Rroxscaffold_6G00428610
BZIP Family

Light-inducible protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
49007823 .. 49011474
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428610.1

Sequence Viewer

Length: 1299 bp
ATGATGGATAGGGCGTTCTCTTCCATGGGTGAAATGCCAGACCATCTCTGGTCTTCTTCTTCTTCTTCTGCACCAATACCACCTGGAACTAATGTAAATGAAGATGAAGATGAGCTTTCCAAACTGAACAGGAGCGCTTCTGAGTGGGCCTTCCAGCGTTTTCTCCAACAAGAAGCCTCTGTTTCACCTTCATCTCCCTCACAAGCTCAAAATGATGTTGAAGAAACCAAGGTCAATGCAACAAGTATGGCCTTACCAAATGGGACAAACCCCACAAACACTAACAGCAGTGCGGCGCCGTTTAAGGCTCCTAATGTTCCTGTTGATTCTGAGGAGTACCAGGCCTTCCTCAAGACCAAGCTTGATCTGGCTTGTGCTGCTGTGGCCTTGTCTCGTGTAAAGGGATCTTTAGTGAAAGCTCAAGATTCTGCTTCTTTAGCTGACAGTAAGCAACAGGCTTCCGATGCTTTGCAACTGGGATCTCAAGCCCCCTTTGAAGATAGGGTTGCTCCATTGATTATTTATAGAGCTGAGTCATATGATAAGAATGCTACTGCACCACTTGGAATTCCTTCATTGCCAACGATACAAAGTAGATCTGGGGCTTCAATAAGGCAAGCAACAAGTGGATCATCAAGAGAACTCTCAGATTATGAGGAAGTTGAAGGAGAAACTGCAATGACCGAAAATATGGACCCTACTGATGCAAAACGTGTGAGGAGAATGCTCTCTAATAGAGAATCAGCTAGACGCTCAAGAAGAAGAAAGCAGGCCCATTTGACTGAGCTTGAGACACAGGCATCTCAATTAAGAGTTGAGAACTCCTCTTTATTGAAGCGTCTGACTGATATAAACCAGAAGTACAATGAAGCATCTGTTGACAACAGAGTTTTGAGAGCTGATATTGAAACATTGAGAGCAAAGGTAAAGATGGCTGAGGAGACAGTGAAAAGACTAACCGGATCAAACTCTGTGTATCATACTATGTCAGATGTGTCCTCAATCAGCATGGCACCATTTGATGGAAGCCCATCAGAAACATCAGCAGATGCTGCTGTCCCCGTGCAAGATGACCCAAACCATCACTATTTCCAGCCTGCTTCCAATAACTCCATGCCAACTGACTTCAGAGGCAACAATGGTTTGGCAGATAATACCCCTTCAGTTGAAAATGCGCAGCAGACTTCTGCAGCAACATCAAAAGAAGTGGTGGGAAACAAGATGGGACGAACACTTTCCTTACAGCGAGTTGCTAGCTTAGAGCGTCTCCAGAAGCGGATCCGCGGTGGAGAGCAATAG

Protein Analysis

432

Amino Acids

47.03

Weight (kDa)

