Prupe.5G010600_v2.0.a1
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0018272
Physical Location & Seq
Reverse (-)
1075238 .. 1076328
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G010600.1

Sequence Viewer

Length: 852 bp
ATGGACGATACCAATGAATTGTTACACCTCTTGGTGGATGCTATCAATATTGGATTGCGTGATGCTAATGGGTCACTTAGCAAGCAAAATGTAGAAAGAGTGATACTTCCTCGTCTTAATGCGAAAATTAAGTTTCCAGAAACTTATAATCATTGCTTGAGCTGTATGAAGTGGTTTAAGAAGCAATATAACAAGATGTCTACGCTTATGTGTAACATCTCTGGCTTTGAGTGGGACTTAATTGCAAAGACGTTTATTGCTAGTGATGAAGTATGGAAAGATTACTTGAAGTCCCACCCAAGTTACAGTATACTTTGGGAAAAAAGAGTAGTTGATTATGAGGACTTGAAGATCGTCGTTGAGGGTGGAATTGCTCCTGGGAATGGCTCCATTGCATTGGGTCCACCATCTCATTATTCCCCTTTAGGTTCAAAGGTTCTCACTGAAAAATCAAGCCGCAATAAGCGAAGTAGATCCGAGTATGAAGGCAGTATTAACTCAGTTGAGAGCAACAATCAAGCCAAATTTCTAGACAATCTTTCTATTGGCATTCATACTATTTCTCCCAATTTTGAAAGAATATCTAACCTAATGGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGATAGAGAGCAAAGAAGTAATATTTGGGATGCTATAAAAGAGATACCAAATTTTGATGAAAATACTCGTCACATGGCGGGTGATTTGCTTAATACTAAAGCAAAGAAGGATTTGTTCTTGAAGATGTCACCCGAAGAGCGCTCATCTTGGATACTCTTTAATTCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

284

Amino Acids

33.13

Weight (kDa)

