Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005582.1

Orthogroup ID

OG0012421

Physical Location & Seq

Genomic Coordinates Forward (+)

10574 .. 12187

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005582.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

atgcctgaaagagatgtggcatgttggaatactgcaatttcttgttattatcaaaatgggcaagctcagaaggcaatggacttgtatgagaagatgaggagttctggctttgagcctaatgtagtaacgatcactactgttatttcatcatgtgcaagacttttggatttggagagaggtagggagattcacaaggagttgatacaaaatcgattcgttttggattcctttgttagttctgctttggtagacatgtatgggaaatgtggatgtttagatatggcaaaagagatttttgaacaagtcccaagaaagaatgtcatcgcttggaactccatgattgcagcctatcgtgtaacaggtgacagtaaatcttgtatcgatctttttagaaggatgactgatgaaggaactagtccctctttgattacttttagcagcattttgttggctagttcaagatcggtccaacttcaacatggaaaattcctgcacgcgtatatgataagaaactatgtagaggctgatatctatgtttacagttcgcttattgatctctactttgtgtgtggaagtatctcgtctgctaaaaatgtctttgaaaagatgtccaagacaaatgtagtttcttggaatgttatgatttctggattcgtgaaagtgggaaattatttcagggctctagggttatatgatgagatgaaagaagctggtgtaaggccaaacgccatcacggtaactagtatcctatcggcttgttcacaactaacagcactggaaaagggtaaggagattcacagaactgttgttgatagtgagttggaaaccaatgaaatagtcatgggggctctccttgacatgtatgctaaatgtggtgcggtggatgaagcaagtaatgttttcaatagattaccaggtagagatcttgtgtcatggacatccatgatcacggcttatgggtctcatggtcagactaaaaaagctttaaagctttttgatgaaatgcaacaatccaatgcaaaaccagatggagttactcttcttgcagtgctatccgcttgtagccatgttggattagttgatgaaggttgttgctatttcaataaaatgaccagtgaatatgggattgaaccgagaatagaatattactcttgcttaatagatcttcttggccgtgctggtaggttgaatgaagcttaccaaatcatccaaagaactccacaaattagggaggatgttgacttgttaagtacactattttctgcatgtcgtttgcacggagatcaagacttgggtgtaaaaattggaagattgctaattgagaagaatcctgatgatccttcaacatatattatgttatcacatagtcttgcttctggaaacaaatggaatgaggtgcggaacgtgagactaaagatgaaagaattgggattaaggaaaaatcctgggtgtagctggatagagattaacgagaggattcagcctttctttgttcaagacgagttccacccagaatccgaaatggtatatcagtgtctcaaacttctcaagagtcacatggagggagatgagttatttccacactggggatcagcaatatttcatactatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

537

Amino Acids

60.51

Weight (kDa)

