Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010782

Physical Location & Seq

Genomic Coordinates Reverse (-)

1650185 .. 1653355

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGATAGGGTGTTCTCTTCCATGGAAGAAATCTCTGACCATCTCTGGTCTTCTTCTGGAAAAAATGAAGATGAAGATGAAGATGAGCTTTCCAAAATGAACAGAAGCACTTCAGAGTGGTCCTTCCAGCGTTTTCTCCAACAACAACAAGGCTCTGTTTCACCTTCATCTTCCTCACAACAACAACAACAAGAAGCTCAGAATAATGAAGTTGAAGAGATCAAGGTCAATGCAACAAGTATGGCCTTCCCAAATGGGCCAAATCATAGTAACACTAGCAGCAGTGCAGCTTCGTTTAAGCCTCCTAATGTTCCTGTGGATTCTGAGGAGTATCAGGCTTTCCTTAAAACCAAGCTCGATCTGGCTTGTGCTGCTGTGGCTTTGTCTCGCGTGAAGGGATCTTTAGTGAAAGCTCAAGATTCTTCTTTAGCTGATAGTGGGCAACAGGCTTCCGATGATTTGCAACTGGGATCTCAAGCCTCTTCTCAAGGAGCTGGGAATGATTTATGCAGGTCATATGATAAGAATACTAATGCACCATTTGGAATTCCTGCATTGCCTACAATACGAAATAGATCTGCGGTTCCAATAAGGCAAGCAACAAGTGGATCATCCAGAGAACTCTCAGATGATGAGGAAGTTGAAGGAGAAACTGCAATGACAGAAAATATGGACCCTACTGATGTGAAACGTGTGAGGAGAATGCTCTCTAATAGAGAATCAGCTAGACGCTCAAGAAGAAGAAAACAGGCCCATCTGACTGAGCTCGAGACACAGGCGGCTCAATTAAGAGTTGAGAACTCCTCTCTATTGAAGCGTCTAACTGATATGAACCAGAAGTACAATGAAGCAGCCGTTGACAACAGAGTTTTGAAAGCTGATATGGAAACATTGAGAGCAAAGGTAAAGATGGCGGAGGAGACAGTGAAAAGACTAACCGGATCAAACCCCTTGTTTCATACTACGTCAGATGTGTCCTCAATCAGTATGGCACCTTTTGACGGAAGCCCTTCAGAAACATCAACAGATGCCGCTGTTCCTGTGCAAGATGACCCAAACCATCACTATTTCCAACCTTCATCTAATAACTCTATGCCAACTCATGATTTTAGAGGCAACAATGGTTTGGCAGACAATACCCCTTCAGTTGAAAATGCACAGCAGACTTCTGCAGCAACATCAACAGAAGTGGCGGGGAACAAGATGGGACAAACACCTTCCTTACAGAGAGTTGATAGCTTAGAGCGTCTCCAGAAGCGGATCCGCGGTGGAGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010581 GO:0010604 GO:0010628 GO:0010675 GO:0010962 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032885 GO:0033500 GO:0033993 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

427

Amino Acids

46.74

Weight (kDa)

