Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Reverse (-)

1645464 .. 1648004

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGATCTCATCTCTAACTCTATCCACTCCAAGATCTCCACCTTCAGTTCCTTTCGCTTCATCCCAGTCCATGTTCTTGACCAACAATGGCACCACCAATTTGTTCATGACCAGAAACAAGGTCAACATCAGTGGTTTGGTTCTGGGCAGGAGCAGAACTGAGAGAGCCAGGAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGGGTCCCTGAGCTTGCTGTTATTGCTGGTGTGGCTGCTCTGGTTTTTGGGCCCAAGAAGTTGCCTGAAGTTGGGAAGAGTTTAGGGAAGACTATCAAGAGCTTCCAACAGGCTGCAAAGGAGTTTGAGACAGAACTTAAAAAAGAACCTGAGCCTAATACAGAGGTTCTCACTGATGAACCTACAACAGTGAGTGAAGAACAAAAACCAGAAGTCAAGGTCCCAAGCTCACAGGAAAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

151

Amino Acids

16.18

Weight (kDa)

9.1

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	67 - 114	3.3e-18	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AcuI	CTGAAG	2 cut(s)	30, 294
AfiI	CCNNNNNNNGG	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	3 cut(s)	220, 309, 435
AluI	AGCT	3 cut(s)	220, 309, 435
Alw26I	GTCTC	2 cut(s)	185, 329
AoxI	GGCC	1 cut(s)	257
ApaI	GGGCCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	242, 320
AspS9I	GGNCC	4 cut(s)	211, 257, 258, 427
AvaII	GGWCC	2 cut(s)	211, 427
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	229, 307
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	185, 329
BglII	AGATCT	2 cut(s)	6, 35
BisI	GCNGC	2 cut(s)	243, 321
BlsI	GCNGC	2 cut(s)	244, 322
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	2 cut(s)	211, 427
BmgT120I	GGNCC	4 cut(s)	211, 257, 258, 427
BmiI	GGNNCC	5 cut(s)	94, 212, 213, 259, 429
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	302
Bpu10I	CCTNAGC	2 cut(s)	216, 357
BsaI	GGTCTC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	3 cut(s)	153, 207, 348
BseNI	ACTGG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	229, 307
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	197, 413
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	185, 329
BsmFI	GGGAC	2 cut(s)	197, 413
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	185
Bsp120I	GGGCCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	6, 35
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	154, 208, 349
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	5 cut(s)	94, 212, 213, 259, 429
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	6, 35
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	162, 216, 357
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	9, 38
BstMAI	GTCTC	2 cut(s)	185, 329
BstMBI	GATC	2 cut(s)	6, 35
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	229, 307
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	6, 35
BstYI	RGATCY	2 cut(s)	6, 35
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	3 cut(s)	139, 378, 402
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	4 cut(s)	211, 257, 258, 427
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	2 cut(s)	73, 109
CviJI	RGCY	8 cut(s)	170, 220, 242, 259, 309, 320, 361, 435
CviKI_1	RGCY	8 cut(s)	170, 220, 242, 259, 309, 320, 361, 435
DdeI	CTNAG	3 cut(s)	162, 216, 357
DpnI	GATC	2 cut(s)	8, 37
DpnII	GATC	2 cut(s)	6, 35
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	211, 427
Eco57I	CTGAAG	2 cut(s)	30, 294
EcoO109I	RGGNCCY	2 cut(s)	211, 427
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	2 cut(s)	76, 112
FaiI	YATR	3 cut(s)	74, 110, 451
FaqI	GGGAC	2 cut(s)	197, 413
FatI	CATG	2 cut(s)	72, 108
Fnu4HI	GCNGC	2 cut(s)	243, 321
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	243, 321
GluI	GCNGC	2 cut(s)	243, 321
HaeIII	GGCC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	76, 112
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	79, 109, 304
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	54, 169
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	3 cut(s)	162, 216, 357
Hsp92II	CATG	2 cut(s)	76, 112
KflI	GGGWCCC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	6, 35
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	229, 307
MalI	GATC	2 cut(s)	8, 37
MboI	GATC	2 cut(s)	6, 35
MboII	GAAGA	3 cut(s)	295, 307, 416
MflI	RGATCY	2 cut(s)	6, 35
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	1 cut(s)	364
MseI	TTAA	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NdeII	GATC	2 cut(s)	6, 35
NlaIII	CATG	2 cut(s)	76, 112
NlaIV	GGNNCC	5 cut(s)	94, 212, 213, 259, 429
PagI	TCATGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	244, 322
PpuMI	RGGWCCY	2 cut(s)	211, 427
Psp5II	RGGWCCY	2 cut(s)	211, 427
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	5 cut(s)	94, 212, 213, 259, 429
PspOMI	GGGCCC	1 cut(s)	257
PspPI	GGNCC	4 cut(s)	211, 257, 258, 427
PspPPI	RGGWCCY	2 cut(s)	211, 427
PsuI	RGATCY	2 cut(s)	6, 35
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	243, 321
Sau3AI	GATC	2 cut(s)	6, 35
Sau96I	GGNCC	4 cut(s)	211, 257, 258, 427
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	46, 126, 222, 311, 358, 375, 391, 429, 437
SinI	GGWCC	2 cut(s)	211, 427
Sse9I	AATT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	397
TasI	AATT	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	3 cut(s)	139, 385, 402
TseI	GCWGC	2 cut(s)	242, 320
TspDTI	ATGAA	3 cut(s)	51, 97, 399
TspRI	CASTG	3 cut(s)	139, 385, 402
VpaK11BI	GGWCC	2 cut(s)	211, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.