6.01

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27110
fragaria_vesca	FvH4_3g28010
malus_domestica	MD03G1167900.v1.1
prunus_persica	Prupe.4G268300_v2.0.a1
pyrus_communis	pycom03g12310
rosa_chinensis	RchiOBHm_Chr3g0448241
rosa_laevigata	RLG00000025934
rosa_multiflora	Rmu_co8274213.1_g000001 Rmu_sc0005582.1_g000002 Rmu_sc0005969.1_g000039 Rmu_sc0005969.1_g000046 Rmu_sc0016487.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426370
rosa_rugosa	Rorug02G0609300
rosa_samantha	Rh3AG009100 Rh3BG008700 Rh3CG008800 Rh3DG009400
rosa_wichuraiana	Rw3G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	878, 1056, 1399
AclWI	GGATC	2 cut(s)	1331, 1597
AcoI	YGGCCR	1 cut(s)	1171
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	1 cut(s)	1252
AfiI	CCNNNNNNNGG	1 cut(s)	1586
AflIII	ACRYGT	3 cut(s)	252, 495, 858
AhlI	ACTAGT	2 cut(s)	413, 740
AjnI	CCWGG	2 cut(s)	913, 1444
AluBI	AGCT	6 cut(s)	65, 710, 983, 991, 1196, 1455
AluI	AGCT	6 cut(s)	65, 710, 983, 991, 1196, 1455
Alw26I	GTCTC	3 cut(s)	966, 1402, 1541
AlwI	GGATC	2 cut(s)	1331, 1597
AoxI	GGCC	2 cut(s)	719, 1171
ApeKI	GCWGC	2 cut(s)	344, 438
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	682, 850
BbvI	GCAGC	2 cut(s)	356, 450
BccI	CCATC	2 cut(s)	737, 1022
BceAI	ACGGC	2 cut(s)	966, 1158
BciT130I	CCWGG	2 cut(s)	915, 1446
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	3 cut(s)	966, 1402, 1541
BcuI	ACTAGT	2 cut(s)	413, 740
BfaI	CTAG	4 cut(s)	414, 453, 683, 741
BfuI	GTATCC	1 cut(s)	755
BglII	AGATCT	2 cut(s)	922, 1162
BisI	GCNGC	2 cut(s)	345, 439
BlsI	GCNGC	2 cut(s)	346, 440
Bme1390I	CCNGG	2 cut(s)	915, 1446
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	915, 1446
BmrI	ACTGGG	1 cut(s)	1594
BmuI	ACTGGG	1 cut(s)	1594
BpuEI	CTTGAG	1 cut(s)	1532
Bsa29I	ATCGAT	2 cut(s)	211, 381
BsaI	GGTCTC	1 cut(s)	966
BsaJI	CCNNGG	1 cut(s)	1445
Bsc4I	CCNNNNNNNGG	1 cut(s)	1586
Bse1I	ACTGG	3 cut(s)	780, 1113, 1589
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	915, 1446
BseCI	ATCGAT	2 cut(s)	211, 381
BseDI	CCNNGG	1 cut(s)	1445
BseGI	GGATG	6 cut(s)	275, 402, 889, 938, 1206, 1240
BseLI	CCNNNNNNNGG	1 cut(s)	1586
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	780, 1113, 1589
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	356, 450
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	721, 1173
BshVI	ATCGAT	2 cut(s)	211, 381
BslFI	GGGAC	2 cut(s)	290, 402
BslI	CCNNNNNNNGG	1 cut(s)	1586
BsmAI	GTCTC	3 cut(s)	966, 1402, 1541
BsmFI	GGGAC	2 cut(s)	290, 402
BsnI	GGCC	2 cut(s)	721, 1173
Bso31I	GGTCTC	1 cut(s)	966
Bsp1286I	GDGCHC	2 cut(s)	682, 850
BspACI	CCGC	3 cut(s)	878, 1056, 1399
BspANI	GGCC	2 cut(s)	721, 1173
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	2 cut(s)	211, 381
BspFNI	CGCG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	1331, 1597
BspTNI	GGTCTC	1 cut(s)	966
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	780, 1113, 1589
BssECI	CCNNGG	1 cut(s)	1445
Bst2UI	CCWGG	2 cut(s)	915, 1446
Bst4CI	ACNGT	5 cut(s)	139, 368, 542, 736, 805
Bst6I	CTCTTC	1 cut(s)	1044
BstC8I	GCNNGC	2 cut(s)	63, 495
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	6 cut(s)	275, 402, 889, 938, 1206, 1240
BstFNI	CGCG	1 cut(s)	497
BstMAI	GTCTC	3 cut(s)	966, 1402, 1541
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	915, 1446
BstNSI	RCATGY	4 cut(s)	24, 256, 862, 1269
BstSCI	CCNGG	2 cut(s)	913, 1444
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	356, 450
BstX2I	RGATCY	2 cut(s)	922, 1162
BstYI	RGATCY	2 cut(s)	922, 1162
Bsu15I	ATCGAT	2 cut(s)	211, 381
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	721, 1173
BsuTUI	ATCGAT	2 cut(s)	211, 381
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	6 cut(s)	275, 402, 889, 938, 1206, 1240
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	5 cut(s)	773, 1053, 1120, 1538, 1582
Cac8I	GCNNGC	2 cut(s)	63, 495
Cfr13I	GGNCC	1 cut(s)	466
ClaI	ATCGAT	2 cut(s)	211, 381
