Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0018272

Physical Location & Seq

Genomic Coordinates Forward (+)

8863932 .. 8865000

Gene Structure 1069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAAGGATTCACAACAAGGAAAGAACAAAGGAAAAGGCAAAAGTTCCGATAATTATGAACTTTGGACCAAGGAAGAAAGCGATTGCATGTTAGAGCTATTGGTTGATGGTATCAGTCGAGGATGGCGTGAAACTAATGGAGTAATTCCTCGCCTAAATGAGAAAACTATGTCTCCTAAAACATATAACAATATCGTGAGCCGAATGAGATGGTATAAGAGGCAATTTGACAAAATGACTACTCTTATGCGTAACAACTTTGGATTTGGGTGGGACCCAATTACAAACAAGTTCACGGCTAGTGATGAAGTATGGGAAAATTACTTGAAGTCCCACCCAAGTCACAAGAACCTTCAGACAGAAAGTGTTGCTAATTATGATGATTTAAAAATTATGGTTGGGGGTGCAACTGCTACTGGGAATGGTTCACTTGCATTAGGTGTTAATGATACCGATGCAACAACTTTTAGGGACGAGGAAAAGCTAAAGTTTGGGATGGAAGGCTTTATATATGATGCTGCCAATGAGACATTTGTAGCACCAAGTTTTGAGGCTCCTCAAGGAAAAACAAGTCAAAACAAGCGAAGTAGATCCGAGTATGAAGGGAGTTCTAACTCAATTGGTTCCACCAATCAAGCCAAAGTTCTTGAAACCATATCCACCAATTTTGAGAAAATCTATGTTCTAATGGAGAAAAGACAAAGAAATAGAGAGAATAGTATTTGGGATGCTATGAAGGATGTACCAAACTTGGATGACAATGTTCAATACAAGTTGGTTGAATTGCTTAATACTAAAGTAAAACAAGACATGTTCTTGAAGATGTCACCCGAAGAGCGCTCATCTTGGATATCCTTCAAATTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

290

Amino Acids

33.11

Weight (kDa)

6.79

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28820
prunus_persica	Prupe.1G177900_v2.0.a1 Prupe.2G137700_v2.0.a1 Prupe.3G105400_v2.0.a1 Prupe.5G010600_v2.0.a1 Prupe.6G148000_v2.0.a1 Prupe.7G010100_v2.0.a1 Prupe.7G052500_v2.0.a1 Prupe.7G084200_v2.0.a1 Prupe.8G061600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	744
AfeI	AGCGCT	1 cut(s)	839
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	6 cut(s)	328, 650, 767, 782, 820, 859
AluBI	AGCT	2 cut(s)	97, 484
AluI	AGCT	2 cut(s)	97, 484
Alw26I	GTCTC	2 cut(s)	177, 521
AlwI	GGATC	1 cut(s)	585
Aor51HI	AGCGCT	1 cut(s)	839
ApeKI	GCWGC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	2 cut(s)	66, 274
AsuHPI	GGTGA	1 cut(s)	819
AvaII	GGWCC	2 cut(s)	66, 274
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	4 cut(s)	101, 117, 204, 490
BceAI	ACGGC	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	177, 521
BfaI	CTAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	841
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	66, 274
BmgT120I	GGNCC	2 cut(s)	66, 274
BmiI	GGNNCC	4 cut(s)	275, 276, 555, 625
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	445, 505, 718
BmuI	ACTGGG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	5 cut(s)	128, 501, 733, 745, 760
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	1 cut(s)	505
BslFI	GGGAC	3 cut(s)	287, 316, 485
BsmAI	GTCTC	2 cut(s)	177, 521
BsmFI	GGGAC	3 cut(s)	287, 316, 485
Bsp143I	GATC	1 cut(s)	590
BspLI	GGNNCC	4 cut(s)	275, 276, 555, 625
BspPI	GGATC	1 cut(s)	585
BspQI	GCTCTTC	1 cut(s)	828
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	828
BstF5I	GGATG	5 cut(s)	128, 501, 733, 745, 760
BstH2I	RGCGCY	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	2 cut(s)	177, 521
BstMBI	GATC	1 cut(s)	590
BstNSI	RCATGY	2 cut(s)	91, 814
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BtsCI	GGATG	5 cut(s)	128, 501, 733, 745, 760
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	2 cut(s)	66, 274
Csp6I	GTAC	1 cut(s)	743
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	2 cut(s)	88, 811
CviJI	RGCY	7 cut(s)	97, 201, 299, 484, 504, 554, 638
CviKI_1	RGCY	7 cut(s)	97, 201, 299, 484, 504, 554, 638
CviQI	GTAC	1 cut(s)	743
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	852
Eco47I	GGWCC	2 cut(s)	66, 274
Eco47III	AGCGCT	1 cut(s)	839
Eco57I	CTGAAG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	852
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	91, 814
FaqI	GGGAC	3 cut(s)	287, 316, 485
FatI	CATG	2 cut(s)	87, 810
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	5 cut(s)	135, 508, 740, 752, 767
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	841
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	2 cut(s)	91, 814
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	819
Hpy166II	GTNNAC	2 cut(s)	294, 428
Hpy188I	TCNGA	3 cut(s)	49, 357, 595
Hpy188III	TCNNGA	3 cut(s)	196, 647, 817
Hpy8I	GTNNAC	2 cut(s)	294, 428
HpyAV	CCTTC	5 cut(s)	362, 494, 596, 730, 865
HpyCH4V	TGCA	4 cut(s)	87, 407, 434, 458
Hsp92II	CATG	2 cut(s)	91, 814
HspAI	GCGC	1 cut(s)	838
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	590
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	1 cut(s)	402
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	3 cut(s)	445, 505, 718
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	251, 341, 825
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	3 cut(s)	86, 832, 845
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	590
MnlI	CCTC	6 cut(s)	113, 159, 213, 469, 544, 567
MseI	TTAA	3 cut(s)	386, 444, 789
MunI	CAATTG	1 cut(s)	618
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	2 cut(s)	91, 814
NlaIV	GGNNCC	4 cut(s)	275, 276, 555, 625
NmuCI	GTSAC	2 cut(s)	341, 825
NspI	RCATGY	2 cut(s)	91, 814
PciI	ACATGT	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	274
PscI	ACATGT	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	274
PspN4I	GGNNCC	4 cut(s)	275, 276, 555, 625
PspPI	GGNCC	2 cut(s)	66, 274
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	386, 444, 789
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	2 cut(s)	66, 274
SetI	ASST	4 cut(s)	99, 354, 442, 486
SfaNI	GCATC	3 cut(s)	445, 505, 718
SinI	GGWCC	2 cut(s)	66, 274
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SspMI	CTAG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	386, 444, 789
Tru9I	TTAA	3 cut(s)	386, 444, 789
TseFI	GTSAC	2 cut(s)	341, 825
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	341, 825
TspDTI	ATGAA	5 cut(s)	17, 72, 321, 615, 749
VpaK11BI	GGWCC	2 cut(s)	66, 274
XceI	RCATGY	2 cut(s)	91, 814
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.