Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Forward (+)

31310138 .. 31313042

Gene Structure 2905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1241300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGATATCATCTTTTACTCTGTCCACTCCAAGATCCCCACTTTTTCTCCCTTTCCAATCGTCCCAATCCACCTTCTTGTCCAGCAATGGCACCACCTCTTTGTCCTTCAGCAAAAGCACTGTCAGTGGCAGTGCTTTGGTTCTGAGCAGAAGCAGAACGAGAACCGAGAGAGCCCAGAAGGGTATGACGTGTAACGCTCTGTTTGGTCTGGGGATGCCGGAGCTTGTGGTTATAGCCGGTGTGGCGGCTCTGGTTTTTGGGCCCAAGAAGTTGCCTGAAGTGGGGAAGAGTATTGGGAAGACTGTCAAGAGCTTCCAGCAGATTGTTGATTATTGTGGAGTTGCAGCAAAGGAGTTCGAGACAGAGCTTAAAAAAGAACCCGAGGGCCTCACAGAGACACCGACCGCGGTGAGTGAAGAAGAAAAACAAGAAGCCAAGGTCCCAAGCTCACAGGAAAACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

156

Amino Acids

16.56

Weight (kDa)

7.72

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	69 - 110	5.7e-16	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	1 cut(s)	410
AciI	CCGC	3 cut(s)	248, 408, 410
AclWI	GGATC	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	94, 300
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	192
AluBI	AGCT	4 cut(s)	226, 315, 370, 450
AluI	AGCT	4 cut(s)	226, 315, 370, 450
Alw26I	GTCTC	2 cut(s)	356, 392
AlwI	GGATC	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	263, 388
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspS9I	GGNCC	4 cut(s)	263, 264, 388, 442
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	178, 267
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	356, 392
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	249, 348
BlsI	GCNGC	2 cut(s)	250, 349
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	4 cut(s)	263, 264, 388, 442
BmiI	GGNNCC	3 cut(s)	94, 265, 444
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	384, 408, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	384, 408, 438
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	265, 390
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	221, 240
BslFI	GGGAC	2 cut(s)	49, 428
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	356, 392
BsmFI	GGGAC	2 cut(s)	49, 428
BsnI	GGCC	2 cut(s)	265, 390
BsoBI	CYCGRG	1 cut(s)	383
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	178, 267
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	3 cut(s)	248, 408, 410
BspANI	GGCC	2 cut(s)	265, 390
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	94, 265, 444
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	384, 408, 438
BssMI	GATC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	124, 307
Bst6I	CTCTTC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	2 cut(s)	356, 392
BstMBI	GATC	1 cut(s)	35
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	265, 390
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	120, 133, 139
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	4 cut(s)	263, 264, 388, 442
Cfr42I	CCGCGG	1 cut(s)	411
CviAII	CATG	1 cut(s)	465
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	178, 267
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	2 cut(s)	94, 300
Eco88I	CYCGRG	1 cut(s)	383
EcoO109I	RGGNCCY	2 cut(s)	388, 442
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	178, 267
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	1 cut(s)	468
FaiI	YATR	3 cut(s)	188, 236, 466
FaqI	GGGAC	2 cut(s)	49, 428
FatI	CATG	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	249, 348
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	2 cut(s)	178, 267
Fsp4HI	GCNGC	2 cut(s)	249, 348
GluI	GCNGC	2 cut(s)	249, 348
HaeIII	GGCC	2 cut(s)	265, 390
HapII	CCGG	2 cut(s)	221, 240
Hin1II	CATG	1 cut(s)	468
HpaII	CCGG	2 cut(s)	221, 240
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	310, 361
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	85, 118, 175
HpyCH4III	ACNGT	2 cut(s)	124, 307
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	468
KspI	CCGCGG	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	97, 191, 197, 234, 239, 253, 291, 332, 440
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	4 cut(s)	301, 313, 431, 434
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	178, 267
MnlI	CCTC	3 cut(s)	109, 379, 401
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	221, 240
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	468
NlaIV	GGNNCC	3 cut(s)	94, 265, 444
PkrI	GCNGC	2 cut(s)	250, 349
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	94, 265, 444
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	263, 264, 388, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	35
SacII	CCGCGG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	249, 348
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	4 cut(s)	263, 264, 388, 442
SduI	GDGCHC	2 cut(s)	178, 267
SetI	ASST	8 cut(s)	77, 101, 194, 228, 317, 372, 444, 452
SfaNI	GCATC	1 cut(s)	207
Sfr303I	CCGCGG	1 cut(s)	411
SgrBI	CCGCGG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	442
SsiI	CCGC	3 cut(s)	248, 408, 410
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	124, 307
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	360
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	3 cut(s)	127, 133, 139
TseI	GCWGC	1 cut(s)	347
TspRI	CASTG	3 cut(s)	127, 133, 139
VpaK11BI	GGWCC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.