Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Forward (+)

21419140 .. 21423181

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTAAGTCCAATCTATCGAATATTAGTTATTTTTAAAAATAATTTTCACCATTTAAATACCGTCCAATTTCCAGACCATCAACCATCCATGTGCAAATTCAACCATCCAATGTCCAATCTCTGGTCAATATTAATATTCAAAGGTCCCACCTTTACCTTATTTTTTTTATTTTCTTTTGGCTGGAGCCACCTTTCCCCTTCAATTTCATGTTATCCGATCTTCCACACCCCGAAACACACAAAATTCAACAAAATCCCCAATACCTTCAAGAACCCAGGAACCAAAAATCAGGTTAATAAGTTACCAAAAAAATTCATGGAGATTTCATCTTTTACTCTGTCCACTCCTAGATCCCCACTTTTTCTCCCTTCACAATCATCCCAATCCACCTTCTTGACCAGCAATGGCACCACCTCTTTGTCCTTCAGCAAAAGCACTGTAAATGGCAGTGCTTTGGTTCTGAGCAGAAGCAGAACAAGAACTGAGAGAGCCCAGAAGGGTATGACGTGTAACGCTCTGTTTGGTCTTGGGATGCCGGAGCTTGTGGTTATAGCTGGTGTGGCGGCTCTGGTTTTTGGACCCAAGAAGCTGCCTGAAGTGGGGAAGAGTATTGGGAAGACTGTCAAGAGCTTCCAGCAGGCAGCAAAGGAGTTCGAGACAGAGCTTAAAAAAGAACCTGAGGGCCTCACAGAGACACCTACAGCGGCGAGTGAAGAAGAAAAACAAGAAGCCAAGGTCGCAAGTTCACAGGAAAACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

255

Amino Acids

28.21

Weight (kDa)

