Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010782

Physical Location & Seq

Genomic Coordinates Reverse (-)

10796457 .. 10798305

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAAAAGTTTTCTCCGACGAAGAAATCTCCGGTAACCATCACTGGTCGGTTAATGGAATGACGTCGTTGAATCGCAGTGCTTCCGAATGGGCATTCAATCGTTTCATACAAGAATCCTCCGCCGCTGCAGACGACGGAGAATCTACGACGGCGTGTGGTGTTTCCGTCTCCTCTCCTCCTAATGTTCCTGTAGATTCAGAGGAATACAGAGCATTTCTCAAGAGTAAACTTAATCTTGCTTGTGCTGCTGTCGCCATGAAAAGGGATACTTCTGGTAGATCTGACAATGGTGGAGCCAATGAATCAGAACAAGCCTCTCTTGCTTCTTCCAAAGCTACACCAATGATGAGCAGTGCTATAACAAGTGGATCTGAGCTCTCTGGTGATGAAGAAGAAGCTGATGGTGAAACTAATATGAACCCTACTAATGTTAAACGCGTTAAAAGGATGCTCTCTAATAGAGAATCAGCTAGACGGTCCAGAAGAAGAAAGCAAGCACACTTGAGTGAGCTAGAGACACAAGTTTCACAGCTTCGTGTAGAGAATTCAAAACTCATGAAGGGTCTCACTGATGTAACTCAAACATTCAATGATGCATCTGTAGAAAACAGAGTTTTAAAAGCCAATATTGAGACACTACGAGCAAAGGTGAAAATGGCTGAAGAGACAGTGAAGAGACTCACTGGCTTTAACCCAATGTTCCACAATATGCCTCAGATTGTTTCAACTGTCTCTCTTCCTTCAGAGACATCAAATTCTCCAGACACTACAAGCAGCCAAGTGACTACACCAGAGATCATTAGCTCGGGGAACAAAGGCAAGGCCTTGATAGGGTGCAAGATGAACAGAACAGCTTCGATGCGTAGAGTTGAGAGCTTGGAACATCTGCAGAAACGTATTCGAAGCGTTGGGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010581 GO:0010604 GO:0010628 GO:0010675 GO:0010962 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032885 GO:0033500 GO:0033993 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

307

Amino Acids

33.54

Weight (kDa)