5.51

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 234 - 283 1.6e-07 Basic region leucine zipper
bZIP_1 PF00170 236 - 289 1.3e-12 bZIP transcription factor
bZIP_C PF12498 304 - 430 7.8e-42 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010782)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1176
AccB1I GGYRCC 2 cut(s) 295, 1012
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccII CGCG 1 cut(s) 1284
AciI CCGC 4 cut(s) 293, 1276, 1282, 1284
AclWI GGATC 6 cut(s) 412, 487, 637, 970, 1273, 1286
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 2 cut(s) 1111, 1146
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 2 cut(s) 338, 863
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 1022
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 7 cut(s) 221, 497, 609, 665, 835, 908, 1169
AjnI CCWGG 2 cut(s) 82, 339
AloI GAACNNNNNNTCC 1 cut(s) 31
Alw26I GTCTC 4 cut(s) 396, 785, 935, 1271
AlwI GGATC 6 cut(s) 412, 487, 637, 970, 1273, 1286
AlwNI CAGNNNCTG 1 cut(s) 1052
Aor51HI AGCGCT 1 cut(s) 136
AoxI GGCC 5 cut(s) 147, 249, 342, 384, 771
ApeKI GCWGC 4 cut(s) 377, 1052, 1177, 1190
ApoI RAATTY 1 cut(s) 567
Asp700I GAANNNNTTC 2 cut(s) 571, 1234
AspLEI GCGC 3 cut(s) 137, 298, 1177
AspS9I GGNCC 3 cut(s) 147, 694, 772
AsuHPI GGTGA 2 cut(s) 41, 177
AsuNHI GCTAGC 1 cut(s) 1253
AvaII GGWCC 1 cut(s) 694
BamHI GGATCC 1 cut(s) 1278
BanI GGYRCC 2 cut(s) 295, 1012
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 4 cut(s) 364, 1039, 1189, 1202
BccI CCATC 6 cut(s) 51, 925, 1016, 1039, 1089, 1216
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 84, 341
BcoDI GTCTC 4 cut(s) 396, 785, 935, 1271
BfaI CTAG 2 cut(s) 747, 1254
BfmI CTRYAG 1 cut(s) 1188
BfoI RGCGCY 2 cut(s) 138, 299
BglII AGATCT 1 cut(s) 596
BisI GCNGC 5 cut(s) 294, 378, 1053, 1178, 1191
BlsI GCNGC 5 cut(s) 295, 379, 1054, 1179, 1192
Bme1390I CCNGG 2 cut(s) 84, 341
Bme18I GGWCC 1 cut(s) 694
BmgT120I GGNCC 3 cut(s) 147, 694, 772
BmiI GGNNCC 5 cut(s) 297, 309, 696, 1014, 1280
BmrFI CCNGG 2 cut(s) 84, 341
BmrI ACTGGG 1 cut(s) 485
BmsI GCATC 5 cut(s) 454, 694, 809, 881, 1039
BmtI GCTAGC 1 cut(s) 1257
BmuI ACTGGG 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 1 cut(s) 1253
Bpu10I CCTNAGC 1 cut(s) 936
BpuEI CTTGAG 5 cut(s) 335, 405, 468, 739, 809
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 24, 228, 1282
BsaWI WCCGGW 1 cut(s) 959
Bsc4I CCNNNNNNNGG 1 cut(s) 1022
Bse1I ACTGG 1 cut(s) 480
Bse3DI GCAATG 2 cut(s) 575, 684
BseBI CCWGG 2 cut(s) 84, 341
BseDI CCNNGG 3 cut(s) 24, 228, 1282
BseLI CCNNNNNNNGG 1 cut(s) 1022
BseMI GCAATG 2 cut(s) 575, 684
BseMII CTCAG 6 cut(s) 132, 321, 522, 660, 774, 927
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 4 cut(s) 347, 733, 814, 953
BseXI GCAGC 4 cut(s) 364, 1039, 1189, 1202
BsgI GTGCAG 2 cut(s) 54, 540
Bsh1236I CGCG 1 cut(s) 1284
BshFI GGCC 5 cut(s) 149, 251, 344, 386, 773
BshNI GGYRCC 2 cut(s) 295, 1012
BsiSI CCGG 1 cut(s) 960
BslFI GGGAC 3 cut(s) 277, 1043, 1239
BslI CCNNNNNNNGG 1 cut(s) 1022
BsmAI GTCTC 4 cut(s) 396, 785, 935, 1271
BsmBI CGTCTC 1 cut(s) 1271
BsmFI GGGAC 3 cut(s) 277, 1043, 1239
BsmI GAATGC 2 cut(s) 553, 729
BsnI GGCC 5 cut(s) 149, 251, 344, 386, 773
Bsp143I GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 4 cut(s) 293, 1276, 1282, 1284
BspANI GGCC 5 cut(s) 149, 251, 344, 386, 773
BspCNI CTCAG 6 cut(s) 133, 322, 523, 659, 775, 928
BspFNI CGCG 1 cut(s) 1284
BspLI GGNNCC 5 cut(s) 297, 309, 696, 1014, 1280
BspMAI CTGCAG 1 cut(s) 1192
