RchiOBHm_Chr3g0451141
BZIP Family

Light-inducible protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
2357269 .. 2360646
3378 bp
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UTR
Exon/CDS
Intron
PRQ41844

Sequence Viewer

Length: 1284 bp
ATGGATAGGGTGTTCTCTTCCATGGGTGAAATGTCAGACCATCTCTGGTCTTCTTCTTCTTCTTGTGCACCAGTACCACCTGGAACTAATGTAAATGAAGATGAAGATGAGCTTTCCAAAATGAACAGGAGCGCTTCAGAGTGGGCATTCCAGCGTTTTCTCCAACAAGAAGCCTCTGTTTCACCTTCATCTTCCTCACAAGCTCAAAATGATGTTGAAGAAACCAAGGTCAATGCAACAAGTATGGCCTTACCAAATGGGCAAAACCCCACAAACACTAACAGCAGTGCGGCGTCGTTTAAGGCTCCCAATGTTCCTGTTGATTCTGAGGAGTACCAGGCCTTCCTCAAGACCAAGCTCGATCTGGCTTGTGCTGCTGTGGCCTTGTCTCGTGTAAAGGGATCTTTAGTAAAAGCTCAAGATTCTGCTTCTTTAGCTGACAGTGGGCAACAGGCTTCCGATGCTTTGCAACTGGGATCTCAAGCCCCCTTTGAAGGAGCTGGGAATGATTTATGCAGGTCATATGATAAGAATGCTACTGCACCACTTGGAATTCCTTCATTGCCAACGATACAAAGTAGATCTGGGGCTTCAATAAGGCAAGCAACAAGTGCATCATCAAGAGAACTCTCAGATTATGAGGAAGTTGAAGGAGAGACTGCAATGACTGAAAATATGGACCCTACTGATGCGAAACGTGTGAGGAGAATGCTCTCTAATAGAGAATCAGCTAGACGCTCAAGAAGAAGAAAGCAGGCCCATTTGACTGAGCTTGAGACACAGGCATCTCAATTAAGGGTTGAGAACTCCTCTTTATTGAAGCGTCTGACTGATATAAACCAGAAGTACAATGAAGCATCTGTTGACAACAGAGTTTTGAGAGCTGATATTGAAACATTGAGAGCAAAGGTAAAGATGGCTGAGGAGACAGTGAAAAGACTAACCGGATCAAACTCTGTGTTTCATACTATGTCAGATGTGTCCTCAATCAGCATGGCACCATTTGATGGAAGCCCATCAGAAACATCAGCAGATGCTGCTGTTCCCGTGCAAGATGACCCAAACCATCACTATTTCCAACCTGCTTCCAATAACTCCATGCCAACTGACTTCAGAGGCAACAATGGTTTGGCAGATAATACCCCTTCAGTTGAAAATGCGCAGCAGACTTCTGCAGCAACATCAAAAGAAGTGGTGGGAAACAAGATGGGACGAACACTTTCCTTACCGCGAGTTGCTAGCTTAGAGCATCTCCAGAAGCGGATCCGCGGTGGAGAGCAATAG

Protein Analysis

427

Amino Acids

46.21

Weight (kDa)

