Rmu_ssc0000028.1_g000005
BZIP Family

Light-inducible protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000028.1
Physical Location & Seq
Forward (+)
25005 .. 28478
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000028.1_g000005.1.cds

Sequence Viewer

Length: 1380 bp
atggatagggtgttctcttccatgggtgaaatgtcagaccatctctggtcttcttcttcttcttgtgcaccagtaccacctggaactaatgtaaatgaagatgaagatgagctttccaaaatgaacaggagcgcttcagagtgggcattccagcgttttctccaacaagaagcctctgtttcaccttcatcttcctcacaagctcaaaatgatgttgaagaaaccaaggtcaatgcaacaagtatggccttaccaaatgggcaaaaccccacaaacactaacagcagtgcggcgtcgtttaaggctcccaatgttcctgttgattctgaggagtaccaggccttcctcaagaccaagctcgatctggcttgtgctgcagtggccttgtctcgtgtaaaggctcccaatgttcctgttgattctgaggagtaccaggccttcctcaagaccaagctcgatctggcttgtgctgctgtggccttgtctcgtgtaaagggatctttagtgaaagctcaagattctgcttctttagctgacagtgggcaacaggcttccgatgctttgcaactcggatctcaagccccctttgaaggagctgggaatgatttatgcaggtcatatgataagaatgctactgcaccacttggaattccttcattgccaacgatacaaagtagatctggggcttcaataaggcaagcaacaagtgcatcatcaagagaactctcagattatgaggaagttgaaggagaaactgcaatgactgaaaatatggaccctactgatgcgaaacgtgtgaggagaatgctctctaatagagaatcagctagacgctcaagaagaagaaagcaggcccatttgactgagcttgagacacaggcatctcaattaagggttgagaactcctctttattgaagcgtctgactgatataaaccagaagtacaatgaagcatctgttgacaacagagttttgagagctgatattgaaacattgagagcaaaggtaaagatggctgaggagacagtgaaaagactaaccggatcaaactctgtgtttcatactatgtcagatgtgtcctcaatcagcatggcaccatttgatggaagcccatcagaaacatcagcagatgctgctgttcccgtgcaagatgacccaaaccatcactatttccaacctgcttccaataactccatgccaactgacttcagaggcaacaatggtctggcagataataccccttcagttgaaaatgcgcagcagacttctgcagcaacatcaaaagaagtggtgggaaacaagatgggacgaacactttccttaccgcgagttgctagcttagagcatctccagaagcggatccgcggtggagagcaatag

Protein Analysis

459

Amino Acids

49.64

Weight (kDa)