5.18

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	228 - 279	6.1e-07	Basic region leucine zipper
bZIP_1	PF00170	229 - 282	1e-12	bZIP transcription factor
bZIP_C	PF12498	297 - 424	3.2e-42	Basic leucine-zipper C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28770 AT5G28770 AT5G28770 AT5G28770
fragaria_vesca	FvH4_6g02940
malus_domestica	MD04G1224400.v1.1 MD12G1241100.v1.1
prunus_persica	Prupe.6G343100_v2.0.a1
pyrus_communis	pycom04g19770 pycom12g22080
rosa_chinensis	RchiOBHm_Chr3g0451141
rosa_laevigata	RLG00000025686
rosa_multiflora	Rmu_ssc0000028.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428610
rosa_rugosa	Rorug02G0631900
rosa_samantha	Rh3AG034700 Rh3BG035100 Rh3CG033600 Rh3DG034700
rosa_wichuraiana	Rw3G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	501
AccB1I	GGYRCC	1 cut(s)	991
AccII	CGCG	2 cut(s)	390, 1266
AciI	CCGC	8 cut(s)	581, 779, 914, 1032, 1193, 1258, 1264, 1266
AclWI	GGATC	6 cut(s)	406, 478, 616, 949, 1255, 1268
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	3 cut(s)	96, 996, 1128
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	5 cut(s)	215, 644, 814, 874, 1151
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	768
Alw26I	GTCTC	4 cut(s)	390, 764, 914, 1253
AlwI	GGATC	6 cut(s)	406, 478, 616, 949, 1255, 1268
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	243, 257, 750
ApeKI	GCWGC	5 cut(s)	279, 287, 371, 851, 1172
ApoI	RAATTY	1 cut(s)	546
Asp700I	GAANNNNTTC	2 cut(s)	109, 1009
AspS9I	GGNCC	4 cut(s)	120, 257, 673, 751
AsuHPI	GGTGA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	2 cut(s)	120, 673
BamHI	GGATCC	1 cut(s)	1260
BanI	GGYRCC	1 cut(s)	991
BanII	GRGCYC	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	768
BbvI	GCAGC	5 cut(s)	291, 299, 358, 863, 1184
BccI	CCATC	5 cut(s)	48, 762, 904, 1068, 1198
BceAI	ACGGC	1 cut(s)	839
BcoDI	GTCTC	4 cut(s)	390, 764, 914, 1253
BfaI	CTAG	2 cut(s)	276, 726
BfmI	CTRYAG	1 cut(s)	1170
BfuAI	ACCTGC	1 cut(s)	501
BglII	AGATCT	1 cut(s)	575
BisI	GCNGC	7 cut(s)	280, 288, 372, 780, 852, 1032, 1173
BlsI	GCNGC	7 cut(s)	281, 289, 373, 781, 853, 1033, 1174
Bme18I	GGWCC	2 cut(s)	120, 673
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	4 cut(s)	120, 257, 673, 751
BmiI	GGNNCC	4 cut(s)	585, 675, 993, 1262
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	1018
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	1 cut(s)	1235
BpuEI	CTTGAG	4 cut(s)	399, 459, 471, 718
BsaJI	CCNNGG	2 cut(s)	21, 1264
BsaWI	WCCGGW	1 cut(s)	938
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse1I	ACTGG	1 cut(s)	471
Bse3DI	GCAATG	2 cut(s)	554, 663
BseDI	CCNNGG	2 cut(s)	21, 1264
BseGI	GGATG	1 cut(s)	611
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMI	GCAATG	2 cut(s)	554, 663
BseMII	CTCAG	4 cut(s)	212, 315, 639, 753
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	4 cut(s)	341, 712, 793, 932
BseXI	GCAGC	5 cut(s)	291, 299, 358, 863, 1184
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	2 cut(s)	390, 1266
BshFI	GGCC	3 cut(s)	245, 259, 752
BshNI	GGYRCC	1 cut(s)	991
BsiHKAI	GWGCWC	1 cut(s)	768
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	1 cut(s)	939
BslFI	GGGAC	1 cut(s)	1221
