Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007926

Physical Location & Seq

Genomic Coordinates Reverse (-)

1857930 .. 1862845

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTACCTTGCTGCCATTGCTGATTCCCAACCCCAACCTCCCACTATGCATCCTCAGTACCCTTCCGGTGGCATGATGCAACCAGGAGCAAATTACATGCAGCAACAAGCAGCTCAACAGATGTCACCCCAATCGCTCATGGCTGCGCGCTCTTCCATGATGTACAACCAGCAGCCATTTTCAGCTCTGCAACAGCAAGCCCTGCATAGCCAACTTGCCATGAGCTCTGGAGGAAGCGGGGGACTTCACATGCTCCAGAATGAGGCAAATAATGCAGGAGGCAGTGGGCAACTTGGGGCTGGAGGATTTTCTGATTTTGGACGTGGGGAAGGCTTGCATAGGAGGATGGGCAGCGGGAGTAAGCAAGATCTTGGTTCTTCTGATGGGCGGGGCGGGAGCTCTGGAGGCCATGGCGGAGATGGGGGTGAGACTCTTTACTTGAAATCTGCTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

152

Amino Acids

15.63

Weight (kDa)

5.87

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28640 AT5G28640 AT5G28640
fragaria_vesca	FvH4_6g02460 FvH4_6g02460 FvH4_6g02460 FvH4_6g02460
malus_domestica	MD04G1227900.v1.1 MD12G1244500.v1.1
prunus_persica	Prupe.6G346900_v2.0.a1 Prupe.6G346900_v2.0.a1
pyrus_communis	pycom04g20170 pycom12g22420
rosa_chinensis	RchiOBHm_Chr3g0450341
rosa_laevigata	RLG00000025739
rosa_multiflora	Rmu_sc0000330.1_g000001 Rmu_sc0005298.1_g000002 Rmu_sc0006063.1_g000002
rosa_roxburghii	Rroxscaffold_6G00428060
rosa_rugosa	Rorug02G0626800
rosa_samantha	Rh3AG027300 Rh3BG027900 Rh3DG027700
rosa_wichuraiana	Rw3G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	5 cut(s)	237, 354, 388, 393, 414
AfaI	GTAC	3 cut(s)	5, 59, 164
AfiI	CCNNNNNNNGG	2 cut(s)	68, 262
AgsI	TTSAA	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	113, 185, 225, 399
AluI	AGCT	4 cut(s)	113, 185, 225, 399
Alw21I	GWGCWC	2 cut(s)	227, 401
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	6 cut(s)	11, 100, 110, 143, 172, 351
AspLEI	GCGC	2 cut(s)	148, 150
AsuHPI	GGTGA	2 cut(s)	117, 437
BanII	GRGCYC	2 cut(s)	227, 401
Bbv12I	GWGCWC	2 cut(s)	227, 401
BbvI	GCAGC	5 cut(s)	112, 122, 130, 184, 363
BccI	CCATC	3 cut(s)	340, 377, 413
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	6 cut(s)	12, 101, 111, 144, 173, 352
BlsI	GCNGC	6 cut(s)	13, 102, 112, 145, 174, 353
Bme1390I	CCNGG	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	58, 66
BpmI	CTGGAG	4 cut(s)	239, 249, 321, 423
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 262
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	2 cut(s)	49, 351
BseLI	CCNNNNNNNGG	2 cut(s)	68, 262
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	68
BsePI	GCGCGC	1 cut(s)	146
BseXI	GCAGC	5 cut(s)	112, 122, 130, 184, 363
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	227, 401
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	68, 262
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	227, 401
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	367
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	5 cut(s)	237, 354, 388, 393, 414
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	409
BssHII	GCGCGC	1 cut(s)	146
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	157
BstAPI	GCANNNNNTGC	2 cut(s)	202, 272
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	148, 198, 335
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	49, 351
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	2 cut(s)	148, 150
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 202, 272, 405
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	100, 253
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	5 cut(s)	112, 122, 130, 184, 363
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	49, 351
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	148, 198, 335
CfoI	GCGC	2 cut(s)	148, 150
Csp6I	GTAC	3 cut(s)	4, 58, 163
CviAII	CATG	7 cut(s)	73, 97, 139, 157, 220, 250, 410
CviQI	GTAC	3 cut(s)	4, 58, 163
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	429
Ecl136II	GAGCTC	2 cut(s)	225, 399
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	227, 401
Eco53kI	GAGCTC	2 cut(s)	225, 399
EcoICRI	GAGCTC	2 cut(s)	225, 399
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	227, 401
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	7 cut(s)	76, 100, 142, 160, 223, 253, 413
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	7 cut(s)	72, 96, 138, 156, 219, 249, 409
FauI	CCCGC	4 cut(s)	230, 347, 381, 386
Fnu4HI	GCNGC	6 cut(s)	12, 101, 111, 144, 173, 352
FokI	GGATG	2 cut(s)	36, 358
FriOI	GRGCYC	2 cut(s)	227, 401
Fsp4HI	GCNGC	6 cut(s)	12, 101, 111, 144, 173, 352
GlaI	GCGC	2 cut(s)	147, 149
GluI	GCNGC	6 cut(s)	12, 101, 111, 144, 173, 352
GsuI	CTGGAG	4 cut(s)	239, 249, 321, 423
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	2 cut(s)	148, 150
Hin1II	CATG	7 cut(s)	76, 100, 142, 160, 223, 253, 413
Hin6I	GCGC	2 cut(s)	146, 148
HinP1I	GCGC	2 cut(s)	146, 148
HinfI	GANTC	2 cut(s)	23, 430
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	117, 437
Hpy188I	TCNGA	2 cut(s)	313, 382
Hpy188III	TCNNGA	3 cut(s)	228, 256, 402
HpyAV	CCTTC	2 cut(s)	72, 323
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	7 cut(s)	49, 79, 100, 190, 205, 275, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 202, 272, 405
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	7 cut(s)	76, 100, 142, 160, 223, 253, 413
HspAI	GCGC	2 cut(s)	146, 148
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	3 cut(s)	86, 258, 396
Lsp1109I	GCAGC	5 cut(s)	112, 122, 130, 184, 363
LweI	GCATC	2 cut(s)	58, 66
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	144, 369
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	227, 401
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	8 cut(s)	48, 63, 224, 256, 272, 296, 336, 398
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	4 cut(s)	17, 202, 272, 405
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	7 cut(s)	76, 100, 142, 160, 223, 253, 413
NmuCI	GTSAC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	2 cut(s)	100, 253
PauI	GCGCGC	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	6 cut(s)	13, 102, 112, 145, 174, 353
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp124BI	GAGCTC	2 cut(s)	227, 401
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	367
PteI	GCGCGC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	5, 59, 164
RsaNI	GTAC	3 cut(s)	4, 58, 163
SacI	GAGCTC	2 cut(s)	227, 401
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	6 cut(s)	12, 101, 111, 144, 173, 352
Sau3AI	GATC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	227, 401
SetI	ASST	7 cut(s)	9, 40, 115, 187, 227, 325, 401
SfaNI	GCATC	2 cut(s)	58, 66
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	5 cut(s)	237, 354, 388, 393, 414
SstI	GAGCTC	2 cut(s)	227, 401
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	409
TaiI	ACGT	1 cut(s)	325
TasI	AATT	1 cut(s)	91
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	6 cut(s)	11, 100, 110, 143, 172, 351
Tsp45I	GTSAC	1 cut(s)	123
TspRI	CASTG	1 cut(s)	289
XceI	RCATGY	2 cut(s)	100, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.