Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Forward (+)

30448891 .. 30451954

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1224600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGATTTCATCTTTTACTCTGTCCACTCCAAGATCCCCACTTTTTCTCCCTTCCCAATCATCCCAATCCACCTTCTTGACCAGCAATGGCACCACCTCTTTGTCCTTCAGCAAAAGCACTGTAAATGGCAGTGCTTTGGTTCTGAGCAGAAGAAGAACAAGGACTGAGAGAGCCCAGAAGGGTATGACGTGTACCGCTCTGTTTGGTCTTGGGATGCCGGAGCTTGTGGTTATAGCTGGTGTGGCGGCTCTGGTTTTTGGACCGAAGAAGCTGCCTGAAGTGGGGAAGAGTATTGGGAAAACTGTCAAGAGCTTCCAGCAGGCAGCAAAGGAGTTCGAGACAGAGCTTAAAAAAGAACCTGAGGGCCTCACAGAGACACCTACAGCGGCCAGTGAAGAAGAAAAACAAGATGCCAAGGTCGCAAGTTCACAGGAAAACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

149

Amino Acids

15.78

Weight (kDa)

9.13

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	69 - 116	8.1e-19	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	200
AciI	CCGC	3 cut(s)	198, 248, 389
AclWI	GGATC	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	94, 300
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	192
AluBI	AGCT	5 cut(s)	226, 239, 274, 315, 349
AluI	AGCT	5 cut(s)	226, 239, 274, 315, 349
Alw26I	GTCTC	2 cut(s)	335, 371
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	367, 390
ApeKI	GCWGC	2 cut(s)	274, 326
AspS9I	GGNCC	2 cut(s)	263, 367
AvaII	GGWCC	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	261, 338
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BcoDI	GTCTC	2 cut(s)	335, 371
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	4 cut(s)	249, 275, 327, 390
BlsI	GCNGC	4 cut(s)	250, 276, 328, 391
Bme18I	GGWCC	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	263, 367
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	207, 403
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	393
Bse21I	CCTNAGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	62, 222
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	137, 159, 354
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	261, 338
BshFI	GGCC	2 cut(s)	369, 392
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	335, 371
BsnI	GGCC	2 cut(s)	369, 392
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	3 cut(s)	198, 248, 389
BspANI	GGCC	2 cut(s)	369, 392
BspCNI	CTCAG	3 cut(s)	138, 160, 355
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	124, 307
Bst6I	CTCTTC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	146, 168, 363
BstF5I	GGATG	2 cut(s)	62, 222
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	2 cut(s)	335, 371
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 422
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	261, 338
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	369, 392
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	62, 222
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	120, 139, 400
Cac8I	GCNNGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	263, 367
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	444
CviJI	RGCY	9 cut(s)	176, 226, 239, 251, 274, 315, 349, 369, 392
CviKI_1	RGCY	9 cut(s)	176, 226, 239, 251, 274, 315, 349, 369, 392
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	3 cut(s)	146, 168, 363
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	94, 300
Eco81I	CCTNAGG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	447
FaiI	YATR	3 cut(s)	188, 236, 445
FatI	CATG	1 cut(s)	443
Fnu4HI	GCNGC	4 cut(s)	249, 275, 327, 390
FokI	GGATG	2 cut(s)	49, 229
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	249, 275, 327, 390
GluI	GCNGC	4 cut(s)	249, 275, 327, 390
HaeIII	GGCC	2 cut(s)	369, 392
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	447
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	27, 195, 431
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	79, 310, 340
Hpy8I	GTNNAC	3 cut(s)	27, 195, 431
HpyAV	CCTTC	4 cut(s)	63, 85, 118, 175
HpyCH4III	ACNGT	2 cut(s)	124, 307
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 422
HpyF3I	CTNAG	3 cut(s)	146, 168, 363
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	2 cut(s)	261, 338
LweI	GCATC	2 cut(s)	207, 403
MaeII	ACGT	1 cut(s)	191
MalI	GATC	1 cut(s)	37
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	1 cut(s)	35
MboII	GAAGA	6 cut(s)	165, 168, 280, 301, 410, 413
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	178
MnlI	CCTC	3 cut(s)	109, 358, 380
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	245, 422
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	447
NlaIV	GGNNCC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	250, 276, 328, 391
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	263, 367
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	249, 275, 327, 390
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	2 cut(s)	263, 367
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	207, 403
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	263
SsiI	CCGC	3 cut(s)	198, 248, 389
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	124, 307
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	339
TaqII	GACCGA	1 cut(s)	280
TauI	GCSGC	2 cut(s)	251, 392
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	3 cut(s)	127, 139, 400
TseI	GCWGC	2 cut(s)	274, 326
TspRI	CASTG	3 cut(s)	127, 139, 400
VpaK11BI	GGWCC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.