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	4 cut(s)	390, 764, 914, 1253
BsmBI	CGTCTC	1 cut(s)	1253
BsmFI	GGGAC	1 cut(s)	1221
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	3 cut(s)	245, 259, 752
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	8 cut(s)	581, 779, 914, 1032, 1193, 1258, 1264, 1266
BspANI	GGCC	3 cut(s)	245, 259, 752
BspCNI	CTCAG	4 cut(s)	211, 316, 638, 754
BspFNI	CGCG	2 cut(s)	390, 1266
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	4 cut(s)	585, 675, 993, 1262
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	6 cut(s)	406, 478, 616, 949, 1255, 1268
BspT107I	GGYRCC	1 cut(s)	991
BsrDI	GCAATG	2 cut(s)	554, 663
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	21, 1264
BssMI	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	3 cut(s)	22, 210, 487
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	5 cut(s)	198, 324, 625, 762, 1240
BstDSI	CCRYGG	2 cut(s)	21, 1264
BstF5I	GGATG	1 cut(s)	611
BstFNI	CGCG	2 cut(s)	390, 1266
BstKTI	GATC	8 cut(s)	222, 361, 401, 473, 578, 611, 944, 1263
BstMAI	GTCTC	4 cut(s)	390, 764, 914, 1253
BstMBI	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 377
BstSFI	CTRYAG	1 cut(s)	1170
BstUI	CGCG	2 cut(s)	390, 1266
BstV1I	GCAGC	5 cut(s)	291, 299, 358, 863, 1184
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	4 cut(s)	398, 470, 575, 1260
BstYI	RGATCY	4 cut(s)	398, 470, 575, 1260
BsuRI	GGCC	3 cut(s)	245, 259, 752
BtgI	CCRYGG	2 cut(s)	21, 1264
BtsCI	GGATG	1 cut(s)	611
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 930
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	597
CciI	TCATGA	1 cut(s)	1102
Cfr13I	GGNCC	4 cut(s)	120, 257, 673, 751
Cfr42I	CCGCGG	1 cut(s)	1267
CseI	GACGC	3 cut(s)	738, 806, 1235
Csp6I	GTAC	1 cut(s)	841
CspCI	CAANNNNNGTGG	2 cut(s)	1170, 1205
CviAII	CATG	2 cut(s)	22, 1103
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	5 cut(s)	198, 324, 625, 762, 1240
DpnI	GATC	8 cut(s)	221, 360, 400, 472, 577, 610, 943, 1262
DpnII	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
Eam1104I	CTCTTC	3 cut(s)	22, 210, 487
EarI	CTCTTC	3 cut(s)	22, 210, 487
EciI	GGCGGA	1 cut(s)	929
Ecl136II	GAGCTC	1 cut(s)	766
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	768
Eco47I	GGWCC	2 cut(s)	120, 673
Eco53kI	GAGCTC	1 cut(s)	766
Eco57I	CTGAAG	3 cut(s)	96, 996, 1128
Eco88I	CYCGRG	1 cut(s)	767
EcoICRI	GAGCTC	1 cut(s)	766
EcoRI	GAATTC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	1253
FaeI	CATG	2 cut(s)	25, 1106
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	1221
FatI	CATG	2 cut(s)	21, 1102
FauI	CCCGC	1 cut(s)	1186
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	7 cut(s)	280, 288, 372, 780, 852, 1032, 1173
FokI	GGATG	1 cut(s)	598
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	7 cut(s)	280, 288, 372, 780, 852, 1032, 1173
FspBI	CTAG	2 cut(s)	276, 726
GluI	GCNGC	7 cut(s)	280, 288, 372, 780, 852, 1032, 1173
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	1235
HaeIII	GGCC	3 cut(s)	245, 259, 752
HapII	CCGG	1 cut(s)	939
HgaI	GACGC	3 cut(s)	738, 806, 1235
Hin1II	CATG	2 cut(s)	25, 1106
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	3 cut(s)	320, 419, 719
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188I	TCNGA	9 cut(s)	37, 115, 201, 325, 454, 628, 759, 970, 1015