BspOI GCTAGC 1 cut(s) 1257
BspPI GGATC 6 cut(s) 412, 487, 637, 970, 1273, 1286
BspT107I GGYRCC 2 cut(s) 295, 1012
BsrDI GCAATG 2 cut(s) 575, 684
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 24, 228, 1282
BssMI GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
BssNI GRCGYC 1 cut(s) 296
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 24, 228
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 2 cut(s) 84, 341
Bst4CI ACNGT 2 cut(s) 446, 946
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstC8I GCNNGC 4 cut(s) 618, 771, 1098, 1255
BstDEI CTNAG 7 cut(s) 141, 330, 531, 646, 783, 936, 1258
BstDSI CCRYGG 2 cut(s) 24, 1282
BstFNI CGCG 1 cut(s) 1284
BstH2I RGCGCY 2 cut(s) 138, 299
BstHHI GCGC 3 cut(s) 137, 298, 1177
BstKTI GATC 7 cut(s) 367, 407, 482, 599, 632, 965, 1281
BstMAI GTCTC 4 cut(s) 396, 785, 935, 1271
BstMBI GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
BstMWI GCNNNNNNNGC 5 cut(s) 377, 383, 437, 464, 1052
BstNI CCWGG 2 cut(s) 84, 341
BstSCI CCNGG 2 cut(s) 82, 339
BstSFI CTRYAG 1 cut(s) 1188
BstUI CGCG 1 cut(s) 1284
BstV1I GCAGC 4 cut(s) 364, 1039, 1189, 1202
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 4 cut(s) 404, 479, 596, 1278
BstYI RGATCY 4 cut(s) 404, 479, 596, 1278
BsuRI GGCC 5 cut(s) 149, 251, 344, 386, 773
BtgI CCRYGG 2 cut(s) 24, 1282
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 295, 951
Cac8I GCNNGC 4 cut(s) 618, 771, 1098, 1255
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 3 cut(s) 137, 298, 1177
Cfr13I GGNCC 3 cut(s) 147, 694, 772
Cfr42I CCGCGG 1 cut(s) 1285
CseI GACGC 3 cut(s) 759, 827, 1253
Csp6I GTAC 2 cut(s) 337, 862
CspCI CAANNNNNGTGG 2 cut(s) 1188, 1223
CviAII CATG 3 cut(s) 25, 1009, 1114
CviQI GTAC 2 cut(s) 337, 862
DdeI CTNAG 7 cut(s) 141, 330, 531, 646, 783, 936, 1258
DinI GGCGCC 1 cut(s) 297
DpnI GATC 7 cut(s) 366, 406, 481, 598, 631, 964, 1280
DpnII GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 24, 228
Eco147I AGGCCT 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 694
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 1111, 1146
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 82, 339
EcoT14I CCWWGG 2 cut(s) 24, 228
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 24, 228
Esp3I CGTCTC 1 cut(s) 1271
FaeI CATG 3 cut(s) 28, 1012, 1117
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 3 cut(s) 277, 1043, 1239
FatI CATG 3 cut(s) 24, 1008, 1113
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 5 cut(s) 294, 378, 1053, 1178, 1191
Fsp4HI GCNGC 5 cut(s) 294, 378, 1053, 1178, 1191
FspBI CTAG 2 cut(s) 747, 1254
FspI TGCGCA 1 cut(s) 1176
GlaI GCGC 3 cut(s) 136, 297, 1176
GluI GCNGC 5 cut(s) 294, 378, 1053, 1178, 1191
GsuI CTGGAG 1 cut(s) 1253
HaeII RGCGCY 2 cut(s) 138, 299
HaeIII GGCC 5 cut(s) 149, 251, 344, 386, 773
HapII CCGG 1 cut(s) 960
HgaI GACGC 3 cut(s) 759, 827, 1253
HhaI GCGC 3 cut(s) 137, 298, 1177
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 3 cut(s) 28, 1012, 1117
Hin6I GCGC 3 cut(s) 135, 296, 1175
HinP1I GCGC 3 cut(s) 135, 296, 1175
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 4 cut(s) 326, 425, 533, 740
HpaII CCGG 1 cut(s) 960
HphI GGTGA 2 cut(s) 41, 177
Hpy166II GTNNAC 1 cut(s) 880
Hpy188I TCNGA 8 cut(s) 142, 331, 463, 649, 843, 991, 1036, 1130
Hpy188III TCNNGA 5 cut(s) 352, 422, 636, 756, 1270
Hpy8I GTNNAC 1 cut(s) 880
HpyAV CCTTC 6 cut(s) 160, 198, 355, 582, 659, 1170
HpyCH4III ACNGT 2 cut(s) 446, 946
