Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005298.1

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Forward (+)

6475 .. 6861

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005298.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgatgcaaccaggagcaaattacatgcagcaacaagcagctcaacagatgtcaccccaatcgctcatggctgcgcgctcttccatgatgtacaaccagcagccattttcagctctgcaacagcaagccctgcatagccaacttgccatgagctctggaggaagcgggggacttcacatgctccagaatgaggcaaataatgcaggaggcagtgggcaacttggggctggaggattttctgattttggacgtggggaaggcttgcataggaggatgggcagtgggagtaagcaagatcttggttcttctgatgggcggggcgggagctctggaggccatggcggagatgggggtgagactctttacttgaaatccgctgatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

128

Amino Acids

13.09

Weight (kDa)

6.02

Isoelectric Point (pI)

67.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	76
AciI	CCGC	5 cut(s)	165, 316, 321, 342, 375
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	4 cut(s)	41, 113, 153, 327
AluI	AGCT	4 cut(s)	41, 113, 153, 327
Alw21I	GWGCWC	2 cut(s)	155, 329
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	4 cut(s)	28, 38, 71, 100
AspLEI	GCGC	2 cut(s)	76, 78
AsuHPI	GGTGA	2 cut(s)	45, 365
BanII	GRGCYC	2 cut(s)	155, 329
Bbv12I	GWGCWC	2 cut(s)	155, 329
BbvI	GCAGC	4 cut(s)	40, 50, 58, 112
BccI	CCATC	3 cut(s)	268, 305, 341
BciT130I	CCWGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	4 cut(s)	29, 39, 72, 101
BlsI	GCNGC	4 cut(s)	30, 40, 73, 102
Bme1390I	CCNGG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	12
BpmI	CTGGAG	4 cut(s)	167, 177, 249, 351
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	190
BsePI	GCGCGC	1 cut(s)	74
BseXI	GCAGC	4 cut(s)	40, 50, 58, 112
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	336
BsiHKAI	GWGCWC	2 cut(s)	155, 329
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	155, 329
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	5 cut(s)	165, 316, 321, 342, 375
BspANI	GGCC	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	337
BssHII	GCGCGC	1 cut(s)	74
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	2 cut(s)	130, 200
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	76, 126, 263
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	76, 78
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 200, 333
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	2 cut(s)	28, 181
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	40, 50, 58, 112
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	2 cut(s)	217, 286
BtsIMutI	CAGTG	2 cut(s)	217, 286
Cac8I	GCNNGC	3 cut(s)	76, 126, 263
CfoI	GCGC	2 cut(s)	76, 78
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	6 cut(s)	25, 67, 85, 148, 178, 338
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	357
Ecl136II	GAGCTC	2 cut(s)	153, 327
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	155, 329
Eco53kI	GAGCTC	2 cut(s)	153, 327
EcoICRI	GAGCTC	2 cut(s)	153, 327
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	155, 329
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	6 cut(s)	28, 70, 88, 151, 181, 341
FaiI	YATR	8 cut(s)	26, 68, 86, 135, 149, 179, 267, 339
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	6 cut(s)	24, 66, 84, 147, 177, 337
FauI	CCCGC	3 cut(s)	158, 309, 314
Fnu4HI	GCNGC	4 cut(s)	29, 39, 72, 101
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	2 cut(s)	155, 329
Fsp4HI	GCNGC	4 cut(s)	29, 39, 72, 101
GlaI	GCGC	2 cut(s)	75, 77
GluI	GCNGC	4 cut(s)	29, 39, 72, 101
GsuI	CTGGAG	4 cut(s)	167, 177, 249, 351
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	2 cut(s)	76, 78
Hin1II	CATG	6 cut(s)	28, 70, 88, 151, 181, 341
Hin6I	GCGC	2 cut(s)	74, 76
HinP1I	GCGC	2 cut(s)	74, 76
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	2 cut(s)	45, 365
Hpy188I	TCNGA	2 cut(s)	241, 310
Hpy188III	TCNNGA	3 cut(s)	156, 184, 330
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	6 cut(s)	7, 28, 118, 133, 203, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 200, 333
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	6 cut(s)	28, 70, 88, 151, 181, 341
HspAI	GCGC	2 cut(s)	74, 76
Kzo9I	GATC	1 cut(s)	295
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	14, 186, 324
LpnPI	CCDG	8 cut(s)	24, 110, 141, 143, 189, 197, 213, 315
Lsp1109I	GCAGC	4 cut(s)	40, 50, 58, 112
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	72, 297
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	155, 329
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	6 cut(s)	152, 184, 200, 224, 264, 326
MseI	TTAA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	130, 200, 333
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	6 cut(s)	28, 70, 88, 151, 181, 341
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	2 cut(s)	28, 181
PauI	GCGCGC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	30, 40, 73, 102
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp124BI	GAGCTC	2 cut(s)	155, 329
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	295
PteI	GCGCGC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacI	GAGCTC	2 cut(s)	155, 329
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	4 cut(s)	29, 39, 72, 101
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	155, 329
SetI	ASST	5 cut(s)	43, 115, 155, 253, 329
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	5 cut(s)	165, 316, 321, 342, 375
SstI	GAGCTC	2 cut(s)	155, 329
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	337
TaiI	ACGT	1 cut(s)	253
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	2 cut(s)	217, 286
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	4 cut(s)	28, 38, 71, 100
Tsp45I	GTSAC	1 cut(s)	51
TspRI	CASTG	2 cut(s)	217, 286
XceI	RCATGY	2 cut(s)	28, 181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.