Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Reverse (-)

2298195 .. 2303800

Gene Structure 5606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGATCTCATCTTTAACTCTATCCACTCCAAGATTTCCACCTTCAGTTCCTTTCTCTTCATCCCAGTCCACCTTCTTGACCAACAATGGCAATACCAATTTGTTCATGACCAAAAACAAGGTCAACAGCAGGGGTTTGGTTGGGGGCAGGAGCAGAATCAGAACCAGAACTGAAAGAGCCAAGAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGGGTGCCTGAGCTTGCTGTTATTGCTGGGGTGGCTGCTCTGGTTTTTGGACCCAAGAAGTTACCTGAAGTGGGCAAGAGTTTAGGGAAGACTATCAAGAGCTTCCAACAGGCTGCAAAGGAGTTTGAGACAGAACTTAAAAAAGAACCTGAGCCTAATACAGAGGTTCTCACTGATGAACCTACCACGGTGAGTGAAGAACAAAAACCAGAAGTCAAGGTCCCAAGCTCCCAGGAAAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

154

Amino Acids

16.69

Weight (kDa)

9.59

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	71 - 118	3.5e-18	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	30, 306
AfiI	CCNNNNNNNGG	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	3 cut(s)	232, 321, 447
AluI	AGCT	3 cut(s)	232, 321, 447
Alw26I	GTCTC	2 cut(s)	197, 341
ApeKI	GCWGC	2 cut(s)	254, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspS9I	GGNCC	2 cut(s)	269, 439
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	269, 439
BanI	GGYRCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	241, 319
BciT130I	CCWGG	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	197, 341
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	255, 333
BlsI	GCNGC	2 cut(s)	256, 334
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	269, 439
BmgT120I	GGNCC	2 cut(s)	269, 439
BmiI	GGNNCC	3 cut(s)	225, 271, 441
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	228, 369
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	405, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	405, 450
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	219, 360
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	241, 319
BseYI	CCCAGC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	197, 341
BsmFI	GGGAC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	220, 361
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	225, 271, 441
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	405, 450
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	228, 369
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	197, 341
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	241, 319
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	269, 439
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	7 cut(s)	182, 232, 254, 321, 332, 373, 447
CviKI_1	RGCY	7 cut(s)	182, 232, 254, 321, 332, 373, 447
DdeI	CTNAG	2 cut(s)	228, 369
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	269, 439
Eco57I	CTGAAG	2 cut(s)	30, 306
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	450
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 463
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	255, 333
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	255, 333
GluI	GCNGC	2 cut(s)	255, 333
GsaI	CCCAGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	159
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	72, 127
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	79, 109, 316
Hpy8I	GTNNAC	2 cut(s)	72, 127
HpyAV	CCTTC	3 cut(s)	54, 85, 181
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
HpyF3I	CTNAG	2 cut(s)	228, 369
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	153, 452
Lsp1109I	GCAGC	2 cut(s)	241, 319
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	51, 319, 428
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	1 cut(s)	376
MseI	TTAA	2 cut(s)	17, 357
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	3 cut(s)	225, 271, 441
PagI	TCATGA	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	256, 334
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	3 cut(s)	225, 271, 441
PspPI	GGNCC	2 cut(s)	269, 439
PspPPI	RGGWCCY	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	17, 357
SatI	GCNGC	2 cut(s)	255, 333
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	269, 439
ScrFI	CCNGG	1 cut(s)	452
SinI	GGWCC	2 cut(s)	269, 439
Sse9I	AATT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	409
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	17, 357
Tru9I	TTAA	2 cut(s)	17, 357
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	2 cut(s)	254, 332
TspDTI	ATGAA	3 cut(s)	51, 97, 411
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	269, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.