Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Reverse (-)

48553234 .. 48557747

Gene Structure 4514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGGCTATTATCCCAACAGTGTCACTACTGATCACATTCAACAGTATTTGGACGAGAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGGAAATTGAGTGAATGTGCAGAGAACCAAGCAAGGCTACAGCGAAATCTGATGTACCTTGCTGCCATTGCTGATTCCCAACCCCAACCTCCCACTATGCATCCTCAGTACCCTTCCGGTGGCATGATGCAACCAGGAGCAAATTACATGCAGCAACAAGCAGCTCAACAGATGTCACCCCAATCGCTTATGGCTGCGCGCTCTTCCATGATGTACAACCAGCAGCCATTTTCAGCTCTGCAACAGCAAGCCCTGCATAGCCAACTTGCCATGAGCTCTGGAGGAAGCGGGGGACTTCACATGCTCCAGAATGAGCCAAATAATGCAGGAGGCAGCGGGCAACTTGGGGCTGGAGGATTTTCTGATTTTGGACGTGGGGAAGGCTTGCATAGGAGGATGGGCAGTGGGAGTAAGCAAGATCTTGGTTCTTCTGATGGGCGGGGCGGGAGCTCTGGAGGCCATGGCGGAGATGGGGGTGAGACTCTGTACTTGAAATCCGCTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

214

Amino Acids

22.83

Weight (kDa)