5.41

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010782)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1257
Acc36I ACCTGC 2 cut(s) 603, 1186
AccB1I GGYRCC 1 cut(s) 1093
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccII CGCG 2 cut(s) 1327, 1365
AciI CCGC 5 cut(s) 290, 1325, 1357, 1363, 1365
AclWI GGATC 5 cut(s) 505, 580, 1051, 1354, 1367
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 3 cut(s) 120, 1192, 1227
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 4 cut(s) 75, 335, 431, 944
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 590, 1103
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 7 cut(s) 218, 590, 690, 746, 916, 989, 1250
AjnI CCWGG 3 cut(s) 79, 336, 432
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 4 cut(s) 393, 489, 866, 1016
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 5 cut(s) 505, 580, 1051, 1354, 1367
AlwNI CAGNNNCTG 1 cut(s) 1133
Aor51HI AGCGCT 1 cut(s) 133
AoxI GGCC 6 cut(s) 246, 339, 381, 435, 477, 852
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 5 cut(s) 374, 470, 1133, 1258, 1271
ApoI RAATTY 1 cut(s) 648
Asp700I GAANNNNTTC 2 cut(s) 652, 1315
AspLEI GCGC 2 cut(s) 134, 1258
AspS9I GGNCC 2 cut(s) 775, 853
AsuHPI GGTGA 2 cut(s) 38, 174
AsuNHI GCTAGC 1 cut(s) 1334
AvaII GGWCC 1 cut(s) 775
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 1359
BanI GGYRCC 1 cut(s) 1093
BarI GAAGNNNNNNTAC 4 cut(s) 326, 358, 422, 454
BauI CACGAG 2 cut(s) 390, 486
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 5 cut(s) 361, 457, 1120, 1270, 1283
BccI CCATC 6 cut(s) 48, 1006, 1097, 1120, 1170, 1297
BciT130I CCWGG 3 cut(s) 81, 338, 434
BcoDI GTCTC 4 cut(s) 393, 489, 866, 1016
BfaI CTAG 2 cut(s) 828, 1335
BfmI CTRYAG 2 cut(s) 375, 1269
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 603, 1186
BglII AGATCT 1 cut(s) 677
BisI GCNGC 6 cut(s) 291, 375, 471, 1134, 1259, 1272
BlsI GCNGC 6 cut(s) 292, 376, 472, 1135, 1260, 1273
Bme1390I CCNGG 3 cut(s) 81, 338, 434
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 775, 853
BmiI GGNNCC 5 cut(s) 306, 402, 777, 1095, 1361
BmrFI CCNGG 3 cut(s) 81, 338, 434
BmsI GCATC 7 cut(s) 547, 719, 775, 890, 962, 1120, 1354
BmtI GCTAGC 1 cut(s) 1338
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 890, 922
BpmI CTGGAG 1 cut(s) 1334
Bpu10I CCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 6 cut(s) 332, 428, 498, 561, 820, 890
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 21, 225, 1363
BsaWI WCCGGW 1 cut(s) 1040
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 1103
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 2 cut(s) 656, 765
BseBI CCWGG 3 cut(s) 81, 338, 434
BseDI CCNNGG 3 cut(s) 21, 225, 1363
BseLI CCNNNNNNNGG 2 cut(s) 590, 1103
BseMI GCAATG 2 cut(s) 656, 765
BseMII CTCAG 5 cut(s) 318, 414, 741, 855, 1008
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 5 cut(s) 344, 440, 814, 895, 1034
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 5 cut(s) 361, 457, 1120, 1270, 1283
BseYI CCCAGC 1 cut(s) 596
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 2 cut(s) 1327, 1365
BshFI GGCC 6 cut(s) 248, 341, 383, 437, 479, 854
BshNI GGYRCC 1 cut(s) 1093
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 1041
BslFI GGGAC 1 cut(s) 1320
BslI CCNNNNNNNGG 2 cut(s) 590, 1103
BsmAI GTCTC 4 cut(s) 393, 489, 866, 1016
BsmFI GGGAC 1 cut(s) 1320
BsmI GAATGC 3 cut(s) 146, 634, 810
BsnI GGCC 6 cut(s) 248, 341, 383, 437, 479, 854
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 290, 1325, 1357, 1363, 1365
BspANI GGCC 6 cut(s) 248, 341, 383, 437, 479, 854