5.39

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 229 - 278 1.5e-07 Basic region leucine zipper
bZIP_1 PF00170 231 - 284 1.3e-12 bZIP transcription factor
bZIP_C PF12498 299 - 425 2.2e-42 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010782)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1161
Acc36I ACCTGC 2 cut(s) 507, 1090
AccB1I GGYRCC 1 cut(s) 997
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccII CGCG 2 cut(s) 1231, 1269
AciI CCGC 5 cut(s) 290, 1229, 1261, 1267, 1269
AclWI GGATC 5 cut(s) 409, 484, 955, 1258, 1271
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 3 cut(s) 120, 1096, 1131
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 3 cut(s) 75, 335, 848
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 494, 1007
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 7 cut(s) 218, 494, 594, 650, 820, 893, 1154
AjnI CCWGG 2 cut(s) 79, 336
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 4 cut(s) 393, 650, 770, 920
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 5 cut(s) 409, 484, 955, 1258, 1271
AlwNI CAGNNNCTG 1 cut(s) 1037
Aor51HI AGCGCT 1 cut(s) 133
AoxI GGCC 4 cut(s) 246, 339, 381, 756
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 374, 1037, 1162, 1175
ApoI RAATTY 1 cut(s) 552
Asp700I GAANNNNTTC 2 cut(s) 556, 1219
AspLEI GCGC 2 cut(s) 134, 1162
AspS9I GGNCC 2 cut(s) 679, 757
AsuHPI GGTGA 2 cut(s) 38, 174
AsuNHI GCTAGC 1 cut(s) 1238
AvaII GGWCC 1 cut(s) 679
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 1263
BanI GGYRCC 1 cut(s) 997
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 921
BbvI GCAGC 4 cut(s) 361, 1024, 1174, 1187
BccI CCATC 6 cut(s) 48, 910, 1001, 1024, 1074, 1201
BciT130I CCWGG 2 cut(s) 81, 338
BcoDI GTCTC 4 cut(s) 393, 650, 770, 920
BfaI CTAG 2 cut(s) 732, 1239
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 507, 1090
BglII AGATCT 1 cut(s) 581
BisI GCNGC 5 cut(s) 291, 375, 1038, 1163, 1176
BlsI GCNGC 5 cut(s) 292, 376, 1039, 1164, 1177
Bme1390I CCNGG 2 cut(s) 81, 338
Bme18I GGWCC 1 cut(s) 679
BmgT120I GGNCC 2 cut(s) 679, 757
BmiI GGNNCC 4 cut(s) 306, 681, 999, 1265
BmrFI CCNGG 2 cut(s) 81, 338
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 7 cut(s) 451, 623, 679, 794, 866, 1024, 1258
BmtI GCTAGC 1 cut(s) 1242
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 1 cut(s) 1238
Bpu10I CCTNAGC 1 cut(s) 921
BpuEI CTTGAG 5 cut(s) 332, 402, 465, 724, 794
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 21, 225, 1267
BsaWI WCCGGW 1 cut(s) 944
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 1007
Bse1I ACTGG 2 cut(s) 71, 477
Bse3DI GCAATG 2 cut(s) 560, 669
BseBI CCWGG 2 cut(s) 81, 338
BseDI CCNNGG 3 cut(s) 21, 225, 1267
BseLI CCNNNNNNNGG 2 cut(s) 494, 1007
BseMI GCAATG 2 cut(s) 560, 669
BseMII CTCAG 4 cut(s) 318, 645, 759, 912
BseNI ACTGG 2 cut(s) 71, 477
BseRI GAGGAG 4 cut(s) 344, 718, 799, 938
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 4 cut(s) 361, 1024, 1174, 1187
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 1231, 1269
BshFI GGCC 4 cut(s) 248, 341, 383, 758
BshNI GGYRCC 1 cut(s) 997
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 945
BslFI GGGAC 1 cut(s) 1224
BslI CCNNNNNNNGG 2 cut(s) 494, 1007
BsmAI GTCTC 4 cut(s) 393, 650, 770, 920
BsmFI GGGAC 1 cut(s) 1224
BsmI GAATGC 3 cut(s) 146, 538, 714
BsnI GGCC 4 cut(s) 248, 341, 383, 758
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 290, 1229, 1261, 1267, 1269
BspANI GGCC 4 cut(s) 248, 341, 383, 758
BspCNI CTCAG 4 cut(s) 319, 644, 760, 913
