RLG00000025686
BZIP Family

Light-inducible protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
47628302 .. 47631288
2987 bp
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UTR
Exon/CDS
Intron
RLM00000025686

Sequence Viewer

Length: 1281 bp
ATGGATAGGGCGTTCTCTTCCATGGGTGAAATGTCAGACCATCTCTGGTCTTCTTCTTCTTCTTCTGCACCAGTACCACCTGGAACTAATGTAAATGAACATGAAGATGAGCTTTCCAAACTGAACAGGAGCGCTTCTGAGTGGGCCTTCCAGCGTTTTCTCCAACAAGAAGCCTCTGTTTCACCTTCATCTTCCTCACAAGCTCAAAATGATGTTGAAGAAACCAAGGTCAATGCAACAAGTATGGCCTTACCAAATGGGACAAACCCCACAAAAACTAACAGCAGTGCGGCGTCGTTTAAGGCTCCTAATGTTCCTGTTGATTCTGAGGAGTACCAGGCCTTCCTCAAGACCAAGCTCGATCTGGCTTGTGCTGCTGTGGCCTTGTCTCGTGTAAAGGGATCTTTAGTGAAAGCTCAAGATTCTGCTTCTTTAGCTGACAGTGGGCAACAGGCTTCTGATGCTTTGCAACTGGGATCTCAAGCCCCGTTTGAAGGAGCTGGGAATGATTTATGCAGGTCATATGATAAGAATGCTACTGCACCACTTGGAACTCCGTCATTGCCAATACAATGTAGATCTGGGGCTTCAATAAGGCAAGCAACAAGTGGATCATCAAGAGAACTCTCTGATTATGAGGAAGTTGAAGGAGAAACTGCAGTGACTGAAAATATGGACCCTACTGATGCGAAACGTGTAAGGAGAATGCTCTCTAATAGAGAATCAGCTAGACGCTCAAGAAGAAGAAAGCAGGCCCATTTGACTGAGCTTGAGACACAGGCATCTCAATTAAGAGTTGAGAACTCCTCTTTATTGAAGCGTCTGACTGATATAAACCAGAAGTACAATGAAGCATCTGTTGACAACCGAGTTTTGAGAGCTGATATTGAAACATTGAGAGCAAAGGTAAAGATGGCTGAGGAGACAGTGAAAAGACTAACCGGATCAAACTCTGTGTTTCATACTATGTCAGATGTGTCCTCAATCAGCATGGCACCATTTGATGGAAGCCCATCAGAAACATCAGCAGATGCTGCTGTTCCCGTGCAAGATGACCCAAACCATCACTATTTCCAGCCTGCTTCCAATAACTCCATGCCAACTGACTTCAGAGGCAACAATGGTTTGGCAGATAATACCCCTTCAGTTGAAAATGCGCAGCATTCTTCTGCAGCAACATCAACAGAAGTGGTGGGAAACAAGATGGGACGAACACTTTCCTTACAGCGAGTTGCTAGCTTAGAGCATCTCCAGAAGCGGATCCGCGGTGGAGAGCAATAG

Protein Analysis

427

Amino Acids

46.01

Weight (kDa)

