Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Reverse (-)

1860141 .. 1862921

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG027900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGGCTATTATCCCAACAGTGTCACTACTGATCACATTCAACAGTATTTGGACGAGAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGGAAATTGAGTGAATGTGCAGAGAACCAAGCAAGGCTACAGCGAAATCTGATGTACCTTGCTGCCATTGCTGATTCCCAACCCCAACCTCCCACTATGCATCCTCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

81

Amino Acids

9.28

Weight (kDa)

5.79

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	19 - 74	4.7e-22	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	13
ApeKI	GCWGC	4 cut(s)	4, 7, 25, 197
ApoI	RAATTY	1 cut(s)	130
BbvI	GCAGC	4 cut(s)	16, 19, 37, 184
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	4 cut(s)	5, 8, 26, 198
BlsI	GCNGC	4 cut(s)	6, 9, 27, 199
BmsI	GCATC	2 cut(s)	6, 12
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	16, 19, 37, 184
BsgI	GTGCAG	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	201
BssMI	GATC	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	56, 81
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 25, 203
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	16, 19, 37, 184
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	28, 42, 126, 172
CviKI_1	RGCY	4 cut(s)	28, 42, 126, 172
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	237
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 233
FatI	CATG	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	5, 8, 26, 198
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	5, 8, 26, 198
GluI	GCNGC	4 cut(s)	5, 8, 26, 198
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	2 cut(s)	106, 209
Hpy188I	TCNGA	2 cut(s)	111, 186
HpyCH4III	ACNGT	2 cut(s)	56, 81
HpyCH4V	TGCA	5 cut(s)	4, 19, 25, 155, 235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 25, 203
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	4 cut(s)	24, 26, 120, 140
Lsp1109I	GCAGC	4 cut(s)	16, 19, 37, 184
LweI	GCATC	2 cut(s)	6, 12
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	124
MluCI	AATT	2 cut(s)	130, 140
MnlI	CCTC	1 cut(s)	234
Mph1103I	ATGCAT	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	16, 25, 203
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	106, 209
PkrI	GCNGC	4 cut(s)	6, 9, 27, 199
PstNI	CAGNNNCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	4 cut(s)	5, 8, 26, 198
Sau3AI	GATC	1 cut(s)	67
SetI	ASST	3 cut(s)	15, 195, 226
SfaNI	GCATC	2 cut(s)	6, 12
SfcI	CTRYAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	130, 140
TaaI	ACNGT	2 cut(s)	56, 81
TasI	AATT	2 cut(s)	130, 140
TfiI	GAWTC	2 cut(s)	106, 209
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	4 cut(s)	4, 7, 25, 197
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.