7.71

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccI GTMKAC 2 cut(s) 200, 310
AciI CCGC 2 cut(s) 457, 758
AclWI GGATC 1 cut(s) 468
AcsI RAATTY 2 cut(s) 524, 730
AfeI AGCGCT 1 cut(s) 821
AfiI CCNNNNNNNGG 2 cut(s) 34, 383
AgsI TTSAA 5 cut(s) 289, 349, 432, 575, 802
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
AlwI GGATC 1 cut(s) 468
Aor51HI AGCGCT 1 cut(s) 821
ApoI RAATTY 2 cut(s) 524, 730
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 773, 801
AvaII GGWCC 1 cut(s) 401
BccI CCATC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 1 cut(s) 825
BfaI CTAG 2 cut(s) 261, 530
BfoI RGCGCY 1 cut(s) 823
BfuI GTATCC 1 cut(s) 825
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 388, 402
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 3 cut(s) 28, 52, 700
BpuEI CTTGAG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 383
Bse3DI GCAATG 2 cut(s) 151, 390
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 2 cut(s) 43, 715
BseLI CCNNNNNNNGG 2 cut(s) 34, 383
BseMI GCAATG 2 cut(s) 151, 390
BseMII CTCAG 1 cut(s) 513
BslFI GGGAC 2 cut(s) 248, 277
BslI CCNNNNNNNGG 2 cut(s) 34, 383
BsmFI GGGAC 2 cut(s) 248, 277
BsmI GAATGC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 351, 473
BspACI CCGC 2 cut(s) 457, 758
BspCNI CTCAG 1 cut(s) 512
BspLI GGNNCC 2 cut(s) 388, 402
BspPI GGATC 1 cut(s) 468
BspQI GCTCTTC 1 cut(s) 810
BsrDI GCAATG 2 cut(s) 151, 390
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 2 cut(s) 351, 473
BssNAI GTATAC 1 cut(s) 311
Bst1107I GTATAC 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 593, 810
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 77, 499
BstF5I GGATG 2 cut(s) 43, 715
BstH2I RGCGCY 1 cut(s) 823
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 2 cut(s) 354, 476
BstMBI GATC 2 cut(s) 351, 473
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 473
BstZ17I GTATAC 1 cut(s) 311
BsuI GTATCC 1 cut(s) 825
BtsCI GGATG 2 cut(s) 43, 715
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 401
CviAII CATG 1 cut(s) 754
CviJI RGCY 5 cut(s) 162, 225, 387, 456, 521
CviKI_1 RGCY 5 cut(s) 162, 225, 387, 456, 521
DdeI CTNAG 2 cut(s) 77, 499
DpnI GATC 2 cut(s) 353, 475
DpnII GATC 2 cut(s) 351, 473
Eam1104I CTCTTC 2 cut(s) 593, 810
EarI CTCTTC 2 cut(s) 593, 810
Eco47I GGWCC 1 cut(s) 401
Eco47III AGCGCT 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 757
FaqI GGGAC 2 cut(s) 248, 277
FatI CATG 1 cut(s) 753
FauI CCCGC 1 cut(s) 751
FblI GTMKAC 2 cut(s) 200, 310
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 2 cut(s) 50, 722
Fsp4HI GCNGC 1 cut(s) 457
FspBI CTAG 2 cut(s) 261, 530
GlaI GCGC 1 cut(s) 821
GluI GCNGC 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 823
HhaI GCGC 1 cut(s) 822
Hin1II CATG 1 cut(s) 757
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HphI GGTGA 2 cut(s) 773, 801
Hpy166II GTNNAC 3 cut(s) 201, 311, 404
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 4 cut(s) 137, 530, 799, 846
Hpy8I GTNNAC 3 cut(s) 201, 311, 404
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 479, 781
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 245, 395
HpyF3I CTNAG 2 cut(s) 77, 499
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 1 cut(s) 757
HspAI GCGC 1 cut(s) 820
Kzo9I GATC 2 cut(s) 351, 473
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 2 cut(s) 379, 392
LpnPI CCDG 5 cut(s) 150, 207, 363, 390, 831
LweI GCATC 3 cut(s) 28, 52, 700
MaeI CTAG 2 cut(s) 261, 530
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 6 cut(s) 21, 72, 212, 302, 749, 807
MalI GATC 2 cut(s) 353, 475
MboI GATC 2 cut(s) 351, 473
MboII GAAGA 4 cut(s) 361, 610, 814, 827
MflI RGATCY 1 cut(s) 473
MluCI AATT 8 cut(s) 17, 126, 240, 369, 524, 568, 730, 841
MnlI CCTC 4 cut(s) 38, 120, 334, 355
MseI TTAA 7 cut(s) 117, 129, 177, 239, 495, 771, 840
MspR9I CCNGG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 378
NdeII GATC 2 cut(s) 351, 473
NlaIII CATG 1 cut(s) 757
NlaIV GGNNCC 2 cut(s) 388, 402
NmuCI GTSAC 3 cut(s) 72, 749, 807
PciSI GCTCTTC 1 cut(s) 810
PctI GAATGC 1 cut(s) 549
PkrI GCNGC 1 cut(s) 458
PsiI TTATAA 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 2 cut(s) 388, 402
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 7 cut(s) 117, 129, 177, 239, 495, 771, 840
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 2 cut(s) 351, 473
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 378
SetI ASST 6 cut(s) 30, 164, 254, 430, 438, 591
SfaNI GCATC 3 cut(s) 28, 52, 700
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 8 cut(s) 17, 126, 240, 369, 524, 568, 730, 841
SsiI CCGC 2 cut(s) 457, 758
SspI AATATT 2 cut(s) 49, 703
SspMI CTAG 2 cut(s) 261, 530
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 254
TasI AATT 8 cut(s) 17, 126, 240, 369, 524, 568, 730, 841
TauI GCSGC 1 cut(s) 459
Tru1I TTAA 7 cut(s) 117, 129, 177, 239, 495, 771, 840
Tru9I TTAA 7 cut(s) 117, 129, 177, 239, 495, 771, 840
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 3 cut(s) 72, 749, 807
Tsp45I GTSAC 3 cut(s) 72, 749, 807
TspDTI ATGAA 6 cut(s) 30, 182, 282, 498, 542, 753
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 524, 730
XbaI TCTAGA 1 cut(s) 529
XmiI GTMKAC 2 cut(s) 200, 310
XspI CTAG 2 cut(s) 261, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.