FvH4_6g02460

GRF1-interacting factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007926
Physical Location & Seq
Reverse (-)
1422102 .. 1427285
5184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02460.t1

Sequence Viewer

Length: 519 bp
ATGTTAGTGATTTCCTTGTGTGATTGTTACAGGAACCAAGCAAGGCTACAGCGAAATCTGATGTACCTTGCTGCCATTGCTGATTCCCAACCCCAACCTCCCACTATGCATCCTCAGTACCCTTCCGGTGGCATGATGCAACCAGGAGCAAGTTACATGCAGCAACAAGCAGCTCAACAGATGTCACCTCAATCTCTCATGGCTGCACGCAATTCCATGATGTACAACCAGCAGCCATTTTCAGCTATGCAACAGCAAGCCCTGCATAGCCAACTTGCCATGAGCTCTGGAGGAAGTGGGGGACTTCACATGCTCCAAAATGAGGCAAACAATGCAGGAGGCAGTGGACAACTTGGGGCTGGAGGATTTTCTGATTTTGGACGCGGAGAAGGCATGCATAGGAGGATGGGCAGTGGAAGTAAGCACGATCTTGGTTCTTCTGATGGTCGGGGTGGGAGCTCTGGAGGCCATGGTGGAGATGGGGGTGAGACTCTTTACTTGAAATCCGCTGATGATTAA

Protein Analysis

173

Amino Acids

18.06

Weight (kDa)

6.57

Isoelectric Point (pI)

65.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSXT PF05030 8 - 32 4.2e-06 SSXT protein (N-terminal region)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 384
AciI CCGC 2 cut(s) 384, 507
AfaI GTAC 3 cut(s) 65, 119, 224
AfiI CCNNNNNNNGG 2 cut(s) 128, 322
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 173, 245, 285, 459
AluI AGCT 4 cut(s) 173, 245, 285, 459
Alw21I GWGCWC 2 cut(s) 287, 461
Alw26I GTCTC 1 cut(s) 482
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 5 cut(s) 71, 160, 170, 203, 232
AsuHPI GGTGA 2 cut(s) 177, 497
BanII GRGCYC 2 cut(s) 287, 461
Bbv12I GWGCWC 2 cut(s) 287, 461
BbvI GCAGC 5 cut(s) 58, 172, 182, 190, 244
BccI CCATC 3 cut(s) 400, 437, 473
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 5 cut(s) 72, 161, 171, 204, 233
BlsI GCNGC 5 cut(s) 73, 162, 172, 205, 234
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 118, 126
BpmI CTGGAG 3 cut(s) 309, 381, 483
BsaJI CCNNGG 1 cut(s) 469
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 322
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 2 cut(s) 109, 411
BseLI CCNNNNNNNGG 2 cut(s) 128, 322
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 128
BseXI GCAGC 5 cut(s) 58, 172, 182, 190, 244
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 287, 461
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 128, 322
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 287, 461
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 427
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 2 cut(s) 384, 507
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 1 cut(s) 427
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 144
BstAPI GCANNNNNTGC 2 cut(s) 262, 332
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 208, 258, 395
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 109, 411
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 1 cut(s) 430
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 5 cut(s) 77, 262, 332, 390, 465
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 3 cut(s) 160, 313, 397
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 47
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 5 cut(s) 58, 172, 182, 190, 244
BsuRI GGCC 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 109, 411
BtsI GCAGTG 2 cut(s) 349, 418
BtsIMutI CAGTG 2 cut(s) 349, 418
Cac8I GCNNGC 3 cut(s) 208, 258, 395
CseI GACGC 1 cut(s) 390
Csp6I GTAC 3 cut(s) 64, 118, 223
CviAII CATG 8 cut(s) 133, 157, 199, 217, 280, 310, 394, 470
CviQI GTAC 3 cut(s) 64, 118, 223
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
Ecl136II GAGCTC 2 cut(s) 285, 459
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 287, 461
Eco53kI GAGCTC 2 cut(s) 285, 459
EcoICRI GAGCTC 2 cut(s) 285, 459
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 2 cut(s) 111, 399
EcoT38I GRGCYC 2 cut(s) 287, 461
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 8 cut(s) 136, 160, 202, 220, 283, 313, 397, 473
FaqI GGGAC 1 cut(s) 315
FatI CATG 8 cut(s) 132, 156, 198, 216, 279, 309, 393, 469
Fnu4HI GCNGC 5 cut(s) 72, 161, 171, 204, 233
FokI GGATG 2 cut(s) 96, 418
FriOI GRGCYC 2 cut(s) 287, 461
Fsp4HI GCNGC 5 cut(s) 72, 161, 171, 204, 233
GluI GCNGC 5 cut(s) 72, 161, 171, 204, 233
GsuI CTGGAG 3 cut(s) 309, 381, 483
HaeIII GGCC 1 cut(s) 468
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 390
Hin1II CATG 8 cut(s) 136, 160, 202, 220, 283, 313, 397, 473
HinfI GANTC 2 cut(s) 83, 490
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 177, 497
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 60, 373, 442
Hpy188III TCNNGA 2 cut(s) 288, 462
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 132, 383
HpyCH4V TGCA 8 cut(s) 109, 139, 160, 206, 250, 265, 335, 397
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 262, 332, 390, 465
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 8 cut(s) 136, 160, 202, 220, 283, 313, 397, 473
Kzo9I GATC 1 cut(s) 427
LmnI GCTCC 3 cut(s) 146, 318, 456
Lsp1109I GCAGC 5 cut(s) 58, 172, 182, 190, 244
LweI GCATC 2 cut(s) 118, 126
MaeIII GTNAC 3 cut(s) 26, 152, 183
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 287, 461
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 484
MnlI CCTC 9 cut(s) 108, 123, 198, 284, 316, 332, 356, 396, 458
Mph1103I ATGCAT 2 cut(s) 111, 399
MseI TTAA 1 cut(s) 517
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 5 cut(s) 77, 262, 332, 390, 465
NcoI CCATGG 1 cut(s) 469
NdeII GATC 1 cut(s) 427
NlaIII CATG 8 cut(s) 136, 160, 202, 220, 283, 313, 397, 473
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 183
NsiI ATGCAT 2 cut(s) 111, 399
NspI RCATGY 3 cut(s) 160, 313, 397
PaeI GCATGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 5 cut(s) 73, 162, 172, 205, 234
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 2 cut(s) 287, 461
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 35
RsaI GTAC 3 cut(s) 65, 119, 224
RsaNI GTAC 3 cut(s) 64, 118, 223
SacI GAGCTC 2 cut(s) 287, 461
SaqAI TTAA 1 cut(s) 517
SatI GCNGC 5 cut(s) 72, 161, 171, 204, 233
Sau3AI GATC 1 cut(s) 427
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 287, 461
SetI ASST 7 cut(s) 69, 100, 175, 190, 247, 287, 461
SfaNI GCATC 2 cut(s) 118, 126
SfcI CTRYAG 1 cut(s) 47
SphI GCATGC 1 cut(s) 397
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 384, 507
SstI GAGCTC 2 cut(s) 287, 461
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 469
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TscAI CASTG 2 cut(s) 349, 418
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 5 cut(s) 71, 160, 170, 203, 232
Tsp45I GTSAC 1 cut(s) 183
TspRI CASTG 2 cut(s) 349, 418
XceI RCATGY 3 cut(s) 160, 313, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
Zsp2I ATGCAT 2 cut(s) 111, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.