BspFNI CGCG 2 cut(s) 1231, 1269
BspLI GGNNCC 4 cut(s) 306, 681, 999, 1265
BspMAI CTGCAG 1 cut(s) 1177
BspMI ACCTGC 2 cut(s) 507, 1090
BspOI GCTAGC 1 cut(s) 1242
BspPI GGATC 5 cut(s) 409, 484, 955, 1258, 1271
BspT107I GGYRCC 1 cut(s) 997
BsrDI GCAATG 2 cut(s) 560, 669
BsrI ACTGG 2 cut(s) 71, 477
BssECI CCNNGG 3 cut(s) 21, 225, 1267
BssMI GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
BssNI GRCGYC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 21, 225
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 81, 338
Bst4CI ACNGT 2 cut(s) 443, 931
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 293
BstAPI GCANNNNNTGC 2 cut(s) 611, 1037
BstC8I GCNNGC 3 cut(s) 603, 756, 1240
BstDEI CTNAG 5 cut(s) 327, 631, 768, 921, 1243
BstDSI CCRYGG 2 cut(s) 21, 1267
BstFNI CGCG 2 cut(s) 1231, 1269
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 1162
BstKTI GATC 6 cut(s) 364, 404, 479, 584, 950, 1266
BstMAI GTCTC 4 cut(s) 393, 650, 770, 920
BstMBI GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
BstMWI GCNNNNNNNGC 6 cut(s) 374, 380, 434, 461, 611, 1037
BstNI CCWGG 2 cut(s) 81, 338
BstSCI CCNGG 2 cut(s) 79, 336
BstSFI CTRYAG 1 cut(s) 1173
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 1231, 1269
BstV1I GCAGC 4 cut(s) 361, 1024, 1174, 1187
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 4 cut(s) 401, 476, 581, 1263
BstYI RGATCY 4 cut(s) 401, 476, 581, 1263
BsuRI GGCC 4 cut(s) 248, 341, 383, 758
BtgI CCRYGG 2 cut(s) 21, 1267
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 292, 448, 936
BveI ACCTGC 2 cut(s) 507, 1090
Cac8I GCNNGC 3 cut(s) 603, 756, 1240
CaiI CAGNNNCTG 1 cut(s) 1037
CfoI GCGC 2 cut(s) 134, 1162
Cfr13I GGNCC 2 cut(s) 679, 757
Cfr42I CCGCGG 1 cut(s) 1270
CseI GACGC 3 cut(s) 282, 744, 812
Csp6I GTAC 3 cut(s) 74, 334, 847
CspCI CAANNNNNGTGG 2 cut(s) 1173, 1208
CviAII CATG 3 cut(s) 22, 994, 1099
CviQI GTAC 3 cut(s) 74, 334, 847
DdeI CTNAG 5 cut(s) 327, 631, 768, 921, 1243
DpnI GATC 6 cut(s) 363, 403, 478, 583, 949, 1265
DpnII GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 21, 225
Eco147I AGGCCT 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 679
Eco47III AGCGCT 1 cut(s) 133
Eco57I CTGAAG 3 cut(s) 120, 1096, 1131
EcoRI GAATTC 1 cut(s) 552
EcoRII CCWGG 2 cut(s) 79, 336
EcoT14I CCWWGG 2 cut(s) 21, 225
ErhI CCWWGG 2 cut(s) 21, 225
FaeI CATG 3 cut(s) 25, 997, 1102
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 1224
FatI CATG 3 cut(s) 21, 993, 1098
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 291, 375, 1038, 1163, 1176
Fsp4HI GCNGC 5 cut(s) 291, 375, 1038, 1163, 1176
FspBI CTAG 2 cut(s) 732, 1239
FspI TGCGCA 1 cut(s) 1161
GlaI GCGC 2 cut(s) 133, 1161
GluI GCNGC 5 cut(s) 291, 375, 1038, 1163, 1176
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 1238
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 4 cut(s) 248, 341, 383, 758
HapII CCGG 1 cut(s) 945
HgaI GACGC 3 cut(s) 282, 744, 812
HhaI GCGC 2 cut(s) 134, 1162
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 3 cut(s) 25, 997, 1102
Hin6I GCGC 2 cut(s) 132, 1160
HinP1I GCGC 2 cut(s) 132, 1160
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 3 cut(s) 323, 422, 725
HpaII CCGG 1 cut(s) 945
HphI GGTGA 2 cut(s) 38, 174
Hpy166II GTNNAC 2 cut(s) 68, 865
Hpy188I TCNGA 9 cut(s) 37, 139, 328, 460, 634, 828, 976, 1021, 1115
Hpy188III TCNNGA 5 cut(s) 349, 419, 621, 741, 1255
Hpy8I GTNNAC 2 cut(s) 68, 865
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 6 cut(s) 195, 352, 488, 567, 644, 1155