7.73

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	152 - 199	1.8e-13	bZIP transcription factor
bZIP_2	PF07716	153 - 196	5.9e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28770 AT5G28770 AT5G28770 AT5G28770
fragaria_vesca	FvH4_6g02940
malus_domestica	MD04G1224400.v1.1 MD12G1241100.v1.1
prunus_persica	Prupe.6G343100_v2.0.a1
pyrus_communis	pycom04g19770 pycom12g22080
rosa_chinensis	RchiOBHm_Chr3g0451141
rosa_laevigata	RLG00000025686
rosa_multiflora	Rmu_ssc0000028.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428610
rosa_rugosa	Rorug02G0631900
rosa_samantha	Rh3AG034700 Rh3BG035100 Rh3CG033600 Rh3DG034700
rosa_wichuraiana	Rw3G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	441
AciI	CCGC	2 cut(s)	123, 126
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	547, 757
AcuI	CTGAAG	2 cut(s)	684, 729
AcyI	GRCGYC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	264, 834
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	73, 100, 552, 592, 729
AleI	CACNNNNGTG	1 cut(s)	507
AluBI	AGCT	9 cut(s)	338, 379, 401, 473, 514, 535, 807, 857, 879
AluI	AGCT	9 cut(s)	338, 379, 401, 473, 514, 535, 807, 857, 879
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	8 cut(s)	175, 512, 572, 629, 662, 673, 739, 743
AlwI	GGATC	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	3 cut(s)	128, 248, 777
ApoI	RAATTY	2 cut(s)	547, 757
Asp700I	GAANNNNTTC	1 cut(s)	856
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	3 cut(s)	398, 419, 664
AsuII	TTCGAA	1 cut(s)	904
AvaI	CYCGRG	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	115, 235, 789
BccI	CCATC	2 cut(s)	48, 398
BceAI	ACGGC	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	262
BcoDI	GTCTC	8 cut(s)	175, 512, 572, 629, 662, 673, 739, 743
BfaI	CTAG	2 cut(s)	474, 515
BfmI	CTRYAG	4 cut(s)	129, 192, 603, 890
BfuI	GTATCC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	4 cut(s)	126, 129, 249, 778
BlsI	GCNGC	4 cut(s)	127, 130, 250, 779
Bme18I	GGWCC	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	4 cut(s)	441, 586, 608, 852
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BpmI	CTGGAG	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	904
BpuEI	CTTGAG	2 cut(s)	206, 526
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	572
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 834
Bse1I	ACTGG	2 cut(s)	50, 691
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	264, 834
BseMII	CTCAG	2 cut(s)	366, 731
BseNI	ACTGG	2 cut(s)	50, 691
BseRI	GAGGAG	2 cut(s)	163, 168
BseXI	GCAGC	3 cut(s)	115, 235, 789
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	264, 834
BsmAI	GTCTC	8 cut(s)	175, 512, 572, 629, 662, 673, 739, 743
BsmBI	CGTCTC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	827
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	808
Bsp119I	TTCGAA	1 cut(s)	904
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	281, 371, 798, 916
BspACI	CCGC	2 cut(s)	123, 126
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	2 cut(s)	367, 730
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	2 cut(s)	133, 894
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	904
BspTNI	GGTCTC	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	50, 691
BssMI	GATC	4 cut(s)	281, 371, 798, 916
BssNI	GRCGYC	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	480, 673, 733
Bst6I	CTCTTC	3 cut(s)	660, 671, 744
BstACI	GRCGYC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	904
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	375, 717
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	4 cut(s)	284, 374, 801, 919
BstMAI	GTCTC	8 cut(s)	175, 512, 572, 629, 662, 673, 739, 743
BstMBI	GATC	4 cut(s)	281, 371, 798, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 254, 323
BstPI	GGTNACC	1 cut(s)	35
BstSFI	CTRYAG	4 cut(s)	129, 192, 603, 890
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	115, 235, 789
BstX2I	RGATCY	2 cut(s)	281, 371
BstYI	RGATCY	2 cut(s)	281, 371
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	827
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	2 cut(s)	85, 361
BtsIMutI	CAGTG	6 cut(s)	43, 85, 361, 570, 678, 684
Cac8I	GCNNGC	1 cut(s)	498
CciI	TCATGA	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	480
CviAII	CATG	2 cut(s)	259, 559
DdeI	CTNAG	2 cut(s)	375, 717
