Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Reverse (-)

12705024 .. 12705227

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1158600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGCAAAAGCAGAACGAGAACCGAGAGAGCCCAAAAGGGTATGATGTGTAACGCTCTGTTTAGTCTGGGGATGCCGGAGTTTGTGGTTATAGCCGGTGTGGAGGCTCTGGTTTTTGGGCCCAAGAAGTTACATGAAGTGGGGAAGAGTATTGGGAAGACTGTCAAGAGCTTCCAGAAGAGGCAAGAATTCATCTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

68

Amino Acids

7.48

Weight (kDa)

10.22

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	21 - 60	3e-12	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	188
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
AoxI	GGCC	1 cut(s)	119
ApaI	GGGCCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	119, 120
BaeGI	GKGCMC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	34, 123
BbsI	GAAGAC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	119, 120
BmiI	GGNNCC	1 cut(s)	121
BmsI	GCATC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	95
BseGI	GGATG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	123
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	77, 96
BsnI	GGCC	1 cut(s)	121
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	34, 123
BspANI	GGCC	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	140, 173
BstF5I	GGATG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	119, 120
CviAII	CATG	2 cut(s)	134, 201
CviJI	RGCY	5 cut(s)	32, 95, 107, 121, 171
CviKI_1	RGCY	5 cut(s)	32, 95, 107, 121, 171
Eam1104I	CTCTTC	2 cut(s)	140, 173
EarI	CTCTTC	2 cut(s)	140, 173
Eco24I	GRGCYC	2 cut(s)	34, 123
EcoRI	GAATTC	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	34, 123
FaeI	CATG	2 cut(s)	137, 204
FaiI	YATR	4 cut(s)	44, 92, 135, 202
FatI	CATG	2 cut(s)	133, 200
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	2 cut(s)	34, 123
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	77, 96
Hin1II	CATG	2 cut(s)	137, 204
HpaII	CCGG	2 cut(s)	77, 96
Hpy188III	TCNNGA	2 cut(s)	166, 175
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	137, 204
LpnPI	CCDG	5 cut(s)	53, 90, 95, 109, 188
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	50, 129
MboII	GAAGA	3 cut(s)	157, 169, 190
MhlI	GDGCHC	2 cut(s)	34, 123
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	2 cut(s)	97, 174
MspI	CCGG	2 cut(s)	77, 96
NlaIII	CATG	2 cut(s)	137, 204
NlaIV	GGNNCC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	121
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	119, 120
Sau96I	GGNCC	2 cut(s)	119, 120
SduI	GDGCHC	2 cut(s)	34, 123
SetI	ASST	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	63
Sse9I	AATT	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	150, 181
XapI	RAATTY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.