Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0018272

Physical Location & Seq

Genomic Coordinates Reverse (-)

8325387 .. 8326247

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G105400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGTGGTTTAAGAAGCAATATAACAAGATGTCGACACTTATGCGTAACAACTCTGGCTTTGGGTGGGACCCAATTGCAAAGACTTTCACTGCTAGTGAGGAAGTATGGAAAGATTACTTGAAGTCCCACCCAAGTCACAGTAAACTTCGAGAAAAAAATGTAGTTGATTATGAGGATTTGAAGATTGTTGTTGGGGGTGGAACTGCTACTGGGAATGGATCCATTGCATTAGGTGCTGATAATACCGATGCAACAACTTATGGGGAAGAAAATAGAGATTTTGGGATGGAAGACTTTTCATATGATCCTAACAATGATGCGTTCATAGCACCAAATCACTATGAACCATCCTACCAGCCTCCATCACCCTGCCAATGCAGTCCACCATCTCCTTCCCTTTTAGGTTCAGAGGTTCCCACTGAAAAATCAAGCCGCAATAAGCGAAATAGATCCGAGTATGAAGTGAGTTCTAGCTCAGTTGGGACCAACAATCAAGCCAAAGTTCTAGAAAATCTTTCTATTGGCATTGAGACTATTTCTGCCAATTTTGTTAAAATATCTAACCTAATGGAGAAAAGAGAAAGAAACAGAGACAGAGAGAAGGATATTTGGGATGCTTTAAAAGATATACCAAATTTGGATGACAATACTCGTTACATGGTATGTGAAACGCTTAGTAATAAAGCAAAGAAGGACTTGTTCTTGAAGATGTCATTGGAAGAGCGCTCATCTTGGATAAAATTCAAGTTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

253

Amino Acids

28.58

Weight (kDa)

