Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Forward (+)

29703667 .. 29707038

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTATCCCAACAACGTCACTACAGATCACATTCAACAGTACTTGGACGAGAACAAGTCATTGATTCTGAAGATCGTTGAGAGCCAGAATACAGGGAAATTGAGTGAATGCGCAGAGAACCAAGCAAAGCTACAGAGAAATCTGATGTACCTGGCTGCCATTGCTGATTCTCAACCCCAACCCCCTACCATGCATCCTCAGTACCCTTCCACTGGCATTATGCAACCAGGAGCACATTACATGCAGCAACAAGCAGCTCAACAGATGACACCACAATCGCTCATGGCTGCACGCTCTTCTATGTTGTACTCCCAGCAGCCATTTTCAGCTCTGCAACAACAAGCCCTGCACAGCCAACTTGCCATGAGTGCTGGAGGAAGCACAGGACTTCACATGCTCCAGAGTGAGGCAAATAATGCTGGAGGCAGTGGTCAATTTGGGGCTGGAGGATTTGCTGATTATGGACGCAGCTCCCCTGGAGAAGGCCTGCATAGGAGGATGGCCAGTGGGAGTAAGCAAGATATGGGGGGTGTTGGGAGCTCTGGAGGCCATGGCGGAGATGGCGGCGAGACTCTTTACCTGAAATCTGCTGATGATGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

216

Amino Acids

22.96

Weight (kDa)

6.02

Isoelectric Point (pI)