9.78

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	2 cut(s)	566, 707
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	3 cut(s)	98, 245, 314
AcuI	CTGAAG	2 cut(s)	412, 618
AfiI	CCNNNNNNNGG	2 cut(s)	123, 602
AflIII	ACRYGT	1 cut(s)	509
AgsI	TTSAA	5 cut(s)	103, 142, 204, 250, 271
AjiI	CACGTC	1 cut(s)	510
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	5 cut(s)	544, 557, 592, 633, 667
AluI	AGCT	5 cut(s)	544, 557, 592, 633, 667
Alw26I	GTCTC	2 cut(s)	653, 689
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	592, 644
ApoI	RAATTY	3 cut(s)	98, 245, 314
AseI	ATTAAT	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	146, 581, 685
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	146, 581
AxyI	CCTNAGG	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	579, 656
BccI	CCATC	3 cut(s)	87, 94, 114
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	653, 689
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	4 cut(s)	567, 593, 645, 708
BlsI	GCNGC	4 cut(s)	568, 594, 646, 709
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	146, 581
BmgBI	CACGTC	1 cut(s)	510
BmgT120I	GGNCC	3 cut(s)	146, 581, 685
BmiI	GGNNCC	5 cut(s)	148, 188, 283, 412, 583
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	277, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 602
Bse21I	CCTNAGG	1 cut(s)	681
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	277, 735
BseGI	GGATG	4 cut(s)	86, 106, 380, 540
BseLI	CCNNNNNNNGG	2 cut(s)	123, 602
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	455, 477, 672
BseXI	GCAGC	2 cut(s)	579, 656
BshFI	GGCC	1 cut(s)	687
BshNI	GGYRCC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	123, 602
BsmAI	GTCTC	2 cut(s)	653, 689
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	219, 353
BspACI	CCGC	2 cut(s)	566, 707
BspANI	GGCC	1 cut(s)	687
BspCNI	CTCAG	3 cut(s)	456, 478, 673
BspLI	GGNNCC	5 cut(s)	148, 188, 283, 412, 583
BspPI	GGATC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	277, 735
BssMI	GATC	2 cut(s)	219, 353
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	64, 442, 625
Bst6I	CTCTTC	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	464, 486, 681
BstF5I	GGATG	4 cut(s)	86, 106, 380, 540
BstKTI	GATC	2 cut(s)	222, 356
BstMAI	GTCTC	2 cut(s)	653, 689
BstMBI	GATC	2 cut(s)	219, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 740
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	579, 656
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	510
BtsCI	GGATG	4 cut(s)	86, 106, 380, 540
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	438, 457
Cac8I	GCNNGC	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	146, 581, 685
CviAII	CATG	4 cut(s)	91, 210, 319, 762
DdeI	CTNAG	3 cut(s)	464, 486, 681
DpnI	GATC	2 cut(s)	221, 355
DpnII	GATC	2 cut(s)	219, 353
DraI	TTTAAA	2 cut(s)	37, 57
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	496
Eco47I	GGWCC	2 cut(s)	146, 581
Eco57I	CTGAAG	2 cut(s)	412, 618
Eco81I	CCTNAGG	1 cut(s)	681
EcoO109I	RGGNCCY	2 cut(s)	146, 685
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	4 cut(s)	94, 213, 322, 765
FaiI	YATR	6 cut(s)	92, 211, 320, 506, 554, 763
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	4 cut(s)	90, 209, 318, 761
Fnu4HI	GCNGC	4 cut(s)	567, 593, 645, 708
FokI	GGATG	4 cut(s)	73, 93, 367, 547
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	4 cut(s)	567, 593, 645, 708
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	4 cut(s)	567, 593, 645, 708
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	4 cut(s)	94, 213, 322, 765
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	345, 749
Hpy188I	TCNGA	2 cut(s)	219, 465
Hpy188III	TCNNGA	5 cut(s)	74, 271, 397, 628, 658
Hpy8I	GTNNAC	2 cut(s)	345, 749
HpyAV	CCTTC	6 cut(s)	210, 277, 381, 403, 436, 493
HpyCH4III	ACNGT	3 cut(s)	64, 442, 625
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 740
HpyF3I	CTNAG	3 cut(s)	464, 486, 681
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	4 cut(s)	94, 213, 322, 765
Kzo9I	GATC	2 cut(s)	219, 353
LmnI	GCTCC	2 cut(s)	186, 541
Lsp1109I	GCAGC	2 cut(s)	579, 656
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	303, 512
MalI	GATC	2 cut(s)	221, 355
MboI	GATC	2 cut(s)	219, 353
MboII	GAAGA	5 cut(s)	214, 619, 631, 728, 731
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	6 cut(s)	43, 68, 98, 204, 245, 314
MnlI	CCTC	3 cut(s)	427, 676, 698
MseI	TTAA	6 cut(s)	5, 36, 56, 134, 297, 669
MslI	CAYNNNNRTG	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	563, 740
NdeII	GATC	2 cut(s)	219, 353
NlaIII	CATG	4 cut(s)	94, 213, 322, 765
NlaIV	GGNNCC	5 cut(s)	148, 188, 283, 412, 583
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	568, 594, 646, 709
PpuMI	RGGWCCY	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	5 cut(s)	148, 188, 283, 412, 583
PspPI	GGNCC	3 cut(s)	146, 581, 685
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	6 cut(s)	5, 36, 56, 134, 297, 669
SatI	GCNGC	4 cut(s)	567, 593, 645, 708
Sau3AI	GATC	2 cut(s)	219, 353
Sau96I	GGNCC	3 cut(s)	146, 581, 685
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	2 cut(s)	146, 581
SmiI	ATTTAAAT	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	91
Sse9I	AATT	6 cut(s)	43, 68, 98, 204, 245, 314
SsiI	CCGC	2 cut(s)	566, 707
SspI	AATATT	3 cut(s)	24, 132, 138
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	735
SwaI	ATTTAAAT	1 cut(s)	57
TaaI	ACNGT	3 cut(s)	64, 442, 625
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	19, 657
TasI	AATT	6 cut(s)	43, 68, 98, 204, 245, 314
TauI	GCSGC	2 cut(s)	569, 710
Tru1I	TTAA	6 cut(s)	5, 36, 56, 134, 297, 669
Tru9I	TTAA	6 cut(s)	5, 36, 56, 134, 297, 669
TscAI	CASTG	2 cut(s)	445, 457
TseI	GCWGC	2 cut(s)	592, 644
TspDTI	ATGAA	3 cut(s)	198, 307, 318
TspRI	CASTG	2 cut(s)	445, 457
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	146, 581
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	3 cut(s)	98, 245, 314
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.