Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8274213.1

Orthogroup ID

OG0012421

Physical Location & Seq

Genomic Coordinates Forward (+)

20 .. 834

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8274213.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 815 bp

atgcctgaaagagatgtggcatgttggaatactgcaatttcttgttattatcaaaatgggcaagctcagaaggcaatggacttgtatgagaagatgaggagttctggctttgagcctaatgtagtaacgatcactactgttatttcatcatgtgcaagacttttggatttggagagaggtagggagattcacaaggagttgatacaaaatcgattcgttttggattcctttgttagttctgctttggtagacatgtatgggaaatgtggatgtttagatatggcaaaagagatttttgaacaagtcccaagaaagaatgtcatcgcttggaactccatgattgcagcctatcgtgtaacaggtgacagtaaatcttgtatcgatctttttagaaggatgactgatgaaggaactagtccctctttgattacttttagcagcattttgttggctagttcaagatcggtccaacttcaacatggaaaattcctgcacgcgtatatgataagaaactatgtagaggctgatatctatgtttacagttcgcttattgatctctactttgtgtgtggaagtatctcgtctgctaaaaatgtctttgaaaagatgtccaagacaaatgtagtttcttggaatgttatgatttctggattcgtgaaagtgggaaattatttcagggctctagggttatatgatgagatgaaagaagctggtgtaaggccaaacgccatcacggtaactagtatcctatcggcttgttcacaactaacagcactggaaaagggtaaggagattcacagaactgttgttgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

271

Amino Acids

30.44

Weight (kDa)

