Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Reverse (-)

2225283 .. 2228462

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTATCTAATCCTTCGCAGTTTAAAAACACACAAATTCAACCGAAAGCTCCAAAATCTCCAAAACCCACAAACCAAAAGTTAGAAGCAGAAATGGAGATCTCATCTTTAACTCTATCCACTCCAAGATTTCCACCTTCAGTTCCTTTCTCTTCATCCCAGTCCACCTTCTTGATCAACAATGGCGGCACCAATTTGTTCATGACCAAAAACAAGGTCAACAGCAGGGGTTTGATTGGGGGCAGGAGCAGAATCAGAACCAGAACTGAAAGAGCCAAGAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGGGTGCCTGAGCTTGCTGTTATTGCTGGGGTGGCTGCTCTGGTTTTTGGACCCAAGAAGTTACCTGAAGTGGGCAAGAGTTTAGGGAAGACTATCAAGAGCTTCCAACAGGCTGCAAAGGAGTTTGAGACAGAACTTAAAAAAGAACCTGAGCCTAATACAGAGGTTCTCACCGATGAACCTACCACGGTGAGTGAAGAACAAAAACCAGAAGTCAAGGTCCCAAGCTCCCAGGAAAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

185

Amino Acids

20.12

Weight (kDa)

9.74

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	102 - 149	5e-18	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 316
AciI	CCGC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	123, 399
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	4 cut(s)	50, 325, 414, 540
AluI	AGCT	4 cut(s)	50, 325, 414, 540
Alw26I	GTCTC	2 cut(s)	290, 434
ApeKI	GCWGC	2 cut(s)	347, 425
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspS9I	GGNCC	2 cut(s)	362, 532
AsuHPI	GGTGA	2 cut(s)	475, 514
AvaII	GGWCC	2 cut(s)	362, 532
BanI	GGYRCC	2 cut(s)	188, 316
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	334, 412
BciT130I	CCWGG	1 cut(s)	545
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	290, 434
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	3 cut(s)	187, 348, 426
BlsI	GCNGC	3 cut(s)	188, 349, 427
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	2 cut(s)	362, 532
BmgT120I	GGNCC	2 cut(s)	362, 532
BmiI	GGNNCC	4 cut(s)	190, 318, 364, 534
BmrFI	CCNGG	1 cut(s)	545
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	407
Bpu10I	CCTNAGC	2 cut(s)	321, 462
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	498, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	498, 543
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	312, 453
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	334, 412
BseYI	CCCAGC	1 cut(s)	338
BshNI	GGYRCC	2 cut(s)	188, 316
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	290, 434
BsmFI	GGGAC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	99, 174
BspACI	CCGC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	313, 454
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	190, 318, 364, 534
BspT107I	GGYRCC	2 cut(s)	188, 316
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	498, 543
BssMI	GATC	2 cut(s)	99, 174
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	321, 462
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	102, 177
BstMAI	GTCTC	2 cut(s)	290, 434
BstMBI	GATC	2 cut(s)	99, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 344
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	334, 412
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	327
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	362, 532
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	8 cut(s)	50, 275, 325, 347, 414, 425, 466, 540
CviKI_1	RGCY	8 cut(s)	50, 275, 325, 347, 414, 425, 466, 540
DdeI	CTNAG	2 cut(s)	321, 462
DpnI	GATC	2 cut(s)	101, 176
DpnII	GATC	2 cut(s)	99, 174
DraI	TTTAAA	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	362, 532
Eco57I	CTGAAG	2 cut(s)	123, 399
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	543
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	203, 556
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	187, 348, 426
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	187, 348, 426
GluI	GCNGC	3 cut(s)	187, 348, 426
GsaI	CCCAGC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	2 cut(s)	475, 514
Hpy166II	GTNNAC	2 cut(s)	165, 220
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	3 cut(s)	172, 202, 409
Hpy8I	GTNNAC	2 cut(s)	165, 220
HpyAV	CCTTC	4 cut(s)	24, 147, 178, 274
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 344
HpyF3I	CTNAG	2 cut(s)	321, 462
Hsp92II	CATG	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	99, 174
LmnI	GCTCC	3 cut(s)	55, 246, 545
Lsp1109I	GCAGC	2 cut(s)	334, 412
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	2 cut(s)	101, 176
MboI	GATC	2 cut(s)	99, 174
MboII	GAAGA	3 cut(s)	144, 412, 521
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	2 cut(s)	36, 193
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	1 cut(s)	469
MseI	TTAA	3 cut(s)	24, 110, 450
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	335, 344
NdeII	GATC	2 cut(s)	99, 174
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	4 cut(s)	190, 318, 364, 534
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	188, 349, 427
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	4 cut(s)	190, 318, 364, 534
PspPI	GGNCC	2 cut(s)	362, 532
PspPPI	RGGWCCY	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	24, 110, 450
SatI	GCNGC	3 cut(s)	187, 348, 426
Sau3AI	GATC	2 cut(s)	99, 174
Sau96I	GGNCC	2 cut(s)	362, 532
ScrFI	CCNGG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	362, 532
Sse9I	AATT	2 cut(s)	36, 193
SsiI	CCGC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	502
TasI	AATT	2 cut(s)	36, 193
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	3 cut(s)	24, 110, 450
Tru9I	TTAA	3 cut(s)	24, 110, 450
TseI	GCWGC	2 cut(s)	347, 425
TspDTI	ATGAA	3 cut(s)	144, 190, 504
VpaK11BI	GGWCC	2 cut(s)	362, 532
XapI	RAATTY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.