BspCNI CTCAG 5 cut(s) 319, 415, 740, 856, 1009
BspFNI CGCG 2 cut(s) 1327, 1365
BspLI GGNNCC 5 cut(s) 306, 402, 777, 1095, 1361
BspMAI CTGCAG 2 cut(s) 379, 1273
BspMI ACCTGC 2 cut(s) 603, 1186
BspOI GCTAGC 1 cut(s) 1338
BspPI GGATC 5 cut(s) 505, 580, 1051, 1354, 1367
BspT107I GGYRCC 1 cut(s) 1093
BsrDI GCAATG 2 cut(s) 656, 765
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 21, 225, 1363
BssMI GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
BssNI GRCGYC 1 cut(s) 293
BssSI CACGAG 2 cut(s) 390, 486
BssT1I CCWWGG 2 cut(s) 21, 225
Bst2BI CACGAG 2 cut(s) 390, 486
Bst2UI CCWGG 3 cut(s) 81, 338, 434
Bst4CI ACNGT 2 cut(s) 539, 1027
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 293
BstAPI GCANNNNNTGC 2 cut(s) 707, 1133
BstC8I GCNNGC 3 cut(s) 699, 852, 1336
BstDEI CTNAG 6 cut(s) 327, 423, 727, 864, 1017, 1339
BstDSI CCRYGG 2 cut(s) 21, 1363
BstFNI CGCG 2 cut(s) 1327, 1365
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 1258
BstKTI GATC 7 cut(s) 364, 460, 500, 575, 680, 1046, 1362
BstMAI GTCTC 4 cut(s) 393, 489, 866, 1016
BstMBI GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
BstMWI GCNNNNNNNGC 8 cut(s) 374, 380, 470, 476, 530, 557, 707, 1133
BstNI CCWGG 3 cut(s) 81, 338, 434
BstSCI CCNGG 3 cut(s) 79, 336, 432
BstSFI CTRYAG 2 cut(s) 375, 1269
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 1327, 1365
BstV1I GCAGC 5 cut(s) 361, 457, 1120, 1270, 1283
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 4 cut(s) 497, 572, 677, 1359
BstYI RGATCY 4 cut(s) 497, 572, 677, 1359
BsuRI GGCC 6 cut(s) 248, 341, 383, 437, 479, 854
BtgI CCRYGG 2 cut(s) 21, 1363
BtsI GCAGTG 2 cut(s) 292, 384
BtsIMutI CAGTG 4 cut(s) 292, 384, 544, 1032
BveI ACCTGC 2 cut(s) 603, 1186
Cac8I GCNNGC 3 cut(s) 699, 852, 1336
CaiI CAGNNNCTG 1 cut(s) 1133
CfoI GCGC 2 cut(s) 134, 1258
Cfr13I GGNCC 2 cut(s) 775, 853
Cfr42I CCGCGG 1 cut(s) 1366
CseI GACGC 3 cut(s) 282, 840, 908
Csp6I GTAC 4 cut(s) 74, 334, 430, 943
CspCI CAANNNNNGTGG 2 cut(s) 1269, 1304
CviAII CATG 3 cut(s) 22, 1090, 1195
CviQI GTAC 4 cut(s) 74, 334, 430, 943
DdeI CTNAG 6 cut(s) 327, 423, 727, 864, 1017, 1339
DpnI GATC 7 cut(s) 363, 459, 499, 574, 679, 1045, 1361
DpnII GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 21, 225
Eco147I AGGCCT 2 cut(s) 341, 437
Eco47I GGWCC 1 cut(s) 775
Eco47III AGCGCT 1 cut(s) 133
Eco57I CTGAAG 3 cut(s) 120, 1192, 1227
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 3 cut(s) 79, 336, 432
EcoT14I CCWWGG 2 cut(s) 21, 225
ErhI CCWWGG 2 cut(s) 21, 225
FaeI CATG 3 cut(s) 25, 1093, 1198
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 1320
FatI CATG 3 cut(s) 21, 1089, 1194
FauNDI CATATG 1 cut(s) 619
Fnu4HI GCNGC 6 cut(s) 291, 375, 471, 1134, 1259, 1272
Fsp4HI GCNGC 6 cut(s) 291, 375, 471, 1134, 1259, 1272
FspBI CTAG 2 cut(s) 828, 1335
FspI TGCGCA 1 cut(s) 1257
GlaI GCGC 2 cut(s) 133, 1257
GluI GCNGC 6 cut(s) 291, 375, 471, 1134, 1259, 1272
GsaI CCCAGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 1334
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 6 cut(s) 248, 341, 383, 437, 479, 854
HapII CCGG 1 cut(s) 1041
HgaI GACGC 3 cut(s) 282, 840, 908
HhaI GCGC 2 cut(s) 134, 1258
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 3 cut(s) 25, 1093, 1198
Hin6I GCGC 2 cut(s) 132, 1256
HinP1I GCGC 2 cut(s) 132, 1256
HincII GTYRAC 1 cut(s) 961
HindII GTYRAC 1 cut(s) 961
HinfI GANTC 4 cut(s) 323, 419, 518, 821
HpaII CCGG 1 cut(s) 1041
HphI GGTGA 2 cut(s) 38, 174
Hpy166II GTNNAC 2 cut(s) 68, 961
Hpy188III TCNNGA 6 cut(s) 349, 445, 515, 717, 837, 1351
Hpy8I GTNNAC 2 cut(s) 68, 961