5.63

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 228 - 277 1.6e-07 Basic region leucine zipper
bZIP_1 PF00170 230 - 283 1.3e-12 bZIP transcription factor
bZIP_C PF12498 298 - 424 2.7e-43 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010782)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1158
Acc36I ACCTGC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 994
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccII CGCG 1 cut(s) 1266
AciI CCGC 4 cut(s) 290, 1258, 1264, 1266
AclWI GGATC 6 cut(s) 409, 484, 619, 952, 1255, 1268
AcuI CTGAAG 2 cut(s) 1093, 1128
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 3 cut(s) 75, 335, 845
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 494, 1004
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 7 cut(s) 218, 494, 591, 647, 817, 890, 1151
AjnI CCWGG 2 cut(s) 79, 336
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw26I GTCTC 3 cut(s) 393, 767, 917
AlwI GGATC 6 cut(s) 409, 484, 619, 952, 1255, 1268
AlwNI CAGNNNCTG 2 cut(s) 665, 1034
Aor51HI AGCGCT 1 cut(s) 133
AoxI GGCC 5 cut(s) 144, 246, 339, 381, 753
ApeKI GCWGC 4 cut(s) 374, 1034, 1159, 1172
Asp700I GAANNNNTTC 1 cut(s) 1216
AspLEI GCGC 2 cut(s) 134, 1159
AspS9I GGNCC 3 cut(s) 144, 676, 754
AsuHPI GGTGA 2 cut(s) 38, 174
AsuNHI GCTAGC 1 cut(s) 1235
AvaII GGWCC 1 cut(s) 676
BamHI GGATCC 1 cut(s) 1260
BanI GGYRCC 1 cut(s) 994
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 4 cut(s) 361, 1021, 1171, 1184
BccI CCATC 6 cut(s) 48, 907, 998, 1021, 1071, 1198
BciT130I CCWGG 2 cut(s) 81, 338
BcoDI GTCTC 3 cut(s) 393, 767, 917
BfaI CTAG 2 cut(s) 729, 1236
BfmI CTRYAG 2 cut(s) 657, 1170
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 507
BglII AGATCT 1 cut(s) 578
BisI GCNGC 5 cut(s) 291, 375, 1035, 1160, 1173
BlsI GCNGC 5 cut(s) 292, 376, 1036, 1161, 1174
Bme1390I CCNGG 2 cut(s) 81, 338
Bme18I GGWCC 1 cut(s) 676
BmgT120I GGNCC 3 cut(s) 144, 676, 754
BmiI GGNNCC 4 cut(s) 306, 678, 996, 1262
BmrFI CCNGG 2 cut(s) 81, 338
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 6 cut(s) 451, 676, 791, 863, 1021, 1255
BmtI GCTAGC 1 cut(s) 1239
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 791, 823
BpmI CTGGAG 1 cut(s) 1235
Bpu10I CCTNAGC 1 cut(s) 918
BpuEI CTTGAG 5 cut(s) 332, 402, 465, 721, 791
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 21, 225, 1264
BsaWI WCCGGW 1 cut(s) 941
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 1004
Bse1I ACTGG 2 cut(s) 71, 477
Bse3DI GCAATG 1 cut(s) 560
BseBI CCWGG 2 cut(s) 81, 338
BseDI CCNNGG 3 cut(s) 21, 225, 1264
BseLI CCNNNNNNNGG 2 cut(s) 494, 1004
BseMI GCAATG 1 cut(s) 560
BseMII CTCAG 4 cut(s) 129, 318, 756, 909
BseNI ACTGG 2 cut(s) 71, 477
BseRI GAGGAG 3 cut(s) 344, 796, 935
BseXI GCAGC 4 cut(s) 361, 1021, 1171, 1184
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 2 cut(s) 51, 525
Bsh1236I CGCG 1 cut(s) 1266
BshFI GGCC 5 cut(s) 146, 248, 341, 383, 755
BshNI GGYRCC 1 cut(s) 994
BsiSI CCGG 1 cut(s) 942
BslFI GGGAC 2 cut(s) 274, 1221
BslI CCNNNNNNNGG 2 cut(s) 494, 1004
BsmAI GTCTC 3 cut(s) 393, 767, 917
BsmFI GGGAC 2 cut(s) 274, 1221
BsmI GAATGC 3 cut(s) 538, 711, 1162
BsnI GGCC 5 cut(s) 146, 248, 341, 383, 755
Bsp143I GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 4 cut(s) 290, 1258, 1264, 1266
BspANI GGCC 5 cut(s) 146, 248, 341, 383, 755
BspCNI CTCAG 4 cut(s) 130, 319, 757, 910
BspFNI CGCG 1 cut(s) 1266
BspLI GGNNCC 4 cut(s) 306, 678, 996, 1262
BspMAI CTGCAG 2 cut(s) 661, 1174
BspMI ACCTGC 1 cut(s) 507
BspOI GCTAGC 1 cut(s) 1239