HpyCH4III ACNGT 2 cut(s) 443, 931
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 9 cut(s) 68, 236, 469, 516, 542, 614, 662, 1051, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 374, 380, 434, 461, 611, 1037
HpyF3I CTNAG 5 cut(s) 327, 631, 768, 921, 1243
HpySE526I ACGT 1 cut(s) 697
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 3 cut(s) 25, 997, 1102
HspAI GCGC 2 cut(s) 132, 1160
KspI CCGCGG 1 cut(s) 1270
Kzo9I GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
LmnI GCTCC 3 cut(s) 129, 310, 497
Lsp1109I GCAGC 4 cut(s) 361, 1024, 1174, 1187
LweI GCATC 7 cut(s) 451, 623, 679, 794, 866, 1024, 1258
MaeI CTAG 2 cut(s) 732, 1239
MaeII ACGT 1 cut(s) 697
MalI GATC 6 cut(s) 363, 403, 478, 583, 949, 1265
MboI GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
MflI RGATCY 4 cut(s) 401, 476, 581, 1263
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 552, 791
MmeI TCCRAC 2 cut(s) 187, 1102
MroXI GAANNNNTTC 2 cut(s) 556, 1219
MseI TTAA 2 cut(s) 300, 794
MspA1I CMGCKG 1 cut(s) 1269
MspI CCGG 1 cut(s) 945
MspR9I CCNGG 2 cut(s) 81, 338
Mva1269I GAATGC 3 cut(s) 146, 538, 714
MvaI CCWGG 2 cut(s) 81, 338
MvnI CGCG 2 cut(s) 1231, 1269
MwoI GCNNNNNNNGC 6 cut(s) 374, 380, 434, 461, 611, 1037
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 523
NdeII GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
NheI GCTAGC 1 cut(s) 1238
NlaIII CATG 3 cut(s) 25, 997, 1102
NlaIV GGNNCC 4 cut(s) 306, 681, 999, 1265
NsbI TGCGCA 1 cut(s) 1161
PceI AGGCCT 1 cut(s) 341
PctI GAATGC 3 cut(s) 146, 538, 714
PdmI GAANNNNTTC 2 cut(s) 556, 1219
PfeI GAWTC 3 cut(s) 323, 422, 725
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 5 cut(s) 292, 376, 1039, 1164, 1177
Psp6I CCWGG 2 cut(s) 79, 336
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 79, 336
PspN4I GGNNCC 4 cut(s) 306, 681, 999, 1265
PspPI GGNCC 2 cut(s) 679, 757
PstI CTGCAG 1 cut(s) 1177
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 4 cut(s) 401, 476, 581, 1263
RsaI GTAC 3 cut(s) 75, 335, 848
RsaNI GTAC 3 cut(s) 74, 334, 847
SacII CCGCGG 1 cut(s) 1270
SaqAI TTAA 2 cut(s) 300, 794
SatI GCNGC 5 cut(s) 291, 375, 1038, 1163, 1176
Sau3AI GATC 6 cut(s) 361, 401, 476, 581, 947, 1263
Sau96I GGNCC 2 cut(s) 679, 757
ScrFI CCNGG 2 cut(s) 81, 338
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 7 cut(s) 451, 623, 679, 794, 866, 1024, 1258
SfcI CTRYAG 1 cut(s) 1173
Sfr303I CCGCGG 1 cut(s) 1270
SgrBI CCGCGG 1 cut(s) 1270
SinI GGWCC 1 cut(s) 679
SmlI CTYRAG 5 cut(s) 347, 417, 480, 739, 773
SmoI CTYRAG 5 cut(s) 347, 417, 480, 739, 773
Sse9I AATT 2 cut(s) 552, 791
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 5 cut(s) 290, 1229, 1261, 1267, 1269
SspMI CTAG 2 cut(s) 732, 1239
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 79, 336
StyI CCWWGG 2 cut(s) 21, 225
TaaI ACNGT 2 cut(s) 443, 931
TaiI ACGT 1 cut(s) 700
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 552, 791
TatI WGTACW 1 cut(s) 846
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 3 cut(s) 323, 422, 725
Tru1I TTAA 2 cut(s) 300, 794
Tru9I TTAA 2 cut(s) 300, 794
TscAI CASTG 3 cut(s) 292, 448, 936
TseI GCWGC 4 cut(s) 374, 1037, 1162, 1175
TspDTI ATGAA 7 cut(s) 111, 117, 137, 177, 549, 867, 953
TspRI CASTG 3 cut(s) 292, 448, 936
Van91I CCANNNNNTGG 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 679
XapI RAATTY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmnI GAANNNNTTC 2 cut(s) 556, 1219
XspI CTAG 2 cut(s) 732, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.