Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013462

Physical Location & Seq

Genomic Coordinates Forward (+)

23112218 .. 23114660

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGATTTCATCTTTTACTCTGTCCACTCCAAGATCACCACTTTTTCTCCCTTTCCAATCATCCCAATCCACCTTCTTGTCCAGCAATGGCACCACCTCTTTGTCCTTCAGCAAAAGCACTGTCAATGACAGTGCTTTTGGTCTGAGAAGAAGCAGAACGAGAACCGAGAGAGCCCAGAAGGGTATGACGTGTAACGCTCTGTTTGGTCTGGGGATGCCGGAGATTGTGGTTATAGCTGGTGTGGCGGCTCTGGTTTTTGGGCCCAAGAAGTTGCCTGAAGTGGGGAAGAGCATTGGGAAGACTGTCAAGAGCTTCCAGCAGGCAGCAAAGGAGTTCGAGACAGAGCTTAAAAAGGAACCCGAGGGCCTCACAGAGACACCTACAGCGGTGAGTGAAGAAGAAAAACAAGAAGCCAAGGTCGCAATCTCACAGGAAAACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

149

Amino Acids

15.95

Weight (kDa)

8.76

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28750
fragaria_vesca	FvH4_6g02920
malus_domestica	MD04G1224600.v1.1 MD12G1241300.v1.1 MD16G1158600.v1.1
prunus_persica	Prupe.6G343300_v2.0.a1
pyrus_communis	pycom04g19780 pycom12g22090
rosa_chinensis	RchiOBHm_Chr3g0451121
rosa_laevigata	RLG00000025688
rosa_multiflora	Rmu_ssc0000461.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428590
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034500 Rh3BG034800 Rh3CG033500 Rh3DG034500
rosa_wichuraiana	Rw3G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	2 cut(s)	248, 389
AcuI	CTGAAG	2 cut(s)	94, 300
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	192
AluBI	AGCT	3 cut(s)	239, 315, 349
AluI	AGCT	3 cut(s)	239, 315, 349
Alw26I	GTCTC	2 cut(s)	335, 371
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	2 cut(s)	263, 367
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	326
ArsI	GACNNNNNNTTYG	4 cut(s)	108, 122, 140, 154
AspS9I	GGNCC	3 cut(s)	263, 264, 367
AsuHPI	GGTGA	2 cut(s)	30, 403
AvaI	CYCGRG	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	178, 267
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	335, 371
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	249, 327
BlsI	GCNGC	2 cut(s)	250, 328
BmeT110I	CYCGRG	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	263, 264, 367
BmiI	GGNNCC	3 cut(s)	94, 265, 360
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	363, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	363, 417
BseGI	GGATG	2 cut(s)	62, 222
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	2 cut(s)	265, 369
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	335, 371
BsnI	GGCC	2 cut(s)	265, 369
BsoBI	CYCGRG	1 cut(s)	362
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	178, 267
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	2 cut(s)	248, 389
BspANI	GGCC	2 cut(s)	265, 369
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	94, 265, 360
BspQI	GCTCTTC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	363, 417
BssMI	GATC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	124, 134, 307
Bst6I	CTCTTC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	62, 222
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	2 cut(s)	335, 371
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 422
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	265, 369
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	62, 222
BtsIMutI	CAGTG	2 cut(s)	120, 139
Cac8I	GCNNGC	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	263, 264, 367
CviAII	CATG	1 cut(s)	444
CviJI	RGCY	8 cut(s)	176, 239, 251, 265, 315, 349, 369, 416
CviKI_1	RGCY	8 cut(s)	176, 239, 251, 265, 315, 349, 369, 416
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	178, 267
Eco57I	CTGAAG	2 cut(s)	94, 300
Eco88I	CYCGRG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	178, 267
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	447
FaiI	YATR	3 cut(s)	188, 236, 445
FatI	CATG	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	249, 327
FokI	GGATG	2 cut(s)	49, 229
FriOI	GRGCYC	2 cut(s)	178, 267
Fsp4HI	GCNGC	2 cut(s)	249, 327
GluI	GCNGC	2 cut(s)	249, 327
HaeIII	GGCC	2 cut(s)	265, 369
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	447
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	30, 403
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	310, 340
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	85, 118, 175
HpyCH4III	ACNGT	3 cut(s)	124, 134, 307
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 422
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	35
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	5 cut(s)	162, 301, 313, 410, 413
MhlI	GDGCHC	2 cut(s)	178, 267
MnlI	CCTC	3 cut(s)	109, 358, 380
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	245, 422
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	447
NlaIV	GGNNCC	3 cut(s)	94, 265, 360
PciSI	GCTCTTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	250, 328
PspN4I	GGNNCC	3 cut(s)	94, 265, 360
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	3 cut(s)	263, 264, 367
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	249, 327
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	3 cut(s)	263, 264, 367
SduI	GDGCHC	2 cut(s)	178, 267
SetI	ASST	8 cut(s)	77, 101, 194, 241, 317, 351, 385, 423
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	384
SsiI	CCGC	2 cut(s)	248, 389
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	124, 134, 307
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	339
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	127, 139
TseI	GCWGC	1 cut(s)	326
TspRI	CASTG	2 cut(s)	127, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.