BspPI GGATC 6 cut(s) 409, 484, 619, 952, 1255, 1268
BspT107I GGYRCC 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 560
BsrI ACTGG 2 cut(s) 71, 477
BssECI CCNNGG 3 cut(s) 21, 225, 1264
BssMI GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
BssNI GRCGYC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 21, 225
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 81, 338
Bst4CI ACNGT 2 cut(s) 443, 928
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstC8I GCNNGC 4 cut(s) 600, 753, 1080, 1237
BstDEI CTNAG 5 cut(s) 138, 327, 765, 918, 1240
BstDSI CCRYGG 2 cut(s) 21, 1264
BstFNI CGCG 1 cut(s) 1266
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 1159
BstKTI GATC 7 cut(s) 364, 404, 479, 581, 614, 947, 1263
BstMAI GTCTC 3 cut(s) 393, 767, 917
BstMBI GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
BstMWI GCNNNNNNNGC 5 cut(s) 374, 380, 434, 461, 1034
BstNI CCWGG 2 cut(s) 81, 338
BstSCI CCNGG 2 cut(s) 79, 336
BstSFI CTRYAG 2 cut(s) 657, 1170
BstUI CGCG 1 cut(s) 1266
BstV1I GCAGC 4 cut(s) 361, 1021, 1171, 1184
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 4 cut(s) 401, 476, 578, 1260
BstYI RGATCY 4 cut(s) 401, 476, 578, 1260
BsuRI GGCC 5 cut(s) 146, 248, 341, 383, 755
BtgI CCRYGG 2 cut(s) 21, 1264
BtsI GCAGTG 2 cut(s) 292, 666
BtsIMutI CAGTG 4 cut(s) 292, 448, 666, 933
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 4 cut(s) 600, 753, 1080, 1237
CaiI CAGNNNCTG 2 cut(s) 665, 1034
CfoI GCGC 2 cut(s) 134, 1159
Cfr13I GGNCC 3 cut(s) 144, 676, 754
Cfr42I CCGCGG 1 cut(s) 1267
CseI GACGC 3 cut(s) 282, 741, 809
Csp6I GTAC 3 cut(s) 74, 334, 844
CspCI CAANNNNNGTGG 2 cut(s) 1170, 1205
CviAII CATG 4 cut(s) 22, 101, 991, 1096
CviQI GTAC 3 cut(s) 74, 334, 844
DdeI CTNAG 5 cut(s) 138, 327, 765, 918, 1240
DpnI GATC 7 cut(s) 363, 403, 478, 580, 613, 946, 1262
DpnII GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 21, 225
Eco147I AGGCCT 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 676
Eco47III AGCGCT 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 1093, 1128
EcoRII CCWGG 2 cut(s) 79, 336
EcoT14I CCWWGG 2 cut(s) 21, 225
ErhI CCWWGG 2 cut(s) 21, 225
FaeI CATG 4 cut(s) 25, 104, 994, 1099
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 2 cut(s) 274, 1221
FatI CATG 4 cut(s) 21, 100, 990, 1095
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 291, 375, 1035, 1160, 1173
Fsp4HI GCNGC 5 cut(s) 291, 375, 1035, 1160, 1173
FspBI CTAG 2 cut(s) 729, 1236
FspI TGCGCA 1 cut(s) 1158
GlaI GCGC 2 cut(s) 133, 1158
GluI GCNGC 5 cut(s) 291, 375, 1035, 1160, 1173
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 1235
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 5 cut(s) 146, 248, 341, 383, 755
HapII CCGG 1 cut(s) 942
HgaI GACGC 3 cut(s) 282, 741, 809
HhaI GCGC 2 cut(s) 134, 1159
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 4 cut(s) 25, 104, 994, 1099
Hin6I GCGC 2 cut(s) 132, 1157
HinP1I GCGC 2 cut(s) 132, 1157
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 3 cut(s) 323, 422, 722
HpaII CCGG 1 cut(s) 942
HphI GGTGA 2 cut(s) 38, 174
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 9 cut(s) 37, 139, 328, 460, 631, 825, 973, 1018, 1112
Hpy188III TCNNGA 5 cut(s) 349, 419, 618, 738, 1252
Hpy8I GTNNAC 1 cut(s) 862
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 6 cut(s) 157, 195, 352, 488, 641, 1152
HpyCH4III ACNGT 2 cut(s) 443, 928
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 8 cut(s) 68, 236, 469, 516, 542, 659, 1048, 1172
HpyF10VI GCNNNNNNNGC 5 cut(s) 374, 380, 434, 461, 1034