DpnI	GATC	4 cut(s)	283, 373, 800, 918
DpnII	GATC	4 cut(s)	281, 371, 798, 916
DraI	TTTAAA	1 cut(s)	621
Eam1104I	CTCTTC	3 cut(s)	660, 671, 744
EarI	CTCTTC	3 cut(s)	660, 671, 744
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	684, 729
Eco88I	CYCGRG	1 cut(s)	808
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	2 cut(s)	262, 562
FaiI	YATR	6 cut(s)	110, 260, 362, 419, 560, 713
FalI	AAGNNNNNCTT	4 cut(s)	256, 288, 306, 338
FatI	CATG	2 cut(s)	258, 558
Fnu4HI	GCNGC	4 cut(s)	126, 129, 249, 778
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	126, 129, 249, 778
FspBI	CTAG	2 cut(s)	474, 515
GluI	GCNGC	4 cut(s)	126, 129, 249, 778
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	262, 562
HinfI	GANTC	7 cut(s)	73, 116, 143, 197, 305, 467, 681
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	3 cut(s)	398, 419, 664
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	8 cut(s)	19, 88, 202, 286, 310, 376, 720, 748
Hpy188III	TCNNGA	4 cut(s)	223, 483, 559, 764
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	4 cut(s)	23, 70, 140, 154
HpyAV	CCTTC	2 cut(s)	556, 753
HpyCH4III	ACNGT	3 cut(s)	480, 673, 733
HpyCH4IV	ACGT	2 cut(s)	65, 898
HpyCH4V	TGCA	4 cut(s)	131, 599, 840, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 254, 323
HpyF3I	CTNAG	2 cut(s)	375, 717
HpySE526I	ACGT	2 cut(s)	65, 898
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	262, 562
Kzo9I	GATC	4 cut(s)	281, 371, 798, 916
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	31, 46, 204, 261, 369, 496, 672, 777, 807
Lsp1109I	GCAGC	3 cut(s)	115, 235, 789
LweI	GCATC	4 cut(s)	441, 586, 608, 852
MaeI	CTAG	2 cut(s)	474, 515
MaeII	ACGT	2 cut(s)	65, 898
MaeIII	GTNAC	3 cut(s)	35, 577, 784
MalI	GATC	4 cut(s)	283, 373, 800, 918
MboI	GATC	4 cut(s)	281, 371, 798, 916
MboII	GAAGA	9 cut(s)	35, 321, 404, 407, 498, 501, 677, 688, 731
MflI	RGATCY	2 cut(s)	281, 371
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	547, 757
MluI	ACGCGT	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	130, 184, 189, 196, 328, 726
Mph1103I	ATGCAT	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	856
MseI	TTAA	6 cut(s)	54, 234, 435, 444, 620, 693
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	95
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	248, 254, 323
NdeII	GATC	4 cut(s)	281, 371, 798, 916
NlaIII	CATG	2 cut(s)	262, 562
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	784
NsiI	ATGCAT	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	904
OliI	CACNNNNGTG	1 cut(s)	507
PagI	TCATGA	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	827
PctI	GAATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	856
PfeI	GAWTC	6 cut(s)	73, 116, 143, 197, 305, 467
PkrI	GCNGC	4 cut(s)	127, 130, 250, 779
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	2 cut(s)	133, 894
PsuI	RGATCY	2 cut(s)	281, 371
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	6 cut(s)	54, 234, 435, 444, 620, 693
SatI	GCNGC	4 cut(s)	126, 129, 249, 778
Sau3AI	GATC	4 cut(s)	281, 371, 798, 916
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	441, 586, 608, 852
SfcI	CTRYAG	4 cut(s)	129, 192, 603, 890
SfuI	TTCGAA	1 cut(s)	904
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	221, 505
SmoI	CTYRAG	2 cut(s)	221, 505
Sse9I	AATT	2 cut(s)	547, 757
SseBI	AGGCCT	1 cut(s)	827
SsiI	CCGC	2 cut(s)	123, 126
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	2 cut(s)	474, 515
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	827
TaaI	ACNGT	3 cut(s)	480, 673, 733
TaiI	ACGT	2 cut(s)	68, 901
TaqI	TCGA	2 cut(s)	860, 904
TasI	AATT	2 cut(s)	547, 757
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	6 cut(s)	73, 116, 143, 197, 305, 467
Tru1I	TTAA	6 cut(s)	54, 234, 435, 444, 620, 693
Tru9I	TTAA	6 cut(s)	54, 234, 435, 444, 620, 693
TscAI	CASTG	6 cut(s)	50, 85, 361, 577, 678, 691
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	3 cut(s)	128, 248, 777
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	7 cut(s)	97, 275, 318, 405, 434, 575, 860
TspGWI	ACGGA	2 cut(s)	153, 157
TspRI	CASTG	6 cut(s)	50, 85, 361, 577, 678, 691
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	2 cut(s)	547, 757
XmnI	GAANNNNTTC	1 cut(s)	856
XspI	CTAG	2 cut(s)	474, 515
ZraI	GACGTC	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.