AT5G28820
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018272
Physical Location & Seq
Forward (+)
10831799 .. 10832532
734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28820.1

Sequence Viewer

Length: 519 bp
ATGAAGATCTTGAAGGGTATGTACAAAAGCTTGTTTGATCTTCTTCGTTTCAGTTTTGGGTTAGGGTGGGATCCTACAACGAAGAAATTCACGGCTAGAGATGATGTATGGGATGACTATTTGAAGGATTTAAGAATGATATTTGGATTGAATGTGGCAACTGGACAAAATGTTGTGGGATTAGGCGATTCCATTGTTGTCGATGCTTCTCAAGTTGGAGATGATGATGGGCCACATGATTTAAGTCATGTCCAAATATTAGATGATATGGGGGGATCCCATGACGTTTTCTCATCATTAGAGAAAAGAAGGGCTGAATCGATGCAAGAAGCTGAAGAAAAGGAAGTCGAAGACAAAGCTAATAATGTGTGGGATGCTATCAAAGAAATTTCAGATTTGGATGCAGATTTATGTTACGAGACCATGACATTGGTTGACAGTTTAGGTATGAAATCTGTATTTGTGCACATGTCAACAGAACAACATAAGGGATGGATTATGCGAAGCCTTCGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

172

Amino Acids

19.47

Weight (kDa)

4.73

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 123 - 168 1.7e-21 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 65, 78, 270, 283
AcsI RAATTY 2 cut(s) 86, 387
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 3 cut(s) 13, 124, 151
AluBI AGCT 3 cut(s) 30, 332, 359
AluI AGCT 3 cut(s) 30, 332, 359
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 4 cut(s) 65, 78, 270, 283
AoxI GGCC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 86, 387
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 468
BamHI GGATCC 2 cut(s) 70, 275
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 468
BccI CCATC 2 cut(s) 221, 486
BceAI ACGGC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 96
BglII AGATCT 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 72, 277
BmsI GCATC 4 cut(s) 193, 312, 364, 391
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 195
Bsa29I ATCGAT 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 320
BseGI GGATG 4 cut(s) 118, 379, 406, 497
BseNI ACTGG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 468
BshFI GGCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 413
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 6, 37, 70, 275
BspANI GGCC 1 cut(s) 232
BspDI ATCGAT 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 72, 277
BspPI GGATC 4 cut(s) 65, 78, 270, 283
BspTNI GGTCTC 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 166
BssMI GATC 4 cut(s) 6, 37, 70, 275
Bst4CI ACNGT 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 21
BstF5I GGATG 4 cut(s) 118, 379, 406, 497
BstKTI GATC 4 cut(s) 9, 40, 73, 278
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 6, 37, 70, 275
BstNSI RCATGY 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 3 cut(s) 6, 70, 275
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 3 cut(s) 6, 70, 275
Bsu15I ATCGAT 1 cut(s) 320
BsuRI GGCC 1 cut(s) 232
BsuTUI ATCGAT 1 cut(s) 320
BtsCI GGATG 4 cut(s) 118, 379, 406, 497
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 1 cut(s) 22
CviAII CATG 5 cut(s) 236, 248, 281, 424, 469
CviJI RGCY 7 cut(s) 30, 95, 232, 314, 332, 359, 507
CviKI_1 RGCY 7 cut(s) 30, 95, 232, 314, 332, 359, 507
CviQI GTAC 1 cut(s) 22
DpnI GATC 4 cut(s) 8, 39, 72, 277
DpnII GATC 4 cut(s) 6, 37, 70, 275
Eco31I GGTCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 354
FaeI CATG 5 cut(s) 239, 251, 284, 427, 472
FatI CATG 5 cut(s) 235, 247, 280, 423, 468
FokI GGATG 4 cut(s) 125, 386, 413, 504
FspBI CTAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 5 cut(s) 239, 251, 284, 427, 472
HincII GTYRAC 2 cut(s) 436, 474
HindII GTYRAC 2 cut(s) 436, 474
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 2 cut(s) 188, 317
Hpy166II GTNNAC 3 cut(s) 436, 466, 474
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 3 cut(s) 436, 466, 474
HpyAV CCTTC 4 cut(s) 7, 118, 303, 518
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 325, 404, 466
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 5 cut(s) 239, 251, 284, 427, 472
Kzo9I GATC 4 cut(s) 6, 37, 70, 275
LpnPI CCDG 1 cut(s) 147
LweI GCATC 4 cut(s) 193, 312, 364, 391
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 8, 39, 72, 277
MboI GATC 4 cut(s) 6, 37, 70, 275
MboII GAAGA 6 cut(s) 16, 32, 35, 94, 347, 362
MflI RGATCY 3 cut(s) 6, 70, 275
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 2 cut(s) 86, 387
MmeI TCCRAC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 131, 242
NdeII GATC 4 cut(s) 6, 37, 70, 275
NlaIII CATG 5 cut(s) 239, 251, 284, 427, 472
NlaIV GGNNCC 2 cut(s) 72, 277
NspI RCATGY 1 cut(s) 472
PciI ACATGT 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 188, 317
PscI ACATGT 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 72, 277
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 3 cut(s) 6, 70, 275
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 131, 242
Sau3AI GATC 4 cut(s) 6, 37, 70, 275
Sau96I GGNCC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 468
SetI ASST 5 cut(s) 32, 288, 334, 361, 448
SfaNI GCATC 4 cut(s) 193, 312, 364, 391
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 2 cut(s) 86, 387
SspI AATATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 201, 320, 348
TasI AATT 2 cut(s) 86, 387
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 2 cut(s) 188, 317
Tru1I TTAA 2 cut(s) 131, 242
Tru9I TTAA 2 cut(s) 131, 242
TspDTI ATGAA 2 cut(s) 17, 464
VneI GTGCAC 1 cut(s) 464
XapI RAATTY 2 cut(s) 86, 387
XceI RCATGY 1 cut(s) 472
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.