AT5G28750

Sec-independent protein translocase protein TATA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013462
Physical Location & Seq
Reverse (-)
10783974 .. 10785728
1755 bp
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UTR
Exon/CDS
Intron
AT5G28750.1

Sequence Viewer

Length: 444 bp
ATGGCGACATCTGTTGCGACTCTATCTTCTCCACCACCAGTATCTCTACCTCTCCTCTCATCATCTCGCTCTTCCTTCTTCTCCAATTGCTTCACAGTCACGACCCGACCAAACACTCGTTCTCTGGTAGCGATTGGACGCAGAATCCGACAAGAACCAACGAGAAAGCCACTGACTTGTAATGCTTTGTTTGGTCTCGGTGTGCCTGAGCTTGCTGTGATTGCTGGCGTCGCTGCGTTGCTTTTTGGACCTAAGAAACTTCCTGAGATTGGCAAGAGTATTGGCAAAACCGTCAAGAGCTTTCAACAGGCTGCAAAAGAGTTCGAGTCTGAGCTTAAGACAGAACCCGAAGAGTCTGTTGCAGAATCATCTCAGGTAGCAACGAGTAACAAAGAAGAGGAGAAAAAAACTGAGGTTTCTTCAAGCTCAAAGGAGAATGTATGA

Protein Analysis

147

Amino Acids

15.71

Weight (kDa)

9.23

Isoelectric Point (pI)

68.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatA_B_E PF02416 64 - 111 1e-17 mttA/Hcf106 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28750
fragaria_vesca FvH4_6g02920
malus_domestica MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica Prupe.6G343300_v2.0.a1
pyrus_communis pycom04g19780 pycom12g22090
rosa_chinensis RchiOBHm_Chr3g0451121
rosa_laevigata RLG00000025688
rosa_multiflora Rmu_ssc0000461.1_g000008
rosa_roxburghii Rroxscaffold_6G00428590
rosa_rugosa Rorug02G0631800
rosa_samantha Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana Rw3G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 269
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 305, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 4 cut(s) 211, 300, 334, 426
AluI AGCT 4 cut(s) 211, 300, 334, 426
Alw26I GTCTC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 233, 311
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 220, 298
BcoDI GTCTC 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 2 cut(s) 234, 312
BlsI GCNGC 2 cut(s) 235, 313
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 5 cut(s) 198, 255, 321, 386, 402
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 44, 413
BseXI GCAGC 2 cut(s) 220, 298
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
BspCNI CTCAG 5 cut(s) 199, 256, 322, 385, 403
BspQI GCTCTTC 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 97, 292
Bst6I CTCTTC 3 cut(s) 76, 345, 390
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 213, 226
BstDEI CTNAG 6 cut(s) 207, 252, 264, 330, 372, 411
BstMAI GTCTC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 221, 230
BstV1I GCAGC 2 cut(s) 220, 298
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 213, 226
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 2 cut(s) 147, 217
CviJI RGCY 6 cut(s) 169, 211, 300, 311, 334, 426
CviKI_1 RGCY 6 cut(s) 169, 211, 300, 311, 334, 426
DdeI CTNAG 6 cut(s) 207, 252, 264, 330, 372, 411
Eam1104I CTCTTC 3 cut(s) 76, 345, 390
EarI CTCTTC 3 cut(s) 76, 345, 390
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 248
FaiI YATR 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 234, 312
Fsp4HI GCNGC 2 cut(s) 234, 312
GluI GCNGC 2 cut(s) 234, 312
HgaI GACGC 2 cut(s) 147, 217
Hin1I GRCGYC 1 cut(s) 228
HinfI GANTC 5 cut(s) 19, 144, 326, 353, 365
Hpy188I TCNGA 2 cut(s) 149, 331
Hpy188III TCNNGA 3 cut(s) 100, 263, 295
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 97, 292
HpyCH4V TGCA 2 cut(s) 314, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 230
HpyF3I CTNAG 6 cut(s) 207, 252, 264, 330, 372, 411
Hsp92I GRCGYC 1 cut(s) 228
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 51, 110, 210, 219, 276, 293, 359
Lsp1109I GCAGC 2 cut(s) 220, 298
MaeIII GTNAC 2 cut(s) 97, 386
MboII GAAGA 6 cut(s) 18, 63, 70, 362, 407, 411
MfeI CAATTG 1 cut(s) 85
MluCI AATT 1 cut(s) 85
MlyI GAGTC 3 cut(s) 13, 335, 362
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 4 cut(s) 60, 65, 391, 406
MseI TTAA 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 335
MunI CAATTG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 221, 230
NmuCI GTSAC 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PfeI GAWTC 2 cut(s) 144, 365
PkrI GCNGC 2 cut(s) 235, 313
PleI GAGTC 3 cut(s) 13, 334, 361
PpsI GAGTC 3 cut(s) 13, 334, 361
PspPI GGNCC 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 234, 312
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 3 cut(s) 13, 335, 362
SetI ASST 8 cut(s) 52, 213, 253, 302, 336, 378, 417, 428
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 85
TaaI ACNGT 2 cut(s) 97, 292
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 85
TfiI GAWTC 2 cut(s) 144, 365
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 233, 311
Tsp45I GTSAC 1 cut(s) 97
TspRI CASTG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.