cut(s) 276, 1180, 1348, 1462
SfaNI GCATC 1 cut(s) 1095
SfcI CTRYAG 2 cut(s) 971, 1948
SinI GGWCC 1 cut(s) 1434
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 3 cut(s) 28, 269, 338
SmoI CTYRAG 3 cut(s) 28, 269, 338
SpeI ACTAGT 1 cut(s) 1238
SsiI CCGC 4 cut(s) 765, 1371, 1544, 1897
SspI AATATT 1 cut(s) 1864
SspMI CTAG 6 cut(s) 95, 1049, 1239, 1574, 1632, 1784
SstI GAGCTC 2 cut(s) 276, 1462
StyD4I CCNGG 1 cut(s) 1942
TaaI ACNGT 6 cut(s) 532, 637, 851, 866, 945, 1234
TaiI ACGT 3 cut(s) 923, 1569, 1675
TfiI GAWTC 5 cut(s) 85, 685, 722, 1291, 1825
TscAI CASTG 4 cut(s) 856, 1278, 1453, 1618
TseFI GTSAC 3 cut(s) 860, 1589, 2051
TseI GCWGC 5 cut(s) 289, 1121, 1268, 1504, 2087
Tsp45I GTSAC 3 cut(s) 860, 1589, 2051
TspGWI ACGGA 2 cut(s) 993, 1470
TspRI CASTG 4 cut(s) 856, 1278, 1453, 1618
Vha464I CTTAAG 2 cut(s) 28, 338
VpaK11BI GGWCC 1 cut(s) 1434
XagI CCTNNNNNAGG 1 cut(s) 955
XapI RAATTY 5 cut(s) 598, 657, 829, 983, 1701
XbaI TCTAGA 1 cut(s) 1783
XceI RCATGY 3 cut(s) 451, 522, 995
XspI CTAG 6 cut(s) 95, 1049, 1239, 1574, 1632, 1784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.