6.03

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28820
prunus_persica	Prupe.1G177900_v2.0.a1 Prupe.2G137700_v2.0.a1 Prupe.3G105400_v2.0.a1 Prupe.5G010600_v2.0.a1 Prupe.6G148000_v2.0.a1 Prupe.7G010100_v2.0.a1 Prupe.7G052500_v2.0.a1 Prupe.7G084200_v2.0.a1 Prupe.8G061600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	4 cut(s)	216, 229, 302, 447
AcsI	RAATTY	2 cut(s)	637, 743
AfeI	AGCGCT	1 cut(s)	728
AgsI	TTSAA	4 cut(s)	124, 184, 709, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	1 cut(s)	477
AluI	AGCT	1 cut(s)	477
Alw26I	GTCTC	2 cut(s)	527, 588
AlwI	GGATC	4 cut(s)	216, 229, 302, 447
Aor51HI	AGCGCT	1 cut(s)	728
ApoI	RAATTY	2 cut(s)	637, 743
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	2 cut(s)	70, 486
AsuHPI	GGTGA	1 cut(s)	360
AvaII	GGWCC	2 cut(s)	70, 486
BamHI	GGATCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	300
BccI	CCATC	4 cut(s)	283, 358, 373, 397
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BcoDI	GTCTC	2 cut(s)	527, 588
BfaI	CTAG	3 cut(s)	96, 474, 509
BfoI	RGCGCY	1 cut(s)	730
BisI	GCNGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	437
Bme18I	GGWCC	2 cut(s)	70, 486
BmgT120I	GGNCC	2 cut(s)	70, 486
BmiI	GGNNCC	5 cut(s)	71, 72, 223, 417, 487
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	241, 310, 607
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	225
BseGI	GGATG	4 cut(s)	294, 350, 622, 649
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	217
BslFI	GGGAC	3 cut(s)	83, 112, 499
BsmAI	GTCTC	2 cut(s)	527, 588
BsmFI	GGGAC	3 cut(s)	83, 112, 499
Bsp143I	GATC	3 cut(s)	221, 307, 452
BspACI	CCGC	1 cut(s)	436
BspCNI	CTCAG	1 cut(s)	491
BspLI	GGNNCC	5 cut(s)	71, 72, 223, 417, 487
BspPI	GGATC	4 cut(s)	216, 229, 302, 447
BspQI	GCTCTTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	221, 307, 452
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	478, 677
BstF5I	GGATG	4 cut(s)	294, 350, 622, 649
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	3 cut(s)	224, 310, 455
BstMAI	GTCTC	2 cut(s)	527, 588
BstMBI	GATC	3 cut(s)	221, 307, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 329
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	221, 452
BstYI	RGATCY	2 cut(s)	221, 452
BtsCI	GGATG	4 cut(s)	294, 350, 622, 649
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 420
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	2 cut(s)	70, 486
CviAII	CATG	1 cut(s)	661
CviJI	RGCY	5 cut(s)	60, 361, 435, 477, 500
CviKI_1	RGCY	5 cut(s)	60, 361, 435, 477, 500
DdeI	CTNAG	2 cut(s)	478, 677
DpnI	GATC	3 cut(s)	223, 309, 454
DpnII	GATC	3 cut(s)	221, 307, 452
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco47I	GGWCC	2 cut(s)	70, 486
Eco47III	AGCGCT	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	70
FaeI	CATG	1 cut(s)	664
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	3 cut(s)	83, 112, 499
FatI	CATG	1 cut(s)	660
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	4 cut(s)	301, 337, 629, 656
Fsp4HI	GCNGC	1 cut(s)	436
FspBI	CTAG	3 cut(s)	96, 474, 509
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	1 cut(s)	436
HaeII	RGCGCY	1 cut(s)	730
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	1 cut(s)	664
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	3 cut(s)	36, 146, 386
Hpy188I	TCNGA	2 cut(s)	412, 457
Hpy188III	TCNNGA	3 cut(s)	152, 509, 706
Hpy8I	GTNNAC	3 cut(s)	36, 146, 386
HpyAV	CCTTC	3 cut(s)	405, 598, 688
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	80, 230, 254, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 329
HpyF3I	CTNAG	2 cut(s)	478, 677
Hsp92II	CATG	1 cut(s)	664
HspAI	GCGC	1 cut(s)	727
KflI	GGGWCCC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	221, 307, 452
LguI	GCTCTTC	1 cut(s)	717
LpnPI	CCDG	4 cut(s)	42, 198, 371, 385
LweI	GCATC	3 cut(s)	241, 310, 607
MaeI	CTAG	3 cut(s)	96, 474, 509
MaeIII	GTNAC	3 cut(s)	47, 137, 656
MalI	GATC	3 cut(s)	223, 309, 454
MboI	GATC	3 cut(s)	221, 307, 452
MboII	GAAGA	5 cut(s)	196, 281, 305, 721, 734
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	2 cut(s)	221, 452
MluCI	AATT	4 cut(s)	75, 547, 637, 743
MnlI	CCTC	4 cut(s)	94, 169, 372, 406
MseI	TTAA	3 cut(s)	12, 555, 623
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	236, 329
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	221, 307, 452
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	5 cut(s)	71, 72, 223, 417, 487
NmuCI	GTSAC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	717
PkrI	GCNGC	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	5 cut(s)	71, 72, 223, 417, 487
PspPI	GGNCC	2 cut(s)	70, 486
PspPPI	RGGWCCY	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	221, 452
SalI	GTCGAC	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	12, 555, 623
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	3 cut(s)	221, 307, 452
Sau96I	GGNCC	2 cut(s)	70, 486
SetI	ASST	5 cut(s)	238, 409, 417, 479, 570
SfaNI	GCATC	3 cut(s)	241, 310, 607
SinI	GGWCC	2 cut(s)	70, 486
Sse9I	AATT	4 cut(s)	75, 547, 637, 743
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	3 cut(s)	96, 474, 509
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	35, 151
TasI	AATT	4 cut(s)	75, 547, 637, 743
TauI	GCSGC	1 cut(s)	438
Tru1I	TTAA	3 cut(s)	12, 555, 623
Tru9I	TTAA	3 cut(s)	12, 555, 623
TscAI	CASTG	2 cut(s)	97, 427
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	5 cut(s)	17, 291, 316, 360, 477
TspRI	CASTG	2 cut(s)	97, 427
VpaK11BI	GGWCC	2 cut(s)	70, 486
XapI	RAATTY	2 cut(s)	637, 743
XbaI	TCTAGA	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	3 cut(s)	96, 474, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.