Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Reverse (-)

10647467 .. 10650066

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCTGGTTACTACCCCAGCAATGTTACCTCTGATCATATCCAACAGTACTTGGACGAAAACAAATCGTTGATTCTGAAGATTGTTGAGTCTCAAAACTCTGGAAAGCTTAGCGAATGCGCCGAGAATCAAGCAAGGCTTCAACGCAACCTAATGTACCTAGCTGCAATAGCAGATTCTCAGCCTCAGCCACCAAGTGTGCATAGCCAGTATGGATCTGCTGGTGGTGGGATGATTCAGGGAGAAGGAGGGTCACACTATTTGCAGCAGCAACAAGCGACTCAACAGCAACAGATGACTCAGCAGTCTCTAATGGCGGCTCGATCTTCAATGTTGTATGCTCAGCAACAGCAGCAGCAGCAGCCTTACGCGACGCTTCAGCATCAGCAATTGCACCATAGCCAGCTTGGAATGAGCTCGAGCAGCGGAGGAGGAGGAAGCAGTGGTCTCCATATCCTTCAGGGAGAGGCTGGTGGGTTTCATGATTTTGGCCGTGGGAAGCCGGAAATGGGAAGTGGTGGTGGCGGTGAAGGCAGAGGAGGAAGTTCAGGGGATGGTGGAGAAACCCTTTACTTGAAATCATCAGATGATGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

210

Amino Acids

22.46

Weight (kDa)

5.78

Isoelectric Point (pI)

71.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	337
AccII	CGCG	1 cut(s)	404
AciI	CCGC	3 cut(s)	350, 459, 558
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	523
AcuI	CTGAAG	3 cut(s)	131, 395, 476
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	83, 191
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	176, 363, 610
AluBI	AGCT	4 cut(s)	142, 197, 439, 450
AluI	AGCT	4 cut(s)	142, 197, 439, 450
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	3 cut(s)	129, 345, 485
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	9 cut(s)	25, 197, 298, 301, 385, 388, 391, 394, 456
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	9 cut(s)	37, 184, 310, 313, 397, 400, 403, 406, 468
BccI	CCATC	3 cut(s)	28, 581, 617
BceAI	ACGGC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	129, 345, 485
BfaI	CTAG	1 cut(s)	194
BlpI	GCTNAGC	2 cut(s)	143, 375
BmcAI	AGTACT	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	6, 12, 424
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	2 cut(s)	143, 375
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	270, 592
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	227, 233, 347, 389
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	3 cut(s)	477, 480, 585
BseXI	GCAGC	9 cut(s)	37, 184, 310, 313, 397, 400, 403, 406, 468
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	3 cut(s)	129, 345, 485
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	3 cut(s)	67, 248, 356
Bsp1720I	GCTNAGC	2 cut(s)	143, 375
BspACI	CCGC	3 cut(s)	350, 459, 558
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	4 cut(s)	226, 232, 346, 388
BspFNI	CGCG	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	514
BspPI	GGATC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	3 cut(s)	67, 248, 356
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	5 cut(s)	143, 213, 219, 333, 375
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	270, 592
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	70, 251, 359
BstMAI	GTCTC	3 cut(s)	129, 345, 485
BstMBI	GATC	3 cut(s)	67, 248, 356
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 25, 203, 385, 391, 394, 456, 564
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	9 cut(s)	37, 184, 310, 313, 397, 400, 403, 406, 468
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	270, 592
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	155
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	82, 190
CviAII	CATG	2 cut(s)	31, 515
CviQI	GTAC	2 cut(s)	82, 190
DdeI	CTNAG	5 cut(s)	143, 213, 219, 333, 375
DpnI	GATC	3 cut(s)	69, 250, 358
DpnII	GATC	3 cut(s)	67, 248, 356
DraIII	CACNNNGTG	1 cut(s)	230
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	523
Ecl136II	GAGCTC	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	3 cut(s)	131, 395, 476
Eco88I	CYCGRG	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	2 cut(s)	34, 518
FaiI	YATR	8 cut(s)	32, 72, 237, 246, 372, 432, 486, 516
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	2 cut(s)	30, 514
FbaI	TGATCA	1 cut(s)	67
FokI	GGATG	2 cut(s)	277, 599
FriOI	GRGCYC	1 cut(s)	452
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	525
HapII	CCGG	1 cut(s)	536
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	34, 518
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	7 cut(s)	106, 122, 160, 209, 268, 313, 331
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	3 cut(s)	67, 111, 619
Hpy188III	TCNNGA	2 cut(s)	135, 515
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	3 cut(s)	272, 500, 557
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	4, 19, 25, 200, 235, 298, 427
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 25, 203, 385, 391, 394, 456, 564
HpyF3I	CTNAG	5 cut(s)	143, 213, 219, 333, 375
Hsp92II	CATG	2 cut(s)	34, 518
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 248, 356
Lsp1109I	GCAGC	9 cut(s)	37, 184, 310, 313, 397, 400, 403, 406, 468
LweI	GCATC	3 cut(s)	6, 12, 424
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	3 cut(s)	41, 58, 285
MalI	GATC	3 cut(s)	69, 250, 358
MboI	GATC	3 cut(s)	67, 248, 356
MboII	GAAGA	2 cut(s)	124, 351
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	2 cut(s)	422, 628
MlyI	GAGTC	3 cut(s)	131, 307, 325
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	9 cut(s)	73, 228, 275, 455, 458, 461, 493, 563, 566
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	155
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	8 cut(s)	16, 25, 203, 385, 391, 394, 456, 564
NdeII	GATC	3 cut(s)	67, 248, 356
NlaIII	CATG	2 cut(s)	34, 518
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	451
PagI	TCATGA	1 cut(s)	514
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	4 cut(s)	106, 160, 209, 268
PleI	GAGTC	3 cut(s)	130, 307, 325
PpsI	GAGTC	3 cut(s)	130, 307, 325
Psp124BI	GAGCTC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	2 cut(s)	83, 191
RsaNI	GTAC	2 cut(s)	82, 190
SacI	GAGCTC	1 cut(s)	452
Sau3AI	GATC	3 cut(s)	67, 248, 356
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	3 cut(s)	131, 307, 325
SduI	GDGCHC	1 cut(s)	452
SetI	ASST	8 cut(s)	15, 65, 144, 186, 195, 199, 441, 452
SfaNI	GCATC	3 cut(s)	6, 12, 424
Sfr274I	CTCGAG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	2 cut(s)	422, 628
SsiI	CCGC	3 cut(s)	350, 459, 558
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	355, 452
TasI	AATT	2 cut(s)	422, 628
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	4 cut(s)	106, 160, 209, 268
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	9 cut(s)	25, 197, 298, 301, 385, 388, 391, 394, 456
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	451
XspI	CTAG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.