8.05

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27110
fragaria_vesca	FvH4_3g28010
malus_domestica	MD03G1167900.v1.1
prunus_persica	Prupe.4G268300_v2.0.a1
pyrus_communis	pycom03g12310
rosa_chinensis	RchiOBHm_Chr3g0448241
rosa_laevigata	RLG00000025934
rosa_multiflora	Rmu_co8274213.1_g000001 Rmu_sc0005582.1_g000002 Rmu_sc0005969.1_g000039 Rmu_sc0005969.1_g000046 Rmu_sc0016487.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426370
rosa_rugosa	Rorug02G0609300
rosa_samantha	Rh3AG009100 Rh3BG008700 Rh3CG008800 Rh3DG009400
rosa_wichuraiana	Rw3G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	485
AflIII	ACRYGT	2 cut(s)	252, 495
AgsI	TTSAA	4 cut(s)	299, 459, 476, 602
AhlI	ACTAGT	2 cut(s)	413, 740
AluBI	AGCT	2 cut(s)	65, 710
AluI	AGCT	2 cut(s)	65, 710
AoxI	GGCC	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	344, 438
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	356, 450
BccI	CCATC	1 cut(s)	737
BciVI	GTATCC	1 cut(s)	755
BcuI	ACTAGT	2 cut(s)	413, 740
BfaI	CTAG	4 cut(s)	414, 453, 683, 741
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	2 cut(s)	345, 439
BlsI	GCNGC	2 cut(s)	346, 440
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
Bsa29I	ATCGAT	2 cut(s)	211, 381
Bse1I	ACTGG	1 cut(s)	780
Bse3DI	GCAATG	1 cut(s)	81
BseCI	ATCGAT	2 cut(s)	211, 381
BseGI	GGATG	2 cut(s)	275, 402
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	356, 450
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	721
BshVI	ATCGAT	2 cut(s)	211, 381
BslFI	GGGAC	2 cut(s)	290, 402
BsmFI	GGGAC	2 cut(s)	290, 402
BsnI	GGCC	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	129, 382, 461, 553
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	2 cut(s)	211, 381
BspFNI	CGCG	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	780
BssMI	GATC	4 cut(s)	129, 382, 461, 553
Bst4CI	ACNGT	5 cut(s)	139, 368, 542, 736, 805
BstC8I	GCNNGC	2 cut(s)	63, 495
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	275, 402
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	4 cut(s)	132, 385, 464, 556
BstMBI	GATC	4 cut(s)	129, 382, 461, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	2 cut(s)	24, 256
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	356, 450
Bsu15I	ATCGAT	2 cut(s)	211, 381
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	1 cut(s)	721
BsuTUI	ATCGAT	2 cut(s)	211, 381
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	275, 402
BtsIMutI	CAGTG	1 cut(s)	773
Cac8I	GCNNGC	2 cut(s)	63, 495
Cfr13I	GGNCC	1 cut(s)	466
ClaI	ATCGAT	2 cut(s)	211, 381
CviAII	CATG	5 cut(s)	21, 150, 253, 337, 479
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	4 cut(s)	131, 384, 463, 555
DpnII	GATC	4 cut(s)	129, 382, 461, 553
Eco24I	GRGCYC	1 cut(s)	682
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	682
FaeI	CATG	5 cut(s)	24, 153, 256, 340, 482
FaqI	GGGAC	2 cut(s)	290, 402
FatI	CATG	5 cut(s)	20, 149, 252, 336, 478
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	345, 439
FokI	GGATG	2 cut(s)	282, 409
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	2 cut(s)	345, 439
FspBI	CTAG	4 cut(s)	414, 453, 683, 741
GluI	GCNGC	2 cut(s)	345, 439
HaeIII	GGCC	1 cut(s)	721
Hin1II	CATG	5 cut(s)	24, 153, 256, 340, 482
HinfI	GANTC	5 cut(s)	187, 213, 224, 651, 793
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	3 cut(s)	250, 538, 761
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	459, 648, 655
Hpy8I	GTNNAC	3 cut(s)	250, 538, 761
HpyAV	CCTTC	3 cut(s)	64, 387, 401
HpyCH4III	ACNGT	5 cut(s)	139, 368, 542, 736, 805
HpyCH4V	TGCA	4 cut(s)	35, 155, 344, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	24, 153, 256, 340, 482
Kzo9I	GATC	4 cut(s)	129, 382, 461, 553
LpnPI	CCDG	8 cut(s)	18, 90, 345, 503, 633, 661, 696, 761
Lsp1109I	GCAGC	2 cut(s)	356, 450
MaeI	CTAG	4 cut(s)	414, 453, 683, 741
MaeIII	GTNAC	4 cut(s)	124, 355, 362, 736
MalI	GATC	4 cut(s)	131, 384, 463, 555
MboI	GATC	4 cut(s)	129, 382, 461, 553
MboII	GAAGA	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	3 cut(s)	36, 485, 667
MluI	ACGCGT	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	5, 493
MnlI	CCTC	4 cut(s)	90, 170, 430, 514
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	4 cut(s)	129, 382, 461, 553
NlaIII	CATG	5 cut(s)	24, 153, 256, 340, 482
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	2 cut(s)	24, 256
PciI	ACATGT	1 cut(s)	252
PfeI	GAWTC	5 cut(s)	187, 213, 224, 651, 793
PkrI	GCNGC	2 cut(s)	346, 440
PscI	ACATGT	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	466
SatI	GCNGC	2 cut(s)	345, 439
Sau3AI	GATC	4 cut(s)	129, 382, 461, 553
Sau96I	GGNCC	1 cut(s)	466
SduI	GDGCHC	1 cut(s)	682
SetI	ASST	4 cut(s)	67, 181, 364, 712
SinI	GGWCC	1 cut(s)	466
SpeI	ACTAGT	2 cut(s)	413, 740
Sse9I	AATT	3 cut(s)	36, 485, 667
SspMI	CTAG	4 cut(s)	414, 453, 683, 741
TaaI	ACNGT	5 cut(s)	139, 368, 542, 736, 805
TaqI	TCGA	2 cut(s)	211, 381
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	3 cut(s)	36, 485, 667
TfiI	GAWTC	5 cut(s)	187, 213, 224, 651, 793
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	344, 438
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	135, 420, 716
TspRI	CASTG	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	2 cut(s)	24, 256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	414, 453, 683, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.