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 8 cut(s) 71, 239, 472, 557, 677, 707, 1066, 1190
HpyF10VI GCNNNNNNNGC 5 cut(s) 377, 383, 437, 464, 1052
HpyF3I CTNAG 7 cut(s) 141, 330, 531, 646, 783, 936, 1258
HpySE526I ACGT 1 cut(s) 712
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 3 cut(s) 28, 1012, 1117
HspAI GCGC 3 cut(s) 135, 296, 1175
KasI GGCGCC 1 cut(s) 295
KspI CCGCGG 1 cut(s) 1285
Kzo9I GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
LmnI GCTCC 3 cut(s) 132, 313, 514
Lsp1109I GCAGC 4 cut(s) 364, 1039, 1189, 1202
LweI GCATC 5 cut(s) 454, 694, 809, 881, 1039
MaeI CTAG 2 cut(s) 747, 1254
MaeII ACGT 1 cut(s) 712
MalI GATC 7 cut(s) 366, 406, 481, 598, 631, 964, 1280
MboI GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
MflI RGATCY 4 cut(s) 404, 479, 596, 1278
MluCI AATT 2 cut(s) 567, 806
Mly113I GGCGCC 1 cut(s) 296
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 190
MroXI GAANNNNTTC 2 cut(s) 571, 1234
MseI TTAA 2 cut(s) 303, 809
MspA1I CMGCKG 1 cut(s) 1284
MspI CCGG 1 cut(s) 960
MspR9I CCNGG 2 cut(s) 84, 341
Mva1269I GAATGC 2 cut(s) 553, 729
MvaI CCWGG 2 cut(s) 84, 341
MvnI CGCG 1 cut(s) 1284
MwoI GCNNNNNNNGC 5 cut(s) 377, 383, 437, 464, 1052
NarI GGCGCC 1 cut(s) 296
NcoI CCATGG 1 cut(s) 24
NdeI CATATG 1 cut(s) 538
NdeII GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 3 cut(s) 28, 1012, 1117
NlaIV GGNNCC 5 cut(s) 297, 309, 696, 1014, 1280
NsbI TGCGCA 1 cut(s) 1176
PceI AGGCCT 1 cut(s) 344
PctI GAATGC 2 cut(s) 553, 729
PdmI GAANNNNTTC 2 cut(s) 571, 1234
PfeI GAWTC 3 cut(s) 326, 425, 740
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 5 cut(s) 295, 379, 1054, 1179, 1192
PleI GAGTC 1 cut(s) 541
PluTI GGCGCC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 82, 339
PspGI CCWGG 2 cut(s) 82, 339
PspN4I GGNNCC 5 cut(s) 297, 309, 696, 1014, 1280
PspPI GGNCC 3 cut(s) 147, 694, 772
PstI CTGCAG 1 cut(s) 1192
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 4 cut(s) 404, 479, 596, 1278
RsaI GTAC 2 cut(s) 338, 863
RsaNI GTAC 2 cut(s) 337, 862
SacII CCGCGG 1 cut(s) 1285
SaqAI TTAA 2 cut(s) 303, 809
SatI GCNGC 5 cut(s) 294, 378, 1053, 1178, 1191
Sau3AI GATC 7 cut(s) 364, 404, 479, 596, 629, 962, 1278
Sau96I GGNCC 3 cut(s) 147, 694, 772
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 2 cut(s) 84, 341
SfaNI GCATC 5 cut(s) 454, 694, 809, 881, 1039
SfcI CTRYAG 1 cut(s) 1188
SfoI GGCGCC 1 cut(s) 297
Sfr303I CCGCGG 1 cut(s) 1285
SgrBI CCGCGG 1 cut(s) 1285
SinI GGWCC 1 cut(s) 694
SmlI CTYRAG 5 cut(s) 350, 420, 483, 754, 788
SmoI CTYRAG 5 cut(s) 350, 420, 483, 754, 788
Sse9I AATT 2 cut(s) 567, 806
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 4 cut(s) 293, 1276, 1282, 1284
SspDI GGCGCC 1 cut(s) 295
SspMI CTAG 2 cut(s) 747, 1254
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 82, 339
StyI CCWWGG 2 cut(s) 24, 228
TaaI ACNGT 2 cut(s) 446, 946
TaiI ACGT 1 cut(s) 715
TaqII GACCGA 1 cut(s) 698
TasI AATT 2 cut(s) 567, 806
TatI WGTACW 1 cut(s) 861
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 3 cut(s) 326, 425, 740
Tru1I TTAA 2 cut(s) 303, 809
Tru9I TTAA 2 cut(s) 303, 809
TscAI CASTG 2 cut(s) 295, 951
TseI GCWGC 4 cut(s) 377, 1052, 1177, 1190
TspDTI ATGAA 5 cut(s) 114, 120, 180, 564, 882
TspRI CASTG 2 cut(s) 295, 951
Van91I CCANNNNNTGG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 694
XapI RAATTY 1 cut(s) 567
XcmI CCANNNNNNNNNTGG 2 cut(s) 45, 364
XmnI GAANNNNTTC 2 cut(s) 571, 1234
XspI CTAG 2 cut(s) 747, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.