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	1251
CviQI	GTAC	1 cut(s)	1251
DdeI	CTNAG	1 cut(s)	66
DraI	TTTAAA	1 cut(s)	987
EaeI	YGGCCR	1 cut(s)	1171
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco24I	GRGCYC	2 cut(s)	682, 850
Eco31I	GGTCTC	1 cut(s)	966
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	913, 1444
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	2 cut(s)	682, 850
FaqI	GGGAC	2 cut(s)	290, 402
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	345, 439
FokI	GGATG	6 cut(s)	282, 409, 896, 925, 1193, 1247
FriOI	GRGCYC	2 cut(s)	682, 850
Fsp4HI	GCNGC	2 cut(s)	345, 439
FspBI	CTAG	4 cut(s)	414, 453, 683, 741
GluI	GCNGC	2 cut(s)	345, 439
HaeIII	GGCC	2 cut(s)	721, 1173
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HindIII	AAGCTT	3 cut(s)	981, 989, 1194
HinfI	GANTC	9 cut(s)	187, 213, 224, 651, 793, 1327, 1477, 1514, 1552
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	5 cut(s)	250, 538, 761, 1240, 1253
Hpy188I	TCNGA	3 cut(s)	69, 972, 1519
Hpy188III	TCNNGA	8 cut(s)	459, 648, 655, 1286, 1331, 1377, 1496, 1549
Hpy8I	GTNNAC	5 cut(s)	250, 538, 761, 1240, 1253
HpyAV	CCTTC	5 cut(s)	64, 387, 401, 1079, 1350
HpyCH4III	ACNGT	5 cut(s)	139, 368, 542, 736, 805
HpyCH4IV	ACGT	1 cut(s)	1404
HpyCH4V	TGCA	9 cut(s)	35, 155, 344, 493, 1006, 1019, 1046, 1265, 1276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	1404
Ksp22I	TGATCA	1 cut(s)	945
Lsp1109I	GCAGC	2 cut(s)	356, 450
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	4 cut(s)	414, 453, 683, 741
MaeII	ACGT	1 cut(s)	1404
MaeIII	GTNAC	6 cut(s)	124, 355, 362, 736, 1033, 1553
MboII	GAAGA	5 cut(s)	103, 1031, 1157, 1320, 1336
MflI	RGATCY	2 cut(s)	922, 1162
MhlI	GDGCHC	2 cut(s)	682, 850
MluCI	AATT	7 cut(s)	36, 485, 667, 1224, 1302, 1317, 1424
MluI	ACGCGT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	1561
MmeI	TCCRAC	4 cut(s)	5, 493, 801, 1051
MnlI	CCTC	8 cut(s)	90, 170, 430, 514, 1225, 1387, 1467, 1555
MseI	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
MspR9I	CCNGG	2 cut(s)	915, 1446
MvaI	CCWGG	2 cut(s)	915, 1446
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	362, 1553
NspI	RCATGY	4 cut(s)	24, 256, 862, 1269
PciI	ACATGT	2 cut(s)	252, 858
PfeI	GAWTC	8 cut(s)	187, 213, 224, 651, 793, 1327, 1477, 1514
PkrI	GCNGC	2 cut(s)	346, 440
PleI	GAGTC	1 cut(s)	1560
PpsI	GAGTC	1 cut(s)	1560
PscI	ACATGT	2 cut(s)	252, 858
Psp6I	CCWGG	2 cut(s)	913, 1444
PspGI	CCWGG	2 cut(s)	913, 1444
PspPI	GGNCC	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	922, 1162
RsaI	GTAC	1 cut(s)	1252
RsaNI	GTAC	1 cut(s)	1251
SaqAI	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
SatI	GCNGC	2 cut(s)	345, 439
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	1561
ScrFI	CCNGG	2 cut(s)	915, 1446
SduI	GDGCHC	2 cut(s)	682, 850
SexAI	ACCWGGT	1 cut(s)	913
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	1547
SmoI	CTYRAG	1 cut(s)	1547
SpeI	ACTAGT	2 cut(s)	413, 740
Sse9I	AATT	7 cut(s)	36, 485, 667, 1224, 1302, 1317, 1424
SsiI	CCGC	3 cut(s)	878, 1056, 1399
SspI	AATATT	2 cut(s)	1145, 1599
SspMI	CTAG	4 cut(s)	414, 453, 683, 741
StyD4I	CCNGG	2 cut(s)	913, 1444
TaaI	ACNGT	5 cut(s)	139, 368, 542, 736, 805
TaiI	ACGT	1 cut(s)	1407
TaqI	TCGA	2 cut(s)	211, 381
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	7 cut(s)	36, 485, 667, 1224, 1302, 1317, 1424
TatI	WGTACW	1 cut(s)	1250
TfiI	GAWTC	8 cut(s)	187, 213, 224, 651, 793, 1327, 1477, 1514
Tru1I	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
Tru9I	TTAA	5 cut(s)	986, 1157, 1247, 1433, 1467
TscAI	CASTG	5 cut(s)	780, 1053, 1120, 1538, 1589
TseFI	GTSAC	2 cut(s)	362, 1553
TseI	GCWGC	2 cut(s)	344, 438
Tsp45I	GTSAC	2 cut(s)	362, 1553
TspGWI	ACGGA	1 cut(s)	1293
TspRI	CASTG	5 cut(s)	780, 1053, 1120, 1538, 1589
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	4 cut(s)	24, 256, 862, 1269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	414, 453, 683, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.