66.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	154
AciI	CCGC	2 cut(s)	597, 606
AcoI	YGGCCR	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	4 cut(s)	83, 191, 245, 350
AfiI	CCNNNNNNNGG	3 cut(s)	254, 448, 524
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	3 cut(s)	192, 268, 517
AluBI	AGCT	5 cut(s)	172, 299, 371, 513, 582
AluI	AGCT	5 cut(s)	172, 299, 371, 513, 582
Alw21I	GWGCWC	2 cut(s)	277, 584
Alw26I	GTCTC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	3 cut(s)	526, 543, 589
ApeKI	GCWGC	8 cut(s)	25, 38, 197, 286, 296, 329, 358, 510
AspLEI	GCGC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	584
Bbv12I	GWGCWC	2 cut(s)	277, 584
BbvI	GCAGC	8 cut(s)	37, 50, 184, 298, 308, 316, 370, 522
BccI	CCATC	4 cut(s)	28, 535, 596, 632
BciT130I	CCWGG	3 cut(s)	194, 270, 519
BcoDI	GTCTC	1 cut(s)	605
BfmI	CTRYAG	2 cut(s)	63, 173
BisI	GCNGC	9 cut(s)	26, 39, 198, 287, 297, 330, 359, 511, 607
BlsI	GCNGC	9 cut(s)	27, 40, 199, 288, 298, 331, 360, 512, 608
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	194, 270, 519
BmrFI	CCNGG	3 cut(s)	194, 270, 519
BmsI	GCATC	3 cut(s)	6, 12, 244
BpmI	CTGGAG	6 cut(s)	425, 435, 483, 507, 540, 606
BsaJI	CCNNGG	2 cut(s)	517, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 448, 524
Bse1I	ACTGG	2 cut(s)	259, 546
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	194, 270, 519
BseDI	CCNNGG	2 cut(s)	517, 592
BseGI	GGATG	2 cut(s)	235, 546
BseLI	CCNNNNNNNGG	3 cut(s)	254, 448, 524
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	259, 546
BseXI	GCAGC	8 cut(s)	37, 50, 184, 298, 308, 316, 370, 522
BseYI	CCCAGC	1 cut(s)	354
BsgI	GTGCAG	2 cut(s)	315, 374
BshFI	GGCC	3 cut(s)	528, 545, 591
BsiHKAI	GWGCWC	2 cut(s)	277, 584
BslI	CCNNNNNNNGG	3 cut(s)	254, 448, 524
BsmAI	GTCTC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	528, 545, 591
Bsp1286I	GDGCHC	2 cut(s)	277, 584
Bsp143I	GATC	2 cut(s)	67, 114
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	2 cut(s)	597, 606
BspANI	GGCC	3 cut(s)	528, 545, 591
BspCNI	CTCAG	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	259, 546
BssECI	CCNNGG	2 cut(s)	517, 592
BssMI	GATC	2 cut(s)	67, 114
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	3 cut(s)	194, 270, 519
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	343
BstAPI	GCANNNNNTGC	2 cut(s)	16, 458
BstC8I	GCNNGC	2 cut(s)	334, 530
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	592
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	235, 546
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	70, 117
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	2 cut(s)	67, 114
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 25, 203, 410, 458, 588, 603
BstNI	CCWGG	3 cut(s)	194, 270, 519
BstNSI	RCATGY	2 cut(s)	286, 439
BstSCI	CCNGG	3 cut(s)	192, 268, 517
BstSFI	CTRYAG	2 cut(s)	63, 173
BstV1I	GCAGC	8 cut(s)	37, 50, 184, 298, 308, 316, 370, 522
BsuRI	GGCC	3 cut(s)	528, 545, 591
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	235, 546
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	252, 475, 553
Cac8I	GCNNGC	2 cut(s)	334, 530
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	155
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	82, 190, 244, 349
CviAII	CATG	7 cut(s)	31, 232, 283, 325, 406, 436, 593
CviQI	GTAC	4 cut(s)	82, 190, 244, 349
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	69, 116
DpnII	GATC	2 cut(s)	67, 114
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRII	CCWGG	3 cut(s)	192, 268, 517
EcoT14I	CCWWGG	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	7 cut(s)	34, 235, 286, 328, 409, 439, 596
FatI	CATG	7 cut(s)	30, 231, 282, 324, 405, 435, 592
Fnu4HI	GCNGC	9 cut(s)	26, 39, 198, 287, 297, 330, 359, 511, 607
FokI	GGATG	2 cut(s)	222, 553
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	9 cut(s)	26, 39, 198, 287, 297, 330, 359, 511, 607
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	9 cut(s)	26, 39, 198, 287, 297, 330, 359, 511, 607
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	6 cut(s)	425, 435, 483, 507, 540, 606
HaeIII	GGCC	3 cut(s)	528, 545, 591
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	7 cut(s)	34, 235, 286, 328, 409, 439, 596
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	3 cut(s)	106, 209, 613
Hpy188I	TCNGA	2 cut(s)	111, 186
Hpy188III	TCNNGA	2 cut(s)	442, 585
HpyAV	CCTTC	2 cut(s)	258, 518
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 25, 203, 410, 458, 588, 603
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	7 cut(s)	34, 235, 286, 328, 409, 439, 596
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	67, 114
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	4 cut(s)	272, 444, 518, 579
Lsp1109I	GCAGC	8 cut(s)	37, 50, 184, 298, 308, 316, 370, 522
LweI	GCATC	3 cut(s)	6, 12, 244
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	69, 116
MboI	GATC	2 cut(s)	67, 114
MboII	GAAGA	2 cut(s)	124, 330
MhlI	GDGCHC	2 cut(s)	277, 584
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	3 cut(s)	140, 476, 643
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	607
MnlI	CCTC	7 cut(s)	249, 410, 442, 458, 482, 531, 581
Mox20I	TGGCCA	1 cut(s)	545
Mph1103I	ATGCAT	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	1 cut(s)	646
Msp20I	TGGCCA	1 cut(s)	545
MspR9I	CCNGG	3 cut(s)	194, 270, 519
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	3 cut(s)	194, 270, 519
MwoI	GCNNNNNNNGC	7 cut(s)	16, 25, 203, 410, 458, 588, 603
NcoI	CCATGG	1 cut(s)	592
NdeII	GATC	2 cut(s)	67, 114
NlaIII	CATG	7 cut(s)	34, 235, 286, 328, 409, 439, 596
NmuCI	GTSAC	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	2 cut(s)	286, 439
PceI	AGGCCT	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	106, 209
PkrI	GCNGC	9 cut(s)	27, 40, 199, 288, 298, 331, 360, 512, 608
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	584
Psp6I	CCWGG	3 cut(s)	192, 268, 517
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	3 cut(s)	192, 268, 517
PstNI	CAGNNNCTG	1 cut(s)	13
RsaI	GTAC	4 cut(s)	83, 191, 245, 350
RsaNI	GTAC	4 cut(s)	82, 190, 244, 349
SacI	GAGCTC	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	9 cut(s)	26, 39, 198, 287, 297, 330, 359, 511, 607
Sau3AI	GATC	2 cut(s)	67, 114
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	3 cut(s)	194, 270, 519
SduI	GDGCHC	2 cut(s)	277, 584
SetI	ASST	9 cut(s)	15, 60, 174, 195, 301, 373, 515, 584, 624
SfaNI	GCATC	3 cut(s)	6, 12, 244
SfcI	CTRYAG	2 cut(s)	63, 173
Sse9I	AATT	3 cut(s)	140, 476, 643
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	597, 606
SstI	GAGCTC	1 cut(s)	584
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	3 cut(s)	192, 268, 517
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	60
TasI	AATT	3 cut(s)	140, 476, 643
TatI	WGTACW	2 cut(s)	81, 348
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	106, 209
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	3 cut(s)	259, 475, 553
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	8 cut(s)	25, 38, 197, 286, 296, 329, 358, 510
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	3 cut(s)	259, 475, 553
XagI	CCTNNNNNAGG	1 cut(s)	522
XceI	RCATGY	2 cut(s)	286, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
ZrmI	AGTACT	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.