Hpy188III	TCNNGA	7 cut(s)	57, 416, 615, 735, 769, 1103, 1252
Hpy8I	GTNNAC	1 cut(s)	859
HpyAV	CCTTC	9 cut(s)	133, 174, 256, 388, 638, 1020, 1086, 1152, 1227
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	2 cut(s)	691, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 377
HpyF3I	CTNAG	5 cut(s)	198, 324, 625, 762, 1240
HpySE526I	ACGT	2 cut(s)	691, 965
Hsp92II	CATG	2 cut(s)	25, 1106
KspI	CCGCGG	1 cut(s)	1267
Kzo9I	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	5 cut(s)	291, 299, 358, 863, 1184
LweI	GCATC	1 cut(s)	1018
MaeI	CTAG	2 cut(s)	276, 726
MaeII	ACGT	2 cut(s)	691, 965
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	8 cut(s)	221, 360, 400, 472, 577, 610, 943, 1262
MboI	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
MflI	RGATCY	4 cut(s)	398, 470, 575, 1260
MhlI	GDGCHC	1 cut(s)	768
MluCI	AATT	2 cut(s)	546, 785
MmeI	TCCRAC	2 cut(s)	163, 1096
MroXI	GAANNNNTTC	2 cut(s)	109, 1009
MseI	TTAA	3 cut(s)	297, 345, 788
MspA1I	CMGCKG	2 cut(s)	1034, 1266
MspI	CCGG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	708
MvnI	CGCG	2 cut(s)	390, 1266
MwoI	GCNNNNNNNGC	2 cut(s)	371, 377
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
NlaIII	CATG	2 cut(s)	25, 1106
NlaIV	GGNNCC	4 cut(s)	585, 675, 993, 1262
PaeR7I	CTCGAG	1 cut(s)	767
PagI	TCATGA	1 cut(s)	1102
PctI	GAATGC	1 cut(s)	708
PdmI	GAANNNNTTC	2 cut(s)	109, 1009
PfeI	GAWTC	3 cut(s)	320, 419, 719
PkrI	GCNGC	7 cut(s)	281, 289, 373, 781, 853, 1033, 1174
Psp124BI	GAGCTC	1 cut(s)	768
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	4 cut(s)	585, 675, 993, 1262
PspPI	GGNCC	4 cut(s)	120, 257, 673, 751
PsrI	GAACNNNNNNTAC	2 cut(s)	824, 856
PstI	CTGCAG	1 cut(s)	1174
PsuI	RGATCY	4 cut(s)	398, 470, 575, 1260
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
SacI	GAGCTC	1 cut(s)	768
SacII	CCGCGG	1 cut(s)	1267
SaqAI	TTAA	3 cut(s)	297, 345, 788
SatI	GCNGC	7 cut(s)	280, 288, 372, 780, 852, 1032, 1173
Sau3AI	GATC	8 cut(s)	219, 358, 398, 470, 575, 608, 941, 1260
Sau96I	GGNCC	4 cut(s)	120, 257, 673, 751
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	1 cut(s)	1018
SfcI	CTRYAG	1 cut(s)	1170
Sfr274I	CTCGAG	1 cut(s)	767
Sfr303I	CCGCGG	1 cut(s)	1267
SgrBI	CCGCGG	1 cut(s)	1267
SinI	GGWCC	2 cut(s)	120, 673
SlaI	CTCGAG	1 cut(s)	767
SmlI	CTYRAG	5 cut(s)	414, 474, 486, 733, 767
SmoI	CTYRAG	5 cut(s)	414, 474, 486, 733, 767
Sse9I	AATT	2 cut(s)	546, 785
SsiI	CCGC	8 cut(s)	581, 779, 914, 1032, 1193, 1258, 1264, 1266
SspMI	CTAG	2 cut(s)	276, 726
SstI	GAGCTC	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	2 cut(s)	694, 968
TaqI	TCGA	2 cut(s)	357, 768
TasI	AATT	2 cut(s)	546, 785
TatI	WGTACW	1 cut(s)	840
TauI	GCSGC	2 cut(s)	782, 1034
TfiI	GAWTC	3 cut(s)	320, 419, 719
Tru1I	TTAA	3 cut(s)	297, 345, 788
Tru9I	TTAA	3 cut(s)	297, 345, 788
TscAI	CASTG	2 cut(s)	289, 930
TseI	GCWGC	5 cut(s)	279, 287, 371, 851, 1172
TspGWI	ACGGA	1 cut(s)	1017
TspRI	CASTG	2 cut(s)	289, 930
VpaK11BI	GGWCC	2 cut(s)	120, 673
XapI	RAATTY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XhoI	CTCGAG	1 cut(s)	767
XmnI	GAANNNNTTC	2 cut(s)	109, 1009
XspI	CTAG	2 cut(s)	276, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.