HpyF3I CTNAG 5 cut(s) 138, 327, 765, 918, 1240
HpySE526I ACGT 1 cut(s) 694
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 4 cut(s) 25, 104, 994, 1099
HspAI GCGC 2 cut(s) 132, 1157
KspI CCGCGG 1 cut(s) 1267
Kzo9I GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
LmnI GCTCC 3 cut(s) 129, 310, 497
Lsp1109I GCAGC 4 cut(s) 361, 1021, 1171, 1184
LweI GCATC 6 cut(s) 451, 676, 791, 863, 1021, 1255
MaeI CTAG 2 cut(s) 729, 1236
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 1 cut(s) 661
MalI GATC 7 cut(s) 363, 403, 478, 580, 613, 946, 1262
MboI GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
MflI RGATCY 4 cut(s) 401, 476, 578, 1260
MluCI AATT 1 cut(s) 788
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 9 cut(s) 184, 205, 322, 356, 631, 817, 913, 991, 1106
MroXI GAANNNNTTC 1 cut(s) 1216
MseI TTAA 2 cut(s) 300, 791
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 1266
MspI CCGG 1 cut(s) 942
MspR9I CCNGG 2 cut(s) 81, 338
Mva1269I GAATGC 3 cut(s) 538, 711, 1162
MvaI CCWGG 2 cut(s) 81, 338
MvnI CGCG 1 cut(s) 1266
MwoI GCNNNNNNNGC 5 cut(s) 374, 380, 434, 461, 1034
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 523
NdeII GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
NheI GCTAGC 1 cut(s) 1235
NlaIII CATG 4 cut(s) 25, 104, 994, 1099
NlaIV GGNNCC 4 cut(s) 306, 678, 996, 1262
NmuCI GTSAC 1 cut(s) 661
NsbI TGCGCA 1 cut(s) 1158
PceI AGGCCT 1 cut(s) 341
PctI GAATGC 3 cut(s) 538, 711, 1162
PdmI GAANNNNTTC 1 cut(s) 1216
PfeI GAWTC 3 cut(s) 323, 422, 722
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 5 cut(s) 292, 376, 1036, 1161, 1174
Psp6I CCWGG 2 cut(s) 79, 336
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 79, 336
PspN4I GGNNCC 4 cut(s) 306, 678, 996, 1262
PspPI GGNCC 3 cut(s) 144, 676, 754
PstI CTGCAG 2 cut(s) 661, 1174
PstNI CAGNNNCTG 2 cut(s) 665, 1034
PsuI RGATCY 4 cut(s) 401, 476, 578, 1260
RsaI GTAC 3 cut(s) 75, 335, 845
RsaNI GTAC 3 cut(s) 74, 334, 844
RseI CAYNNNNRTG 1 cut(s) 105
SacII CCGCGG 1 cut(s) 1267
SaqAI TTAA 2 cut(s) 300, 791
SatI GCNGC 5 cut(s) 291, 375, 1035, 1160, 1173
Sau3AI GATC 7 cut(s) 361, 401, 476, 578, 611, 944, 1260
Sau96I GGNCC 3 cut(s) 144, 676, 754
ScrFI CCNGG 2 cut(s) 81, 338
SfaNI GCATC 6 cut(s) 451, 676, 791, 863, 1021, 1255
SfcI CTRYAG 2 cut(s) 657, 1170
Sfr303I CCGCGG 1 cut(s) 1267
SgrBI CCGCGG 1 cut(s) 1267
SinI GGWCC 1 cut(s) 676
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 5 cut(s) 347, 417, 480, 736, 770
SmoI CTYRAG 5 cut(s) 347, 417, 480, 736, 770
Sse9I AATT 1 cut(s) 788
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 4 cut(s) 290, 1258, 1264, 1266
SspMI CTAG 2 cut(s) 729, 1236
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 79, 336
StyI CCWWGG 2 cut(s) 21, 225
TaaI ACNGT 2 cut(s) 443, 928
TaiI ACGT 1 cut(s) 697
TaqI TCGA 1 cut(s) 360
TasI AATT 1 cut(s) 788
TatI WGTACW 1 cut(s) 843
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 3 cut(s) 323, 422, 722
Tru1I TTAA 2 cut(s) 300, 791
Tru9I TTAA 2 cut(s) 300, 791
TscAI CASTG 4 cut(s) 292, 448, 666, 933
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 4 cut(s) 374, 1034, 1159, 1172
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 5 cut(s) 111, 117, 177, 864, 950
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 4 cut(s) 292, 448, 666, 933
Van91I CCANNNNNTGG 1 cut(s) 1004
VpaK11BI GGWCC 1 cut(s) 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 1216
XspI CTAG 2 cut(s) 729, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.