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 7 cut(s) 195, 352, 448, 584, 663, 740, 1251
HpyCH4III ACNGT 2 cut(s) 539, 1027
HpyCH4IV ACGT 1 cut(s) 793
HpyF10VI GCNNNNNNNGC 8 cut(s) 374, 380, 470, 476, 530, 557, 707, 1133
HpyF3I CTNAG 6 cut(s) 327, 423, 727, 864, 1017, 1339
HpySE526I ACGT 1 cut(s) 793
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 3 cut(s) 25, 1093, 1198
HspAI GCGC 2 cut(s) 132, 1256
KspI CCGCGG 1 cut(s) 1366
Kzo9I GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
LmnI GCTCC 4 cut(s) 129, 310, 406, 593
Lsp1109I GCAGC 5 cut(s) 361, 457, 1120, 1270, 1283
LweI GCATC 7 cut(s) 547, 719, 775, 890, 962, 1120, 1354
MaeI CTAG 2 cut(s) 828, 1335
MaeII ACGT 1 cut(s) 793
MalI GATC 7 cut(s) 363, 459, 499, 574, 679, 1045, 1361
MboI GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
MflI RGATCY 4 cut(s) 497, 572, 677, 1359
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 648, 887
MmeI TCCRAC 2 cut(s) 187, 1198
MroXI GAANNNNTTC 2 cut(s) 652, 1315
MseI TTAA 2 cut(s) 300, 890
MspA1I CMGCKG 1 cut(s) 1365
MspI CCGG 1 cut(s) 1041
MspR9I CCNGG 3 cut(s) 81, 338, 434
Mva1269I GAATGC 3 cut(s) 146, 634, 810
MvaI CCWGG 3 cut(s) 81, 338, 434
MvnI CGCG 2 cut(s) 1327, 1365
MwoI GCNNNNNNNGC 8 cut(s) 374, 380, 470, 476, 530, 557, 707, 1133
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 619
NdeII GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
NheI GCTAGC 1 cut(s) 1334
NlaIII CATG 3 cut(s) 25, 1093, 1198
NlaIV GGNNCC 5 cut(s) 306, 402, 777, 1095, 1361
NsbI TGCGCA 1 cut(s) 1257
PceI AGGCCT 2 cut(s) 341, 437
PctI GAATGC 3 cut(s) 146, 634, 810
PdmI GAANNNNTTC 2 cut(s) 652, 1315
PfeI GAWTC 4 cut(s) 323, 419, 518, 821
PflMI CCANNNNNTGG 1 cut(s) 1103
PkrI GCNGC 6 cut(s) 292, 376, 472, 1135, 1260, 1273
Psp6I CCWGG 3 cut(s) 79, 336, 432
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 3 cut(s) 79, 336, 432
PspN4I GGNNCC 5 cut(s) 306, 402, 777, 1095, 1361
PspPI GGNCC 2 cut(s) 775, 853
PstI CTGCAG 2 cut(s) 379, 1273
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 4 cut(s) 497, 572, 677, 1359
RsaI GTAC 4 cut(s) 75, 335, 431, 944
RsaNI GTAC 4 cut(s) 74, 334, 430, 943
SacII CCGCGG 1 cut(s) 1366
SaqAI TTAA 2 cut(s) 300, 890
SatI GCNGC 6 cut(s) 291, 375, 471, 1134, 1259, 1272
Sau3AI GATC 7 cut(s) 361, 457, 497, 572, 677, 1043, 1359
Sau96I GGNCC 2 cut(s) 775, 853
ScrFI CCNGG 3 cut(s) 81, 338, 434
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 7 cut(s) 547, 719, 775, 890, 962, 1120, 1354
SfcI CTRYAG 2 cut(s) 375, 1269
Sfr303I CCGCGG 1 cut(s) 1366
SgrBI CCGCGG 1 cut(s) 1366
SinI GGWCC 1 cut(s) 775
SmlI CTYRAG 6 cut(s) 347, 443, 513, 576, 835, 869
SmoI CTYRAG 6 cut(s) 347, 443, 513, 576, 835, 869
Sse9I AATT 2 cut(s) 648, 887
SseBI AGGCCT 2 cut(s) 341, 437
SsiI CCGC 5 cut(s) 290, 1325, 1357, 1363, 1365
SspMI CTAG 2 cut(s) 828, 1335
StuI AGGCCT 2 cut(s) 341, 437
StyD4I CCNGG 3 cut(s) 79, 336, 432
StyI CCWWGG 2 cut(s) 21, 225
TaaI ACNGT 2 cut(s) 539, 1027
TaiI ACGT 1 cut(s) 796
TaqI TCGA 2 cut(s) 360, 456
TasI AATT 2 cut(s) 648, 887
TatI WGTACW 1 cut(s) 942
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 4 cut(s) 323, 419, 518, 821
Tru1I TTAA 2 cut(s) 300, 890
Tru9I TTAA 2 cut(s) 300, 890
TscAI CASTG 4 cut(s) 292, 384, 544, 1032
TseI GCWGC 5 cut(s) 374, 470, 1133, 1258, 1271
TspDTI ATGAA 7 cut(s) 111, 117, 137, 177, 645, 963, 1049
TspRI CASTG 4 cut(s) 292, 384, 544, 1032
Van91I CCANNNNNTGG 1 cut(s) 1103
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 1 cut(s) 648
XcmI CCANNNNNNNNNTGG 2 cut(s) 361, 457
XmnI GAANNNNTTC 2 cut(s) 652, 1315
XspI CTAG 2 cut(s) 828, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.