Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0018272

Physical Location & Seq

Genomic Coordinates Reverse (-)

15223933 .. 15224936

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G177900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGGGATTCACAACAAGGAAATAACAAAGGAAAGGGCAAAGAGAAAGAGAACTATGAATCTTGGACTATAGACGATACCAATGAGTTGTTGCACCTCTTGGTGGATGCTATCAATAGTGGATTGCATGATGCTAATGGGTCACTTAGCAAGCAAAATGTAGAAAGAGTGATACTTCCTCGTCTTAATGCAAAAATTAGGTTCCCAAAAACTTATAATCATTACTTGAGCCGAATGAAGTGGTTTAAGAAGCAATATAACAAGATGTCTACGCTTATGCGTAATAACTCTGGCTTTGGGTGGGACCCAATTGCAAAGACGTTCATTGCTAGTGATGAAGTATGGAAAGATTACTTGAAGTCCCACCCAAGTCACAGTAAACTTCGAGAAAAAAGTGTAGTTGATTATGAGGATTTGAAGATTATCGTTGGGGGTGGAACTACTACTGGGAATGACTCCATTGCATTGGGCACTGATGATACCGATGCAACAACTTATGGGGAAGAAAATAGAGATTTTGGGATAGAAGACTTTTCATATGATCCTAACAATGATGCGTTCATAGCACCAAATCACTATGAACCATCCTACCAACCTTCATCACCCCACCAATGTTCCCATCGCATTGAGACTATTTCTGCCAATTTTGTTAAAATATCTAACCTAATGGAGAAAAGAGAAAGAGAAAAAGAAAGAGAAAGAGAAAGAGAGAGGGATATTTGGGATGCTATAAAAGAGATACCAAATTTGGATGACAATACTCGTTACATGGCAGGTGAATTGCTTAGTAATAAAGCAAAGAAGGACTTGTTCTTGAAGATGTCATTGGAAGAGCGCTCATCTTGGATAAAATTCAAGTTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

289

Amino Acids

33.28

Weight (kDa)

6.11

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28820
prunus_persica	Prupe.1G177900_v2.0.a1 Prupe.2G137700_v2.0.a1 Prupe.3G105400_v2.0.a1 Prupe.5G010600_v2.0.a1 Prupe.6G148000_v2.0.a1 Prupe.7G010100_v2.0.a1 Prupe.7G052500_v2.0.a1 Prupe.7G084200_v2.0.a1 Prupe.8G061600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AarI	CACCTGC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	745, 851
AfeI	AGCGCT	1 cut(s)	836
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	358, 418, 817, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	1 cut(s)	536
Aor51HI	AGCGCT	1 cut(s)	836
ApoI	RAATTY	2 cut(s)	745, 851
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	594, 788
AvaII	GGWCC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	534
BccI	CCATC	2 cut(s)	592, 627
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	838
BfuAI	ACCTGC	1 cut(s)	764
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	203, 305, 306
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	5 cut(s)	97, 121, 475, 544, 715
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	2 cut(s)	324, 459
BseGI	GGATG	4 cut(s)	112, 584, 730, 757
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	2 cut(s)	324, 459
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	473
BslFI	GGGAC	2 cut(s)	317, 346
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	2 cut(s)	317, 346
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	203, 305, 306
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	825
BsrDI	GCAATG	2 cut(s)	324, 459
BsrI	ACTGG	1 cut(s)	451
BssMI	GATC	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	825
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	146, 785
BstF5I	GGATG	4 cut(s)	112, 584, 730, 757
BstH2I	RGCGCY	1 cut(s)	838
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	466
BtgZI	GCGATG	1 cut(s)	605
BtsCI	GGATG	4 cut(s)	112, 584, 730, 757
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	837
Cfr13I	GGNCC	1 cut(s)	304
CviAII	CATG	2 cut(s)	128, 769
CviJI	RGCY	2 cut(s)	231, 294
CviKI_1	RGCY	2 cut(s)	231, 294
DdeI	CTNAG	2 cut(s)	146, 785
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	304
Eco47III	AGCGCT	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	304
FaeI	CATG	2 cut(s)	131, 772
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	2 cut(s)	317, 346
FatI	CATG	2 cut(s)	127, 768
FauNDI	CATATG	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	269
FokI	GGATG	4 cut(s)	119, 571, 737, 764
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	836
HaeII	RGCGCY	1 cut(s)	838
HhaI	GCGC	1 cut(s)	837
Hin1II	CATG	2 cut(s)	131, 772
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HinfI	GANTC	3 cut(s)	8, 59, 455
HphI	GGTGA	2 cut(s)	594, 788
Hpy166II	GTNNAC	2 cut(s)	270, 380
Hpy188III	TCNNGA	2 cut(s)	386, 814
Hpy8I	GTNNAC	2 cut(s)	270, 380
HpyAV	CCTTC	2 cut(s)	606, 796
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	6 cut(s)	94, 127, 191, 314, 464, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	146, 785
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	2 cut(s)	131, 772
HspAI	GCGC	1 cut(s)	835
KflI	GGGWCCC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	541
LguI	GCTCTTC	1 cut(s)	825
LpnPI	CCDG	3 cut(s)	276, 432, 759
LweI	GCATC	5 cut(s)	97, 121, 475, 544, 715
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	141, 371, 764
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	5 cut(s)	430, 515, 539, 829, 842
MfeI	CAATTG	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	6 cut(s)	195, 309, 643, 745, 779, 851
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	4 cut(s)	107, 189, 403, 705
MseI	TTAA	3 cut(s)	186, 246, 651
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	2 cut(s)	131, 772
NlaIV	GGNNCC	3 cut(s)	203, 305, 306
NmuCI	GTSAC	2 cut(s)	141, 371
PaqCI	CACCTGC	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	8, 59
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	203, 305, 306
PspPI	GGNCC	1 cut(s)	304
PspPPI	RGGWCCY	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	186, 246, 651
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	6 cut(s)	99, 203, 323, 598, 666, 778
SfaNI	GCATC	5 cut(s)	97, 121, 475, 544, 715
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	6 cut(s)	195, 309, 643, 745, 779, 851
SspMI	CTAG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	385
TasI	AATT	6 cut(s)	195, 309, 643, 745, 779, 851
TfiI	GAWTC	2 cut(s)	8, 59
Tru1I	TTAA	3 cut(s)	186, 246, 651
Tru9I	TTAA	3 cut(s)	186, 246, 651
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	141, 371
Tsp45I	GTSAC	2 cut(s)	141, 371
TspDTI	ATGAA	8 cut(s)	72, 251, 313, 351, 525, 550, 588, 594
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	2 cut(s)	745, 851
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.