5.93

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	19 - 74	4.9e-21	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	6 cut(s)	423, 471, 574, 579, 600, 633
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	4 cut(s)	191, 245, 350, 623
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	77, 628
AjiI	CACGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	4 cut(s)	299, 371, 411, 585
AluI	AGCT	4 cut(s)	299, 371, 411, 585
Alw21I	GWGCWC	2 cut(s)	413, 587
Alw26I	GTCTC	1 cut(s)	608
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	9 cut(s)	4, 7, 25, 197, 286, 296, 329, 358, 468
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	334, 336
AsuHPI	GGTGA	2 cut(s)	303, 623
BanII	GRGCYC	2 cut(s)	413, 587
Bbv12I	GWGCWC	2 cut(s)	413, 587
BbvI	GCAGC	9 cut(s)	16, 19, 37, 184, 298, 308, 316, 370, 480
BccI	CCATC	4 cut(s)	28, 526, 563, 599
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	9 cut(s)	5, 8, 26, 198, 287, 297, 330, 359, 469
BlsI	GCNGC	9 cut(s)	6, 9, 27, 199, 288, 298, 331, 360, 470
Bme1390I	CCNGG	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	6, 12, 244, 252
BpmI	CTGGAG	4 cut(s)	425, 435, 507, 609
BsaJI	CCNNGG	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	2 cut(s)	235, 537
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	254
BsePI	GCGCGC	1 cut(s)	332
BseXI	GCAGC	9 cut(s)	16, 19, 37, 184, 298, 308, 316, 370, 480
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	594
BsiHKAI	GWGCWC	2 cut(s)	413, 587
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	413, 587
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	67, 553
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	6 cut(s)	423, 471, 574, 579, 600, 633
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	595
BssHII	GCGCGC	1 cut(s)	332
BssMI	GATC	2 cut(s)	67, 553
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	56, 81
Bst6I	CTCTTC	1 cut(s)	343
BstAPI	GCANNNNNTGC	2 cut(s)	16, 388
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	5 cut(s)	40, 334, 384, 473, 521
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	2 cut(s)	235, 537
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	2 cut(s)	334, 336
BstKTI	GATC	2 cut(s)	70, 556
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	2 cut(s)	67, 553
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 25, 203, 388, 591
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	2 cut(s)	286, 439
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	9 cut(s)	16, 19, 37, 184, 298, 308, 316, 370, 480
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	595
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	235, 537
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	61, 544
Cac8I	GCNNGC	5 cut(s)	40, 334, 384, 473, 521
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	2 cut(s)	334, 336
Csp6I	GTAC	4 cut(s)	190, 244, 349, 622
CviAII	CATG	7 cut(s)	31, 259, 283, 343, 406, 436, 596
CviQI	GTAC	4 cut(s)	190, 244, 349, 622
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	69, 555
DpnII	GATC	2 cut(s)	67, 553
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	615
Ecl136II	GAGCTC	2 cut(s)	411, 585
Eco130I	CCWWGG	1 cut(s)	595
Eco24I	GRGCYC	2 cut(s)	413, 587
Eco53kI	GAGCTC	2 cut(s)	411, 585
Eco57I	CTGAAG	1 cut(s)	131
EcoICRI	GAGCTC	2 cut(s)	411, 585
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	413, 587
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	7 cut(s)	34, 262, 286, 346, 409, 439, 599
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	7 cut(s)	30, 258, 282, 342, 405, 435, 595
FauI	CCCGC	4 cut(s)	416, 464, 567, 572
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	9 cut(s)	5, 8, 26, 198, 287, 297, 330, 359, 469
FokI	GGATG	2 cut(s)	222, 544
FriOI	GRGCYC	2 cut(s)	413, 587
Fsp4HI	GCNGC	9 cut(s)	5, 8, 26, 198, 287, 297, 330, 359, 469
GlaI	GCGC	2 cut(s)	333, 335
GluI	GCNGC	9 cut(s)	5, 8, 26, 198, 287, 297, 330, 359, 469
GsuI	CTGGAG	4 cut(s)	425, 435, 507, 609
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	2 cut(s)	334, 336
Hin1II	CATG	7 cut(s)	34, 262, 286, 346, 409, 439, 599
Hin6I	GCGC	2 cut(s)	332, 334
HinP1I	GCGC	2 cut(s)	332, 334
HinfI	GANTC	3 cut(s)	106, 209, 616
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	303, 623
Hpy188I	TCNGA	4 cut(s)	111, 186, 499, 568
Hpy188III	TCNNGA	3 cut(s)	414, 442, 588
HpyAV	CCTTC	2 cut(s)	258, 509
HpyCH4III	ACNGT	2 cut(s)	56, 81
HpyCH4IV	ACGT	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 25, 203, 388, 591
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	7 cut(s)	34, 262, 286, 346, 409, 439, 599
HspAI	GCGC	2 cut(s)	332, 334
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 553
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	272, 444, 582
Lsp1109I	GCAGC	9 cut(s)	16, 19, 37, 184, 298, 308, 316, 370, 480
LweI	GCATC	4 cut(s)	6, 12, 244, 252
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	2 cut(s)	58, 309
MalI	GATC	2 cut(s)	69, 555
MboI	GATC	2 cut(s)	67, 553
MboII	GAAGA	3 cut(s)	124, 330, 555
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	413, 587
MluCI	AATT	3 cut(s)	130, 140, 277
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	7 cut(s)	234, 249, 410, 458, 482, 522, 584
Mph1103I	ATGCAT	1 cut(s)	237
MseI	TTAA	1 cut(s)	643
MspA1I	CMGCKG	2 cut(s)	471, 635
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	5 cut(s)	16, 25, 203, 388, 591
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	2 cut(s)	67, 553
NlaIII	CATG	7 cut(s)	34, 262, 286, 346, 409, 439, 599
NmuCI	GTSAC	2 cut(s)	58, 309
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	2 cut(s)	286, 439
PauI	GCGCGC	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	106, 209
PkrI	GCNGC	9 cut(s)	6, 9, 27, 199, 288, 298, 331, 360, 470
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	2 cut(s)	413, 587
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	553
PteI	GCGCGC	1 cut(s)	332
RsaI	GTAC	4 cut(s)	191, 245, 350, 623
RsaNI	GTAC	4 cut(s)	190, 244, 349, 622
SacI	GAGCTC	2 cut(s)	413, 587
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	9 cut(s)	5, 8, 26, 198, 287, 297, 330, 359, 469
Sau3AI	GATC	2 cut(s)	67, 553
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	413, 587
SetI	ASST	8 cut(s)	15, 195, 226, 301, 373, 413, 511, 587
SfaNI	GCATC	4 cut(s)	6, 12, 244, 252
SfcI	CTRYAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	130, 140, 277
SsiI	CCGC	6 cut(s)	423, 471, 574, 579, 600, 633
SstI	GAGCTC	2 cut(s)	413, 587
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	56, 81
TaiI	ACGT	1 cut(s)	511
TasI	AATT	3 cut(s)	130, 140, 277
TatI	WGTACW	2 cut(s)	348, 621
TfiI	GAWTC	2 cut(s)	106, 209
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	2 cut(s)	61, 544
TseFI	GTSAC	2 cut(s)	58, 309
TseI	GCWGC	9 cut(s)	4, 7, 25, 197, 286, 296, 329, 358, 468
Tsp45I	GTSAC	2 cut(s)	58, 309
TspRI	CASTG	2 cut(s)	61, 544
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	2 cut(s)	286, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.